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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8016#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 737 fasta sequence
[CGAGGCCAAGAATTTGGCACGAGGATTGTACTAATAATTTCTTATCGATGTCCATAATATCTTAATCACTTTTTTATATAATCTTATGGAAAATTAAGAACTCAAATAAAAATAACTATGATCTTGAAAGAAATTTAACGCTAATGTGTCATAAAACAAGGTGAAAGTTTTACCACAGGATTTATTTATTCTAGTATTGTCGAATATTAAAACCGCATCGTAATGTTTTCCAGCTGCTGGAGGATGAAGAAGAACAAGACTCAACATATGATCGTGGAAAGAAGCGAATGTTTTCTCGTGAAATACGTTCAATGTTGTATGCTTTTGGAGATGATGAAAATCCATTGCCTGAAACTGTTTCCTTAGTTGAAGATATAGCAGTTCGACATATTATAGAAATGACTAAAAAAGCATTAAAAATTGGTAAACCAGGAAAAATCTCTGTTGAAGATGTTACTTATCTAGTTCGACGTGATCCTAAGAAATTCTCTCGAGTTAAAGAGTTGCTCTTGCTCAGTGAGGAACTCCGACGTGCACGCAAAGCATTTGAAGAAGATGAGTTTGATGTGCTTAAATAAATAATTAGTTTATGACCTGTCTACATTTGTTTGTCGATTTCATTNTATGTATCGNCTATTTNTGTACAACCAAT-ACGTAATATCCTTCAATTTCTTTTATGTGAAGCTGCTGNCAACAAACCCAGTTCCACAACTTTTTTGTGAAGTCCATT-ATAAAAA]
[+] EMBL CD080275 [CGAGGCCAAGAATTTGGCACGAGGATTGTACTAATAATTTCTTATCGATGTCCATAATATCTTAATCACTTTTTTATATAATCTTATGGAAAATTAAGAACTCAAATAAAAATAACTATGATCTTGAAAGAAATTTAACGCTAATGTGTCATAAAACAAGGTGAAAGTTTTACCACAGGATTTATTTATTCTAGTATTGTCGAATATTAAAACCGCATCGTAATGTTTTCCAGCTGCTGGAGGATGAAGAAGAACAAGACTCAACATATGATCGTGGAAAGAAGCGAATGTTTTCTCGTGAAATACGTTCAATGTTGTATGCTTTTGGAGATGATGAAAATCCATTGCCTGAAACTGTTTCCTTAGTTGAAGATATAGCAGTTCGACATATTATAGAAATGACTAAAAAAGCATTAAAAATTGGTAAACCAGGAAAAATCTCTGTTGAAGATGTTACTTATCTAGTTCGACGTGATCCTAAGAAATTCTCTCGAGTTAAAGAGTTGCTCTTGCTCAGTGAGGAACTCCGACGTGCACGCAAAGCATTTGAAGAAGATGAGTTTGATGTGCTTAAATAAATAATTAGTTTATGACCTGTCTACATTTGTTTGTCGATTTCATTNTATGTATCGNCTATTTNTGTACAACCAAT ACGTAATATCCTTCAATTTCTTTTATGTGAAGCTGCTGNCAACAAACCCAGTTCCACAACTTTTTTGTGAAGTCCATT ATAAAAA]
[-] EMBL CD074193 [ AAGAACTCAAATAAAAATAACTATGATC TGAAAGAAATTTAACGCTAATGTGTCATAAAACAAGGTGAAAGTTTTACCACAGGATTTATTTATTCTAGTATTGTCGAATATTAAAACCGCATCGTAATGTTTTCCAGCTGCTGGAGGATGAAGAAGAACAAGACTCAACATATGATCGTGGAAAGAAGCGAATGTTTTCTCGTGAAATACGTTCAATGTTGTATGCTTTTGGAGATGATGAAAATCCATTGCCTGAAACTGTTTCCTTAGTTGAAGATATAGCAGTTCGACATATTATAGAAATGACTAAAAAAGCATTAAAAATTGGTAAACCAGGAAAAATCTCTGTTGAAGATGTTACTTATCTAGTTCGACGTGATCCTAAGAAATTCTCTCGAGTTAAAGAGTTGCTCTTGCTCAGTGAGGAACTCCGACGTGCACGCAAAGCATTTGAAGAAGATGAGTTTGATGTGCTTAAATAAATAATTAGTTTATGACCTGTCTACATTTGTTTGTCGATTTCATTTTATGTATCGTCTATTTTTGTACAACCAATAACGTAATATCCTTCAATTTCTTTTATGTGAAGCTGCTGCCAACAAACCCAGTTCCACAAC TTTTTGTGAAATCAATTAATAAAAA]
consensusID : consensus_8016#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 549 fasta sequence
[GATTTGTTGCATGGTTAAATGAGTGTTCTTGAGTTTACTTCAAGTCTGCTGGAGGATGAAGAAGAACAAGACTCAACATATGATCGTGGAAAGAAGCGAATGTTTTCTCGTGAAATACGTTCAATGTTGTATGCTTTTGGAGATGATGAAAATCCATTGCCTGAAACTGTTTCCTTAGTTGAAGATATAGCAGTTCGACATATTATAGAAATGACTAAAAAAGCATTAAAAATTGGTAAACCAGGAAAAATCTCTGTTGAAGATGTTACTTATCTAGTTCGACGTGATCCTAAGAAATTCTCTCGAGTTAAAGAGTTGCTCTTGCTCAGTGAGGAACTCCGACGTGCACGCAAAGCATTTGAAGAAGATGAGTTTGATGTGCTTAAATAAATAATTAGTTTATGACCTGTCTACATTTGTTTGTCGATTTCATTTTATGTATCGTCTATTTTTGTACAACCAATAACGTAATATCCTTCAATTTCTTTTATGTGAAGCTGCTGCCAACAAACCCAGTTCCACAACTTTTTGTGAAGTCAATAATAAAAA]
[-] EMBL CD074835 [GATTTGTTGCATGGTTAAATGAGTGTTCTTGAGTTTACTTCAAGTCTGCTGGAGGATGAAGAAGAACAAGACTCAACATATGATCGTGGAAAGAAGCGAATGTTTTCTCGTGAAATACGTTCAATGTTGTATGCTTTTGGAGATGATGAAAATCCATTGCCTGAAACTGTTTCCTTAGTTGAAGATATAGCAGTTCGACATATTATAGAAATGACTAAAAAAGCATTAAAAATTGGTAAACCAGGAAAAATCTCTGTTGAAGATGTTACTTATCTAGTTCGACGTGATCCTAAGAAATTCTCTCGAGTTAAAGAGTTGCTCTTGCTCAGTGAGGAACTCCGACGTGCACGCAAAGCATTTGAAGAAGATGAGTTTGATGTGCTTAAATAAATAATTAGTTTATGACCTGTCTACATTTGTTTGTCGATTTCATTTTATGTATCGTCTATTTTTGTACAACCAATAACGTAATATCCTTCAATTTCTTTTATGTGAAGCTGCTGCCAACAAACCCAGTTCCACAACTTTTTGTGAAGTCAATAATAAAAA]
[+] EMBL CD137953 [ TGACTAAAAAAGCATTAAAAATTGGTAAACCAGGAAAAATCTCTGTTGAAGATGTTACTTATCTAGTTCGACGTGATCCTAAGAAATTCTCTCGAGTTAAAGAGTTGCTCTTGCTCAGTGAGGAACTCCGACGTGCACGCAAAGCATTTGAAGAAGATGAGTTTGATGTGCTTAAATAAATAATTAGTTTATGACCTGTCTACATTTGTTTGTCGATTTCATTTTATGTATCGTCTATTTTTGTACAACCAATAACGTAATATCCTT ]
[+] EMBL CD137990 [ TGACTAAAAAAGCATTAAAAATTGGTAAACCAGGAAAAATCTCTGTTGAAGATGTTACTTATCTAGTTCGACGTGATCCTAAGAAATTCTCTCGAGTTAAAGAGTTGCTCTTGCTCAGTGAGGAACTCCGACGTGCACGCAAAGCATTTGAAGAAGATGAGTTTGATGTGCTTAAATAAATAATTAGTTTATGACCTGTCTACATTTGTTTGTCGATTTCATTTTATGTATCGTCTATTTTTGTACAACCAATAACGTAATATCCTT ]
consensusID : consensus_8016#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence
[CCCTCGAGCCAANAATTCGGCACGAGGTGATTTGTTGCATGGTTAAATGAGTGTTCTTGAGTTTAAGAACAAGACTCAACATATGATCGTGGAAAGAAGCGAATGTTTTCTCGTGAAATACGTTCAATGTTGTATGCTTTTGGAGATGATGAAAATCCATTGCCTGAAACTGTTTCCTTAGTTGAAGATATNNNNNNNNNNNNNNNNNNNNNNNTGACTAAAAAAGCATTAAAAATTGGTAAACCAGGAAAAATCTCTGTTGAAGATGTTACTTATCTAGTTCGACGTGATCCTAAGAAATTCTCTCGAGTTAAAGAGTTGCTCTTGCTCAGTGAGGAAAAGAAGATGAGTTTGATGTGCTTAAATAAATAATTAGTTTATGACCTGTCTACATTTGTTTGTCGATTTCATTNTATGTATCGTCTATTTTTGTACAACCAATAACGTAATATCCTTCAATTTCTTTTATGTGAAGCTGCTGCTNNNNNNNNNNNNNNNNCACTTTTTGTGAAGTCCATAATAAAA]
[+] EMBL CD081009 [CCCTCGAGCCAANAATTCGGCACGAGGTGATTTGTTGCATGGTTAAATGAGTGTTCTTGAGTTTAAGAACAAGACTCAACATATGATCGTGGAAAGAAGCGAATGTTTTCTCGTGAAATACGTTCAATGTTGTATGCTTTTGGAGATGATGAAAATCCATTGCCTGAAACTGTTTCCTTAGTTGAAGATATNNNNNNNNNNNNNNNNNNNNNNNTGACTAAAAAAGCATTAAAAATTGGTAAACCAGGAAAAATCTCTGTTGAAGATGTTACTTATCTAGTTCGACGTGATCCTAAGAAATTCTCTCGAGTTAAAGAGTTGCTCTTGCTCAGTGAGGAAAAGAAGATGAGTTTGATGTGCTTAAATAAATAATTAGTTTATGACCTGTCTACATTTGTTTGTCGATTTCATTNTATGTATCGTCTATTTTTGTACAACCAATAACGTAATATCCTTCAATTTCTTTTATGTGAAGCTGCTGCTNNNNNNNNNNNNNNNNCACTTTTTGTGAAGTCCATAATAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8016#0 CGAGGCCAAGAATTTGGCACGAGGATTGTACTAATAATTTCTTATCGATGTCCATAATAT 60
consensus_8016#1 ------------------------------------------------------------
consensus_8016#2 ------------------------------------------------------------
consensus_8016#0 CTTAATCACTTTTTTATATAATCTTATGGAAAATTAAGAACTCAAATAAAAATAACTATG 120
consensus_8016#1 ------------------------------------------------------------
consensus_8016#2 ------------------------------------------------------------
consensus_8016#0 ATCTTGAAAGAAATTTAACGCTAATGTGTCATAAAACAAGGTGAAAGTTTTACCACAGGA 180
consensus_8016#1 ------------------------------------------------------------
consensus_8016#2 ---------------------------------CCCTCGAGCCAANAATTCGGCACGAGG 27
consensus_8016#0 TTTATTTATTCTAGTATTGTCGAATATTAAAACCGCATCGTAATGTTTTCCAG-CTGCTG 239
consensus_8016#1 --GATTTGTT---GCATGGTTAAATG----AGTGTTCTTGAGTTTACTTCAAGTCTGCTG 51
consensus_8016#2 T-GATTTGTT---GCATGGTTAAATG---------------AGTGTTCTTGAGTTT---- 64
**** ** * ** ** *** * * ** *
consensus_8016#0 GAGGATGAAGAAGAACAAGACTCAACATATGATCGTGGAAAGAAGCGAATGTTTTCTCGT 299
consensus_8016#1 GAGGATGAAGAAGAACAAGACTCAACATATGATCGTGGAAAGAAGCGAATGTTTTCTCGT 111
consensus_8016#2 ----------AAGAACAAGACTCAACATATGATCGTGGAAAGAAGCGAATGTTTTCTCGT 114
**************************************************
consensus_8016#0 GAAATACGTTCAATGTTGTATGCTTTTGGAGATGATGAAAATCCATTGCCTGAAACTGTT 359
consensus_8016#1 GAAATACGTTCAATGTTGTATGCTTTTGGAGATGATGAAAATCCATTGCCTGAAACTGTT 171
consensus_8016#2 GAAATACGTTCAATGTTGTATGCTTTTGGAGATGATGAAAATCCATTGCCTGAAACTGTT 174
************************************************************
consensus_8016#0 TCCTTAGTTGAAGATATAGCAGTTCGACATATTATAGAAATGACTAAAAAAGCATTAAAA 419
consensus_8016#1 TCCTTAGTTGAAGATATAGCAGTTCGACATATTATAGAAATGACTAAAAAAGCATTAAAA 231
consensus_8016#2 TCCTTAGTTGAAGATATNNNNNNNNNNNNNNNNNNNNNNNTGACTAAAAAAGCATTAAAA 234
***************** ********************
consensus_8016#0 ATTGGTAAACCAGGAAAAATCTCTGTTGAAGATGTTACTTATCTAGTTCGACGTGATCCT 479
consensus_8016#1 ATTGGTAAACCAGGAAAAATCTCTGTTGAAGATGTTACTTATCTAGTTCGACGTGATCCT 291
consensus_8016#2 ATTGGTAAACCAGGAAAAATCTCTGTTGAAGATGTTACTTATCTAGTTCGACGTGATCCT 294
************************************************************
consensus_8016#0 AAGAAATTCTCTCGAGTTAAAGAGTTGCTCTTGCTCAGTGAGGAACTCCGACGTGCACGC 539
consensus_8016#1 AAGAAATTCTCTCGAGTTAAAGAGTTGCTCTTGCTCAGTGAGGAACTCCGACGTGCACGC 351
consensus_8016#2 AAGAAATTCTCTCGAGTTAAAGAGTTGCTCTTGCTCAGTGAGGAA--------------- 339
*********************************************
consensus_8016#0 AAAGCATTTGAAGAAGATGAGTTTGATGTGCTTAAATAAATAATTAGTTTATGACCTGTC 599
consensus_8016#1 AAAGCATTTGAAGAAGATGAGTTTGATGTGCTTAAATAAATAATTAGTTTATGACCTGTC 411
consensus_8016#2 ----------AAGAAGATGAGTTTGATGTGCTTAAATAAATAATTAGTTTATGACCTGTC 389
**************************************************
consensus_8016#0 TACATTTGTTTGTCGATTTCATTNTATGTATCGNCTATTTNTGTACAACCAATA-CGTAA 658
consensus_8016#1 TACATTTGTTTGTCGATTTCATTTTATGTATCGTCTATTTTTGTACAACCAATAACGTAA 471
consensus_8016#2 TACATTTGTTTGTCGATTTCATTNTATGTATCGTCTATTTTTGTACAACCAATAACGTAA 449
*********************** ********* ****** ************* *****
consensus_8016#0 TATCCTTCAATTTCTTTTATGTGAAGCTGCTGNCAACAAACCCAGTTCCACAACTTTTTT 718
consensus_8016#1 TATCCTTCAATTTCTTTTATGTGAAGCTGCTGCCAACAAACCCAGTTCCACAACTTTTT- 530
consensus_8016#2 TATCCTTCAATTTCTTTTATGTGAAGCTGCTGCTNNNNNNNNNNNNNNNNCA-CTTTTT- 507
******************************** ** ******
consensus_8016#0 GTGAAGTCCATTATAAAAA 737
consensus_8016#1 GTGAAGTCAATAATAAAAA 549
consensus_8016#2 GTGAAGTCCATAATAAAA- 525
******** ** ******
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||