cluster # 8017

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8017 cluster # 8017 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8017#0 length = 1105 sequences # 5

consensus_8017#1 length = 686 sequences # 1

consensusID : consensus_8017#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1105
fasta sequence

                              [CGAATTATTGACAGACTATATCTTATTGAAGAGCTTTCAGAAATTGAACGTTGCAACTTGATGTTATCACCGGAGCAACAACAGTTGGTCCCTTCTGATGTTAACTTCACATTATTCGGTGGAAGAATTCTGATTTTCAAACATTACAGTCTGTTCCTCGTGCTCAGGTTATGATAGCTTTAAATGTAATTCGTTCTGAAGACTCAATATTCCAGTGTCACTTTGGAAGAGATGAAAACTGTTTTGTCACTGTATGGGTCTGTATCCCACCTCAGTATCCACATAAAGCGCCATTACTAATTATGGATGGCCTAATCAATTTTGTCAGTCCCAATGGTACACATAATACGGAGGATGTTGTCACTGACCTATCTGATCTTCATGTACAGGAATTAGAAACTGAAGTCAATTGTTATTGGCAAGAATTTTTCACTTCATCTATGAATCAAAATGATAGTCATACTGTTGTAAACCATGTTGGTAATACTAATGATATTACTTCTAATAATATGGTGAATTCCGATAAATCGTTTTATAGTGGTAGTCCATGCGTCGGATTAAGTAAATGGAGTCG-AATATATTATCTTGTCAGTTAGCTAGATGTGCTGCTTGCATCGATGCATTATATCGTGATCAAATGATATGGAAAAATTCGTTGAAATCAACAAACAGTTCATCTGTTCGTTCTGTTAGGTATCCAACACGAAGTCGTCCTCTTCGTTACTTACCTTCACCCGGTGCATTTGTTCATCGTTAATAATATTGATAGATTGTTTTTCATTCATCTCTTATTGTTTGTATAAGTGTACTTAAACACTAAGGATATTTTTGTAAATCTTTATTCTGTTAAAAAGAAAGTAATTTTTCCTCATTGTCTAGTTTTTGTTTGTTTGTATAAACTACAACTTTTGTACTGATAGACTCTAAATTAGGGAACATTTATTTCATTTTGTAGTTAATATGAACTAAATATACATTTATTTGTACATAACATTTTGATAGAAAATTGATTGACGTGTCATTTGTTTTTAACAACACTAGAAATAAATGAAAAGTTGAAAATTTTTTTTTATTCCTACTAGGTGGTTTTTAAATCAATAAATAC]

[+] EMBL CD081948             [CGAATTATTGACAGACTATATCTTATTGAAGAGCTTTCAGAAATTGAACGTTGCAACTTGATGTTATCACCGGAGCAACAACAGTTGGTCCCTTCTGATGTTAACTTCACATTATTCGGTGGAAGAATTCTGATTTTCAAACATTACAGTCTGTTCCTCGTGCTCAGGTTATGATAGCTTTAAATGTAATTCGTTCTGAAGACTCAATATTCCAGTGTCACTTTGGAAGAGATGAAAACTGTTTTGTCACTGTATGGGTCTGTATCCCACCTCAGTATCCACATAAAGCGCCATTACTAATTATGGATGGCCTAATCAATTTTGTCAGTCCCAATGGTACACATAATACGGAGGATGTTGTCACTGACCTATCTGATCTTCATGTACAGGAATTAGAAACTGAAGTCAATTGTTATTGGCAAGAATTTTTCACTTCATCTATGAATCAAAATGATAGTCATACTGTTGTAAACCATGTTGGTAATACTAATGATATTACTTCTAATAATATGGTGAATTCCGATAAATCGTTTTATAGTGGTAGTCCATGCGTCGGATTAAGTAAATGGAGTCG AATATATTATCTTGTCAGTTAGCTAGATGTGCTGCTTGCATCGATGCATTATATCGTGATCAAATGATATGGAAAAATTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD077620             [                                                                                                                                                 cagagCTGTTCCTCGTGCTCAGGTTATGATAGCTTTAAATGTAATTCGTTCTGAAGACTCAATATTCCAGTGTCACTTTGGAAGAGATGAAAACTGTTTTGTCACTGTATGGGTCTGTATCCCACCTCAGTATCCACATAAAGCGCCATTACTAATTATGGATGGCCTAATCAATTTTGTCAGTCCCAATGGTACACATAATACGGAGGATGTTGTCACTGACCTATCTGATCTTCATGTACAGGAATTAGAAACTGAAGTCAATTGTTATTGGCAAGAATTTTTCACTTCATCTATGAATCANAATGATAGTCATACTTGTGTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD074871             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AATACTAATGATATTACTTCTAATAATATGGTGAATTCCGATAAATCGTTTTATAGTGGTAGTCCATGCGTCGGATTAAGTAAATGGAGTCGAAATATATTATCTTGTCAGTTAGCTAGATGTGCTGCTTGCATCGATGCATTATATCGTGATCAAATGATATGGAAAAATTCGTTGAAATCAACAAACAGTTCATCTGTTCGTTCTGTTAGGTATCCAACACGAAGTCGTCCTCTTCGTTACTTACCTTCACCCGGTGCATTTGTTCATCGTTAATAATATTGATAGATTGTTTTTCATTCATCTCTTATTGTTTGTATAAGTGTACTTAAACACTAAGGATATTTTTGTAAATCTTTATTCTGTTAAAAAGAAAGTAATTTTTCCTCATTGTCTAGTTTTTGTTTGTTTGTATAAACTACAACTTTTGTACTGATAGACTTTAAATTAGGGAACATTTATTTCATTTTGTAGTTAATATGAACTAAATATACATTTATTTGTACATAACATTTTGATAGAAAATTGATTGACGTGTCATTTGTTTTTAACAACACTAGAAATAAATGAAAAGTTGAAAATTTTTTTTTATTCCTACTAGGTGGTTTTTAAATCAATAAATA ]
[-] EMBL CD139909             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGTCCTCTTCGTTACTTACCTTCACCCGGTGCATTTGTTCATCGTTAATAATATTGATAGA TGTTTTTCATCNATCTCTTATTGTTTGTATAAGTGTACTTAAACACTAAGGATATTTTTGTAAATCTTTATTCTGTTAAAAAGAAAGTAATTTTTCCTCATTGTCTAGTTTTTGTTTGTTTGTATAAACTACAACTTTTGTACTGATAGACTCTAAATTAGGGAACATTTATTTCATTTTGTAGTTAATATGAACTAAATATACATTTATTTGTACATAACATTTTGATAGAAAATTGATTGACGTGTCATTTGTTTTTAACGACACT                                                                  ]
[-] EMBL CD072868             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AACTTTTGTACTGATAGACTCTAAATTAGGGAACATTTATTTCATTTTGTAGTTAATATGAACTAAATATACATTTATTTGTACATAACATTTTGATAGAAAATTGATTGACGTGTCATTTGTTTTTAACCCCCCTAGAAATAAATGAAAAGTTGAAAA TTTTTTTTATTCCAGCTAGGTGGTTTTTAAAACGATAAcaac]




>consensus_8017#0
CGAATTATTGACAGACTATATCTTATTGAAGAGCTTTCAGAAATTGAACGTTGCAACTTG
ATGTTATCACCGGAGCAACAACAGTTGGTCCCTTCTGATGTTAACTTCACATTATTCGGT
GGAAGAATTCTGATTTTCAAACATTACAGTCTGTTCCTCGTGCTCAGGTTATGATAGCTT
TAAATGTAATTCGTTCTGAAGACTCAATATTCCAGTGTCACTTTGGAAGAGATGAAAACT
GTTTTGTCACTGTATGGGTCTGTATCCCACCTCAGTATCCACATAAAGCGCCATTACTAA
TTATGGATGGCCTAATCAATTTTGTCAGTCCCAATGGTACACATAATACGGAGGATGTTG
TCACTGACCTATCTGATCTTCATGTACAGGAATTAGAAACTGAAGTCAATTGTTATTGGC
AAGAATTTTTCACTTCATCTATGAATCAAAATGATAGTCATACTGTTGTAAACCATGTTG
GTAATACTAATGATATTACTTCTAATAATATGGTGAATTCCGATAAATCGTTTTATAGTG
GTAGTCCATGCGTCGGATTAAGTAAATGGAGTCGAATATATTATCTTGTCAGTTAGCTAG
ATGTGCTGCTTGCATCGATGCATTATATCGTGATCAAATGATATGGAAAAATTCGTTGAA
ATCAACAAACAGTTCATCTGTTCGTTCTGTTAGGTATCCAACACGAAGTCGTCCTCTTCG
TTACTTACCTTCACCCGGTGCATTTGTTCATCGTTAATAATATTGATAGATTGTTTTTCA
TTCATCTCTTATTGTTTGTATAAGTGTACTTAAACACTAAGGATATTTTTGTAAATCTTT
ATTCTGTTAAAAAGAAAGTAATTTTTCCTCATTGTCTAGTTTTTGTTTGTTTGTATAAAC
TACAACTTTTGTACTGATAGACTCTAAATTAGGGAACATTTATTTCATTTTGTAGTTAAT
ATGAACTAAATATACATTTATTTGTACATAACATTTTGATAGAAAATTGATTGACGTGTC
ATTTGTTTTTAACAACACTAGAAATAAATGAAAAGTTGAAAATTTTTTTTTATTCCTACT
AGGTGGTTTTTAAATCAATAAATAC

consensusID : consensus_8017#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [CCTCCGGGCCAAAAATTCGGCACGAGGGTCACTGACCTATCTGATCTTCATGTACAGGAATTAAAGAATTTTTCACTTCATCTATGAATCAAAATGATAGTCATACTGTTGTAAACCATGTTGGTAATACTAATGATATTACTTCTAATAATATGGTGAATTCCGATAAATCGTTTTATAGTGGTAGTNNNNNNNNNNNNNNNNNNNNNNNNGAGTCGAAATATATTATGTGCTAATTAACTAGATGTGCTGCTTGCATCGATGCATTATTCTGTGATAAAGGGATGTGGAAATTTTCGTTGAAATCAACAAACAGTTCATCTGTTCGTTCTGTCTTCGTTACTTACCTTCACCCGGTGCATTTGTTCATCGTTAATAATATTGATAGATTGTTTTTCATTCATCTCTTATTGTTTGTATAAGTGTACTTAAACACTAAGGATATTTTTGTAAATCTTTATTCTGTTAAAAAGAANNNNNNNNNNNNNNNNGACTAGTTTTTGTTTGTTGTATAAACTACAACTTTTGTACTGATANGACTCTAATTANGGAAACATTATTTCATTTTGNNAGTTATATGAACTAATTTTACATTTATTTGGACATAAACATTTTGATAGAAAATTGATTGACGTGGCCATTAAAATTTTTTTTTATCCCAATAAGGGGGTTTAAACACATAAAAA]

[+] EMBL CD081043             [CCTCCGGGCCAAAAATTCGGCACGAGGGTCACTGACCTATCTGATCTTCATGTACAGGAATTAAAGAATTTTTCACTTCATCTATGAATCAAAATGATAGTCATACTGTTGTAAACCATGTTGGTAATACTAATGATATTACTTCTAATAATATGGTGAATTCCGATAAATCGTTTTATAGTGGTAGTNNNNNNNNNNNNNNNNNNNNNNNNGAGTCGAAATATATTATGTGCTAATTAACTAGATGTGCTGCTTGCATCGATGCATTATTCTGTGATAAAGGGATGTGGAAATTTTCGTTGAAATCAACAAACAGTTCATCTGTTCGTTCTGTCTTCGTTACTTACCTTCACCCGGTGCATTTGTTCATCGTTAATAATATTGATAGATTGTTTTTCATTCATCTCTTATTGTTTGTATAAGTGTACTTAAACACTAAGGATATTTTTGTAAATCTTTATTCTGTTAAAAAGAANNNNNNNNNNNNNNNNGACTAGTTTTTGTTTGTTGTATAAACTACAACTTTTGTACTGATANGACTCTAATTANGGAAACATTATTTCATTTTGNNAGTTATATGAACTAATTTTACATTTATTTGGACATAAACATTTTGATAGAAAATTGATTGACGTGGCCATTAAAATTTTTTTTTATCCCAATAAGGGGGTTTAAACACATAAAAA]




>consensus_8017#1
CCTCCGGGCCAAAAATTCGGCACGAGGGTCACTGACCTATCTGATCTTCATGTACAGGAA
TTAAAGAATTTTTCACTTCATCTATGAATCAAAATGATAGTCATACTGTTGTAAACCATG
TTGGTAATACTAATGATATTACTTCTAATAATATGGTGAATTCCGATAAATCGTTTTATA
GTGGTAGTNNNNNNNNNNNNNNNNNNNNNNNNGAGTCGAAATATATTATGTGCTAATTAA
CTAGATGTGCTGCTTGCATCGATGCATTATTCTGTGATAAAGGGATGTGGAAATTTTCGT
TGAAATCAACAAACAGTTCATCTGTTCGTTCTGTCTTCGTTACTTACCTTCACCCGGTGC
ATTTGTTCATCGTTAATAATATTGATAGATTGTTTTTCATTCATCTCTTATTGTTTGTAT
AAGTGTACTTAAACACTAAGGATATTTTTGTAAATCTTTATTCTGTTAAAAAGAANNNNN
NNNNNNNNNNNGACTAGTTTTTGTTTGTTGTATAAACTACAACTTTTGTACTGATANGAC
TCTAATTANGGAAACATTATTTCATTTTGNNAGTTATATGAACTAATTTTACATTTATTT
GGACATAAACATTTTGATAGAAAATTGATTGACGTGGCCATTAAAATTTTTTTTTATCCC
AATAAGGGGGTTTAAACACATAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8017#0      CGAATTATTGACAGACTATATCTTATTGAAGAGCTTTCAGAAATTGAACGTTGCAACTTG 60
consensus_8017#1      ------------------------------------------------------------
                                                                                  

consensus_8017#0      ATGTTATCACCGGAGCAACAACAGTTGGTCCCTTCTGATGTTAACTTCACATTATTCGGT 120
consensus_8017#1      ------------------------------------------------------------
                                                                                  

consensus_8017#0      GGAAGAATTCTGATTTTCAAACATTACAGTCTGTTCCTCGTGCTCAGGTTATGATAGCTT 180
consensus_8017#1      ------------------------------------------------------------
                                                                                  

consensus_8017#0      TAAATGTAATTCGTTCTGAAGACTCAATATTCCAGTGTCACTTTGGAAGAGATGAAAACT 240
consensus_8017#1      ------------------------------------------------------------
                                                                                  

consensus_8017#0      GTTTTGTCACTGTATGGGTCTGTATCCCACCTCAGTATCCACATAAAGCGCCATTACTAA 300
consensus_8017#1      ------------------------------------------------------------
                                                                                  

consensus_8017#0      TTATGGATGGCCTAATCAATTTTGTCAGTCCCAATGGTACACATAATACGGAGGATGTTG 360
consensus_8017#1      ------------------------------CCTCCGGGCCAAAAATTCGGCACGAGG--G 28
                                                    **   **  ** * * *  * * ** *  *

consensus_8017#0      TCACTGACCTATCTGATCTTCATGTACAGGAATTAGAAACTGAAGTCAATTGTTATTGGC 420
consensus_8017#1      TCACTGACCTATCTGATCTTCATGTACAGGAATTA------------------------- 63
                      ***********************************                         

consensus_8017#0      AAGAATTTTTCACTTCATCTATGAATCAAAATGATAGTCATACTGTTGTAAACCATGTTG 480
consensus_8017#1      AAGAATTTTTCACTTCATCTATGAATCAAAATGATAGTCATACTGTTGTAAACCATGTTG 123
                      ************************************************************

consensus_8017#0      GTAATACTAATGATATTACTTCTAATAATATGGTGAATTCCGATAAATCGTTTTATAGTG 540
consensus_8017#1      GTAATACTAATGATATTACTTCTAATAATATGGTGAATTCCGATAAATCGTTTTATAGTG 183
                      ************************************************************

consensus_8017#0      GTAGTCCATGCGTCGGATTAAGTAAATGG-AGTCGAA-TATATTATCTTGTCAGTTAGCT 598
consensus_8017#1      GTAGTNNNNNNNNNNNNNNNNNNNNNNNNGAGTCGAAATATATTATGT-GCTAATTAACT 242
                      *****                         ******* ******** * *  * *** **

consensus_8017#0      AGATGTGCTGCTTGCATCGATGCATTATATCGTGATCAAATGATATGGAAAAATTCGTTG 658
consensus_8017#1      AGATGTGCTGCTTGCATCGATGCATTATTCTGTGATAAAGGGATGTGGAAATTTTCGTTG 302
                      ****************************   ***** **  *** ******  *******

consensus_8017#0      AAATCAACAAACAGTTCATCTGTTCGTTCTGTTAGGTATCCAACACGAAGTCGTCCTCTT 718
consensus_8017#1      AAATCAACAAACAGTTCATCTGTTCGTTCTGT-------------------------CTT 337
                      ********************************                         ***

consensus_8017#0      CGTTACTTACCTTCACCCGGTGCATTTGTTCATCGTTAATAATATTGATAGATTGTTTTT 778
consensus_8017#1      CGTTACTTACCTTCACCCGGTGCATTTGTTCATCGTTAATAATATTGATAGATTGTTTTT 397
                      ************************************************************

consensus_8017#0      CATTCATCTCTTATTGTTTGTATAAGTGTACTTAAACACTAAGGATATTTTTGTAAATCT 838
consensus_8017#1      CATTCATCTCTTATTGTTTGTATAAGTGTACTTAAACACTAAGGATATTTTTGTAAATCT 457
                      ************************************************************

consensus_8017#0      TTATTCTGTTAAAAAGAAAGTAATTTTTCCTCATTGTCTAGTTTTTGTTTGTTTGTATAA 898
consensus_8017#1      TTATTCTGTTAAAAAGAANNNNNNNNNNNNNNNN-GACTAGTTTTTGTTTGTT-GTATAA 515
                      ******************                 * **************** ******

consensus_8017#0      ACTACAACTTTTGTACTGATAGACTCTAAATTAGGGAACATTTATTTCATTTTGTAGTTA 958
consensus_8017#1      ACTACAACTTTTGTACTGATANGACTCTAATTANGGAAACATTATTTCATTTTGNNAGTT 575
                      *********************       ***** ****   *************    * 

consensus_8017#0      ATATGAACTAAATATACATTTATTTGTACATAA-CATTTTGATAGAAAATTGATTGACGT 1017
consensus_8017#1      ATATGAACTAATTTTACATTTATTTGGACATAAACATTTTGATAGAAAATTGATTGACGT 635
                      *********** * ************ ****** **************************

consensus_8017#0      GTCATTTGTTTTTAACAACACTAGAAATAAATGAAAAGTTGAAAATTTTTTTTTATTCCT 1077
consensus_8017#1      GGCCATT----------------------------------AAAATTTTTTTTTATCCCA 661
                      * *  **                                  *************** ** 

consensus_8017#0      ACTAGGTGGTTTTTAAATCAATAAATAC 1105
consensus_8017#1      ATAAGGGGGTTT--AAACACATAAAAA- 686
                      *  *** *****  ***   ***** *