These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8017#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1105 fasta sequence [CGAATTATTGACAGACTATATCTTATTGAAGAGCTTTCAGAAATTGAACGTTGCAACTTGATGTTATCACCGGAGCAACAACAGTTGGTCCCTTCTGATGTTAACTTCACATTATTCGGTGGAAGAATTCTGATTTTCAAACATTACAGTCTGTTCCTCGTGCTCAGGTTATGATAGCTTTAAATGTAATTCGTTCTGAAGACTCAATATTCCAGTGTCACTTTGGAAGAGATGAAAACTGTTTTGTCACTGTATGGGTCTGTATCCCACCTCAGTATCCACATAAAGCGCCATTACTAATTATGGATGGCCTAATCAATTTTGTCAGTCCCAATGGTACACATAATACGGAGGATGTTGTCACTGACCTATCTGATCTTCATGTACAGGAATTAGAAACTGAAGTCAATTGTTATTGGCAAGAATTTTTCACTTCATCTATGAATCAAAATGATAGTCATACTGTTGTAAACCATGTTGGTAATACTAATGATATTACTTCTAATAATATGGTGAATTCCGATAAATCGTTTTATAGTGGTAGTCCATGCGTCGGATTAAGTAAATGGAGTCG-AATATATTATCTTGTCAGTTAGCTAGATGTGCTGCTTGCATCGATGCATTATATCGTGATCAAATGATATGGAAAAATTCGTTGAAATCAACAAACAGTTCATCTGTTCGTTCTGTTAGGTATCCAACACGAAGTCGTCCTCTTCGTTACTTACCTTCACCCGGTGCATTTGTTCATCGTTAATAATATTGATAGATTGTTTTTCATTCATCTCTTATTGTTTGTATAAGTGTACTTAAACACTAAGGATATTTTTGTAAATCTTTATTCTGTTAAAAAGAAAGTAATTTTTCCTCATTGTCTAGTTTTTGTTTGTTTGTATAAACTACAACTTTTGTACTGATAGACTCTAAATTAGGGAACATTTATTTCATTTTGTAGTTAATATGAACTAAATATACATTTATTTGTACATAACATTTTGATAGAAAATTGATTGACGTGTCATTTGTTTTTAACAACACTAGAAATAAATGAAAAGTTGAAAATTTTTTTTTATTCCTACTAGGTGGTTTTTAAATCAATAAATAC] [+] EMBL CD081948 [CGAATTATTGACAGACTATATCTTATTGAAGAGCTTTCAGAAATTGAACGTTGCAACTTGATGTTATCACCGGAGCAACAACAGTTGGTCCCTTCTGATGTTAACTTCACATTATTCGGTGGAAGAATTCTGATTTTCAAACATTACAGTCTGTTCCTCGTGCTCAGGTTATGATAGCTTTAAATGTAATTCGTTCTGAAGACTCAATATTCCAGTGTCACTTTGGAAGAGATGAAAACTGTTTTGTCACTGTATGGGTCTGTATCCCACCTCAGTATCCACATAAAGCGCCATTACTAATTATGGATGGCCTAATCAATTTTGTCAGTCCCAATGGTACACATAATACGGAGGATGTTGTCACTGACCTATCTGATCTTCATGTACAGGAATTAGAAACTGAAGTCAATTGTTATTGGCAAGAATTTTTCACTTCATCTATGAATCAAAATGATAGTCATACTGTTGTAAACCATGTTGGTAATACTAATGATATTACTTCTAATAATATGGTGAATTCCGATAAATCGTTTTATAGTGGTAGTCCATGCGTCGGATTAAGTAAATGGAGTCG AATATATTATCTTGTCAGTTAGCTAGATGTGCTGCTTGCATCGATGCATTATATCGTGATCAAATGATATGGAAAAATTC ] [+] EMBL CD077620 [ cagagCTGTTCCTCGTGCTCAGGTTATGATAGCTTTAAATGTAATTCGTTCTGAAGACTCAATATTCCAGTGTCACTTTGGAAGAGATGAAAACTGTTTTGTCACTGTATGGGTCTGTATCCCACCTCAGTATCCACATAAAGCGCCATTACTAATTATGGATGGCCTAATCAATTTTGTCAGTCCCAATGGTACACATAATACGGAGGATGTTGTCACTGACCTATCTGATCTTCATGTACAGGAATTAGAAACTGAAGTCAATTGTTATTGGCAAGAATTTTTCACTTCATCTATGAATCANAATGATAGTCATACTTGTGTAA ] [-] EMBL CD074871 [ AATACTAATGATATTACTTCTAATAATATGGTGAATTCCGATAAATCGTTTTATAGTGGTAGTCCATGCGTCGGATTAAGTAAATGGAGTCGAAATATATTATCTTGTCAGTTAGCTAGATGTGCTGCTTGCATCGATGCATTATATCGTGATCAAATGATATGGAAAAATTCGTTGAAATCAACAAACAGTTCATCTGTTCGTTCTGTTAGGTATCCAACACGAAGTCGTCCTCTTCGTTACTTACCTTCACCCGGTGCATTTGTTCATCGTTAATAATATTGATAGATTGTTTTTCATTCATCTCTTATTGTTTGTATAAGTGTACTTAAACACTAAGGATATTTTTGTAAATCTTTATTCTGTTAAAAAGAAAGTAATTTTTCCTCATTGTCTAGTTTTTGTTTGTTTGTATAAACTACAACTTTTGTACTGATAGACTTTAAATTAGGGAACATTTATTTCATTTTGTAGTTAATATGAACTAAATATACATTTATTTGTACATAACATTTTGATAGAAAATTGATTGACGTGTCATTTGTTTTTAACAACACTAGAAATAAATGAAAAGTTGAAAATTTTTTTTTATTCCTACTAGGTGGTTTTTAAATCAATAAATA ] [-] EMBL CD139909 [ CGTCCTCTTCGTTACTTACCTTCACCCGGTGCATTTGTTCATCGTTAATAATATTGATAGA TGTTTTTCATCNATCTCTTATTGTTTGTATAAGTGTACTTAAACACTAAGGATATTTTTGTAAATCTTTATTCTGTTAAAAAGAAAGTAATTTTTCCTCATTGTCTAGTTTTTGTTTGTTTGTATAAACTACAACTTTTGTACTGATAGACTCTAAATTAGGGAACATTTATTTCATTTTGTAGTTAATATGAACTAAATATACATTTATTTGTACATAACATTTTGATAGAAAATTGATTGACGTGTCATTTGTTTTTAACGACACT ] [-] EMBL CD072868 [ AACTTTTGTACTGATAGACTCTAAATTAGGGAACATTTATTTCATTTTGTAGTTAATATGAACTAAATATACATTTATTTGTACATAACATTTTGATAGAAAATTGATTGACGTGTCATTTGTTTTTAACCCCCCTAGAAATAAATGAAAAGTTGAAAA TTTTTTTTATTCCAGCTAGGTGGTTTTTAAAACGATAAcaac] consensusID : consensus_8017#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [CCTCCGGGCCAAAAATTCGGCACGAGGGTCACTGACCTATCTGATCTTCATGTACAGGAATTAAAGAATTTTTCACTTCATCTATGAATCAAAATGATAGTCATACTGTTGTAAACCATGTTGGTAATACTAATGATATTACTTCTAATAATATGGTGAATTCCGATAAATCGTTTTATAGTGGTAGTNNNNNNNNNNNNNNNNNNNNNNNNGAGTCGAAATATATTATGTGCTAATTAACTAGATGTGCTGCTTGCATCGATGCATTATTCTGTGATAAAGGGATGTGGAAATTTTCGTTGAAATCAACAAACAGTTCATCTGTTCGTTCTGTCTTCGTTACTTACCTTCACCCGGTGCATTTGTTCATCGTTAATAATATTGATAGATTGTTTTTCATTCATCTCTTATTGTTTGTATAAGTGTACTTAAACACTAAGGATATTTTTGTAAATCTTTATTCTGTTAAAAAGAANNNNNNNNNNNNNNNNGACTAGTTTTTGTTTGTTGTATAAACTACAACTTTTGTACTGATANGACTCTAATTANGGAAACATTATTTCATTTTGNNAGTTATATGAACTAATTTTACATTTATTTGGACATAAACATTTTGATAGAAAATTGATTGACGTGGCCATTAAAATTTTTTTTTATCCCAATAAGGGGGTTTAAACACATAAAAA] [+] EMBL CD081043 [CCTCCGGGCCAAAAATTCGGCACGAGGGTCACTGACCTATCTGATCTTCATGTACAGGAATTAAAGAATTTTTCACTTCATCTATGAATCAAAATGATAGTCATACTGTTGTAAACCATGTTGGTAATACTAATGATATTACTTCTAATAATATGGTGAATTCCGATAAATCGTTTTATAGTGGTAGTNNNNNNNNNNNNNNNNNNNNNNNNGAGTCGAAATATATTATGTGCTAATTAACTAGATGTGCTGCTTGCATCGATGCATTATTCTGTGATAAAGGGATGTGGAAATTTTCGTTGAAATCAACAAACAGTTCATCTGTTCGTTCTGTCTTCGTTACTTACCTTCACCCGGTGCATTTGTTCATCGTTAATAATATTGATAGATTGTTTTTCATTCATCTCTTATTGTTTGTATAAGTGTACTTAAACACTAAGGATATTTTTGTAAATCTTTATTCTGTTAAAAAGAANNNNNNNNNNNNNNNNGACTAGTTTTTGTTTGTTGTATAAACTACAACTTTTGTACTGATANGACTCTAATTANGGAAACATTATTTCATTTTGNNAGTTATATGAACTAATTTTACATTTATTTGGACATAAACATTTTGATAGAAAATTGATTGACGTGGCCATTAAAATTTTTTTTTATCCCAATAAGGGGGTTTAAACACATAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8017#0 CGAATTATTGACAGACTATATCTTATTGAAGAGCTTTCAGAAATTGAACGTTGCAACTTG 60 consensus_8017#1 ------------------------------------------------------------ consensus_8017#0 ATGTTATCACCGGAGCAACAACAGTTGGTCCCTTCTGATGTTAACTTCACATTATTCGGT 120 consensus_8017#1 ------------------------------------------------------------ consensus_8017#0 GGAAGAATTCTGATTTTCAAACATTACAGTCTGTTCCTCGTGCTCAGGTTATGATAGCTT 180 consensus_8017#1 ------------------------------------------------------------ consensus_8017#0 TAAATGTAATTCGTTCTGAAGACTCAATATTCCAGTGTCACTTTGGAAGAGATGAAAACT 240 consensus_8017#1 ------------------------------------------------------------ consensus_8017#0 GTTTTGTCACTGTATGGGTCTGTATCCCACCTCAGTATCCACATAAAGCGCCATTACTAA 300 consensus_8017#1 ------------------------------------------------------------ consensus_8017#0 TTATGGATGGCCTAATCAATTTTGTCAGTCCCAATGGTACACATAATACGGAGGATGTTG 360 consensus_8017#1 ------------------------------CCTCCGGGCCAAAAATTCGGCACGAGG--G 28 ** ** ** * * * * * ** * * consensus_8017#0 TCACTGACCTATCTGATCTTCATGTACAGGAATTAGAAACTGAAGTCAATTGTTATTGGC 420 consensus_8017#1 TCACTGACCTATCTGATCTTCATGTACAGGAATTA------------------------- 63 *********************************** consensus_8017#0 AAGAATTTTTCACTTCATCTATGAATCAAAATGATAGTCATACTGTTGTAAACCATGTTG 480 consensus_8017#1 AAGAATTTTTCACTTCATCTATGAATCAAAATGATAGTCATACTGTTGTAAACCATGTTG 123 ************************************************************ consensus_8017#0 GTAATACTAATGATATTACTTCTAATAATATGGTGAATTCCGATAAATCGTTTTATAGTG 540 consensus_8017#1 GTAATACTAATGATATTACTTCTAATAATATGGTGAATTCCGATAAATCGTTTTATAGTG 183 ************************************************************ consensus_8017#0 GTAGTCCATGCGTCGGATTAAGTAAATGG-AGTCGAA-TATATTATCTTGTCAGTTAGCT 598 consensus_8017#1 GTAGTNNNNNNNNNNNNNNNNNNNNNNNNGAGTCGAAATATATTATGT-GCTAATTAACT 242 ***** ******* ******** * * * *** ** consensus_8017#0 AGATGTGCTGCTTGCATCGATGCATTATATCGTGATCAAATGATATGGAAAAATTCGTTG 658 consensus_8017#1 AGATGTGCTGCTTGCATCGATGCATTATTCTGTGATAAAGGGATGTGGAAATTTTCGTTG 302 **************************** ***** ** *** ****** ******* consensus_8017#0 AAATCAACAAACAGTTCATCTGTTCGTTCTGTTAGGTATCCAACACGAAGTCGTCCTCTT 718 consensus_8017#1 AAATCAACAAACAGTTCATCTGTTCGTTCTGT-------------------------CTT 337 ******************************** *** consensus_8017#0 CGTTACTTACCTTCACCCGGTGCATTTGTTCATCGTTAATAATATTGATAGATTGTTTTT 778 consensus_8017#1 CGTTACTTACCTTCACCCGGTGCATTTGTTCATCGTTAATAATATTGATAGATTGTTTTT 397 ************************************************************ consensus_8017#0 CATTCATCTCTTATTGTTTGTATAAGTGTACTTAAACACTAAGGATATTTTTGTAAATCT 838 consensus_8017#1 CATTCATCTCTTATTGTTTGTATAAGTGTACTTAAACACTAAGGATATTTTTGTAAATCT 457 ************************************************************ consensus_8017#0 TTATTCTGTTAAAAAGAAAGTAATTTTTCCTCATTGTCTAGTTTTTGTTTGTTTGTATAA 898 consensus_8017#1 TTATTCTGTTAAAAAGAANNNNNNNNNNNNNNNN-GACTAGTTTTTGTTTGTT-GTATAA 515 ****************** * **************** ****** consensus_8017#0 ACTACAACTTTTGTACTGATAGACTCTAAATTAGGGAACATTTATTTCATTTTGTAGTTA 958 consensus_8017#1 ACTACAACTTTTGTACTGATANGACTCTAATTANGGAAACATTATTTCATTTTGNNAGTT 575 ********************* ***** **** ************* * consensus_8017#0 ATATGAACTAAATATACATTTATTTGTACATAA-CATTTTGATAGAAAATTGATTGACGT 1017 consensus_8017#1 ATATGAACTAATTTTACATTTATTTGGACATAAACATTTTGATAGAAAATTGATTGACGT 635 *********** * ************ ****** ************************** consensus_8017#0 GTCATTTGTTTTTAACAACACTAGAAATAAATGAAAAGTTGAAAATTTTTTTTTATTCCT 1077 consensus_8017#1 GGCCATT----------------------------------AAAATTTTTTTTTATCCCA 661 * * ** *************** ** consensus_8017#0 ACTAGGTGGTTTTTAAATCAATAAATAC 1105 consensus_8017#1 ATAAGGGGGTTT--AAACACATAAAAA- 686 * *** ***** *** ***** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||