cluster # 8018

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Schistosoma mansoni
cluster # 8018 cluster # 8018 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8018#0 length = 686 sequences # 3

consensus_8018#1 length = 640 sequences # 3

consensusID : consensus_8018#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 686
fasta sequence

                              [TCTAATGTTACAATGTATGCATTTTCTATCAGGGTTAGTCCGGTATTATGATCATTCCCTTCAGACAGGACACGACGCTCGGACCACGAATATTATACGGGAGTAAATCCTCAGGCGAAACTTATCGGGGTCGTTACGAAATGTCTTGCAATGCAGAAGTTCCTAACTTCATTCGTAATAGTGGCATAAAGTCAAACCAGTTTTCACCAGACAATGCATTTTTACCTCCATCGATTATTCACAGTAGCTGTTCACCAAAAGGCTCTCTACTCACTACATCGTTCTTAGACTTTCTGGAAGATTGCTTGCATCTGTCTCTTCGTTCACTTAAGGCCATATTGAATAATCAGAGAGGGTGTAGAAGAGCTATGGAGCATGCACTTGTCATTAGTCTAGTAACTTTCTGTCTCCTACATCCTAATTATTCAACAAAAACGCTAGCACTAGACATGCTCACTGCATTGTGTCTAATTGAAGGTGGACACGTAAAAGTCTTGCAGTCCTTCGACAGGTTACGCGTTGTGATGGGTGAAGGATTGAGATTTGAGCTTCTTTTGGCAGCATTCAGATACCACGAATCGCTTGATGTAGAAAACTACAATCTAGATTTTGCAGTAACTTGCGTACAGTTTCTCAATATTATTGTTCATTCACCAGAGAATATAAATTTACGAGTATATTTACAA]

[+] EMBL CD162634             [TCTAATGTTACAATGTATGCATTTTCTATCAGGGTTAGTCCGGTATTATGATCATTCCCTTCAGACAGGACACGACGCTCGGACCACGAATATTATACGGGAGTAAATCCTCAGGCGAAACTTATCGGGGTCGTTACGAAATGTCTTGCAATGCAGAAGTTCCTAACTTCATTCGTAATAGTGGCATAAAGTCAAACCAGTTTTCACCAGACAATGCATTTTTACCTCCATCGATTATTCACAGTAGCTGTTCACCAAAAGGCTCTCTACTCACTACATCGTTCTTAGACTTTCTGGAAGATT                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD151905             [                                                                                     ACGAATATTATACGGGAGTAAATCCTCAGGCGAAACTTATCGGGGTCGTTACGAAATGTCTTGCAATGCAGAAGTTCCTAACTTCATTCGTAATAGTGGCATAAAGTCAAACCAGTTTACACCAGACAATGCATTTTTACCTCCATCGATTATTCACAGTAGCTGTTCACCAAAAGGCTCTCTACTCACTACATCGTTCTTAGACTTTCCGGAAGATTGCTTGCA                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD128109             [                                                                                                                                                                                                                                                         GTTCACCAAAAGGCTCTCTACTCACTACATCGTTCTTAGACTTTCTGGAAGATTGCTTGCATCTGTCTCTTCGTTCACTTAAGGCCATATTGAATAATCAGAGAGGGTGTAGAAGAGCTATGGAGCATGCACTTGTCATTAGTCTAGTAACTTTCTGTCTCCTACATCCTAATTATTCAACAAAAACGCTAGCACTAGACATGCTCACTGCATTGTGTCTAATTGAAGGTGGACACGTAAAAGTCTTGCAGTCCTTCGACAGGTTACGCGTTGTGATGGGTGAAGGATTGAGATTTGAGCTTCTTTTGGCAGCATTCAGATACCACGAATCGCTTGATGTAGAAAACTACAATCTAGATTTTGCAGTAACTTGCGTACAGTTTCTCAATATTATTGTTCATTCACCAGAGAATATAAATTTACGAGTATATTTACAA]




>consensus_8018#0
TCTAATGTTACAATGTATGCATTTTCTATCAGGGTTAGTCCGGTATTATGATCATTCCCT
TCAGACAGGACACGACGCTCGGACCACGAATATTATACGGGAGTAAATCCTCAGGCGAAA
CTTATCGGGGTCGTTACGAAATGTCTTGCAATGCAGAAGTTCCTAACTTCATTCGTAATA
GTGGCATAAAGTCAAACCAGTTTTCACCAGACAATGCATTTTTACCTCCATCGATTATTC
ACAGTAGCTGTTCACCAAAAGGCTCTCTACTCACTACATCGTTCTTAGACTTTCTGGAAG
ATTGCTTGCATCTGTCTCTTCGTTCACTTAAGGCCATATTGAATAATCAGAGAGGGTGTA
GAAGAGCTATGGAGCATGCACTTGTCATTAGTCTAGTAACTTTCTGTCTCCTACATCCTA
ATTATTCAACAAAAACGCTAGCACTAGACATGCTCACTGCATTGTGTCTAATTGAAGGTG
GACACGTAAAAGTCTTGCAGTCCTTCGACAGGTTACGCGTTGTGATGGGTGAAGGATTGA
GATTTGAGCTTCTTTTGGCAGCATTCAGATACCACGAATCGCTTGATGTAGAAAACTACA
ATCTAGATTTTGCAGTAACTTGCGTACAGTTTCTCAATATTATTGTTCATTCACCAGAGA
ATATAAATTTACGAGTATATTTACAA

consensusID : consensus_8018#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 640
fasta sequence

                              [TTCGAATGTGCTGAAGGTCGTTGGCTTCTTCAAGAGGTCCCTCATTGGTTGAGAATAATGGTTATCAGCTAGCGTATTGTACTATGGGGAATGCCCATGCCTTAGAGAAACATCAGCTTTCAAATGTTGGGAGTGGAACATCGAGTTCTGTGGGTATAAAAGATTTTGAAAGTCGTTGGAGATCTTTTATGAATTCACTTGATTTATCAGCCGAACATATAAAACAAATTGAACTATTAGATGAAGGGAAGAAGGCAGAACTACTGTCAAACTATGAATC-AAAAAACCCTAGGTGCTCTGCTTTTCACTATGTTACGCTTTTAAAAGCTACTCGGATTGAATTAATTTGGAAAAAGAAAGTCGATGGTTCATCATTTCGGTCTCTACTGTCGTCAATAGAGATTTCTCTTCGCACCAACAATGTTGAGTGGGTTTATGACTTTTTAGACCTCTAGGGCCTTGAGACACTAGTCGATCTAATGGTACAATGTATGCATTTTCTATCAGGACAGGACACGACACTCGGACCACGAATATTATACGGGAGTAAATCCTCAGGCGAAACTTATCGGGGTCGTTACGAAATGTCTTGCAATGCAGAAGTTCCTAACTTCATTCGTAATAGTGGCATAAAGTCAAA]

[+] EMBL CD189622             [TTCGAATGTGCTGAAGGTCGTTGGCTTCTTCAAGAGGTCCCTCATTGGTTGAGAATAATGGTTATCAGCTAGCGTATTGTACTATGGGGAATGCCCATGCCTTAGAGAAACATCAGCTTTCAAATGTTGGGAGTGGAACATCGAGTTCTGTGGGTATAAAAGATTTTGAAAGTCGTTGGAGATCTTTTATGAATTCACTTGATTTATCAGCCGAACATATAAAACAAATTGAACTATTAGATGAAGGGAAGAAGGCAGAACTACTGTCAAACTATGAATC AAAAAACCCTAGGTGCTCTGCTTTTCACTATGTTACGCTTTTAAAAGCTACTCGGATTGAATTAATTTGGAAAAAGAAAGTCGATGGTTCATCATTTCGGTC                                                                                                                                                                                                                                                                  ]
[-] EMBL CD188634             [                                                                                                                                                 TTCTGTGGGTATAAAAGATTTTGAAAGTCGTTGGAGATCTTTTATGAATTCACTTGATTTATCAGCCGAACATATAAAACAAATTGAACTATTAGATGAAGGGAAGAAGGCAGAGCTACTGTCAAACTATGAATC AAAAAACCCTAGGTGCTCTGCTTTTCACTATGTTACGCTTTTAAAAGCTACTCGGATTGAATTAATTTGGAAAAAGAAAGTCGATGGTTCATCATTTCGGTCTCTACTGTCGTCAATAGAGATTTCTCTTCGCACCAACAATGTTGAGTGGGTTTATGACTTTTTAGACCTCTAGGGCCTTGAGACACTAGTCGATCTAATGGTACAATGTATG                                                                                                                                                  ]
[+] EMBL CD189784             [                                                                                                                                                                                                                      ACATATAAAACAAATTGAACTATTAGATGAAGGGAAGAAGGCAGAACTACTGTCAAACTATGAATCAAAAAAACCCTAGGTGCTCTGCTTTTCACTATGTTACGCTTTTAAAAGCTACTCGGATTGAATTAATTTGGAAAAAGAAAGTCGATGGTTCATCATTTCGGTCTCTACTATCGTCAATAGAGATTTCTCTTCGCACCAACAATGTTGAGTGGGTTTATGACTTTCTAGACCTCGAGGGCCTTGAGACACTAGTCGATCTAATGTTACAATGTATGCATTTTCTATCAGGACAGGACACGACACTCGGACCACGAATATTATACGGGAGTAAATCCTCAGGCGAAACTTATCGGGGTCGTTACGAAATGTCTTGCAATGCAGAAGTTCCTAACTTCATTCGTAATAGTGGCATAAAGTCAAA]




>consensus_8018#1
TTCGAATGTGCTGAAGGTCGTTGGCTTCTTCAAGAGGTCCCTCATTGGTTGAGAATAATG
GTTATCAGCTAGCGTATTGTACTATGGGGAATGCCCATGCCTTAGAGAAACATCAGCTTT
CAAATGTTGGGAGTGGAACATCGAGTTCTGTGGGTATAAAAGATTTTGAAAGTCGTTGGA
GATCTTTTATGAATTCACTTGATTTATCAGCCGAACATATAAAACAAATTGAACTATTAG
ATGAAGGGAAGAAGGCAGAACTACTGTCAAACTATGAATCAAAAAACCCTAGGTGCTCTG
CTTTTCACTATGTTACGCTTTTAAAAGCTACTCGGATTGAATTAATTTGGAAAAAGAAAG
TCGATGGTTCATCATTTCGGTCTCTACTGTCGTCAATAGAGATTTCTCTTCGCACCAACA
ATGTTGAGTGGGTTTATGACTTTTTAGACCTCTAGGGCCTTGAGACACTAGTCGATCTAA
TGGTACAATGTATGCATTTTCTATCAGGACAGGACACGACACTCGGACCACGAATATTAT
ACGGGAGTAAATCCTCAGGCGAAACTTATCGGGGTCGTTACGAAATGTCTTGCAATGCAG
AAGTTCCTAACTTCATTCGTAATAGTGGCATAAAGTCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8018#0      -TCTAATGTTACAATGTATGC-ATTTTCTATCAGGGTTAGTCCGGTATT--ATGATCATT 56
consensus_8018#1      TTCGAATGTGCTGAAGGTCGTTGGCTTCTTCAAGAGGTCCCTCATTGGTTGAGAATAATG 60
                       ** *****    * *   *     ****   ** * *    *  *  *  *  ** ** 

consensus_8018#0      CCCTTCAGACAGGACACGACGCTCGGACCACGAATATT-ATACGGGAGTAAATCCTCAGG 115
consensus_8018#1      GTTATCAGCTAGCGTATTGTACT---ATGGGGAATGCCCATGCCTTAGAGAAACATCAGC 117
                          ****  **   *     **   *    ****    ** *   **  ** * **** 

consensus_8018#0      CGAAACTTATCGGGGTCGTTACGAAATGTCTTGCAA-TGCAGAAGTTCCT-AACTTCATT 173
consensus_8018#1      TTTCAAATGTTGGGAGTGGAACATCGAGTTCTGTGGGTATAAAAGATTTTGAAAGTCGTT 177
                          *  * * ***   *  **     **  **    *  * *** *  * **  ** **

consensus_8018#0      CGTAATAGTGGCATAAAGTCAAACCAGTTTTCACCAGACAATGCATTTTTACCTCCATCG 233
consensus_8018#1      GGAGATC-TTTTATGAATTCACTTGATTTATCAGCCGA----ACATATAAAACAAATTGA 232
                       *  **  *   ** ** ***    * ** *** * **     *** *  * *    *  

consensus_8018#0      ATTATTCACAGTAGCTGTTCACCAAAAGGCTCTCTACTCACTACATCGTTCTTAGACTTT 293
consensus_8018#1      ACTATT------AGATGAAGGGAAGAAGGCA---GAACTACTG--TCAAACTATGAAT-- 279
                      * ****      ** **      * *****     *   ***   **   **  ** *  

consensus_8018#0      CTGGAAGATTGCTTGCATCTGTCTCTTCGTTCACTTAAGGCCATATTGAATAATCAGAGA 353
consensus_8018#1      -CAAAAAACCCTAGGTGCTCTGCTTTTCACTATGTTACGCTTTTAAAAGCTACTCGGA-- 336
                          ** *      *       ** ***  *   *** *    **     ** ** **  

consensus_8018#0      GGGTGTAGAAGAGCTATGGAGCATGCACTTGTCATTAGTCTAGTAACTTTCTGTCTCCTA 413
consensus_8018#1      -----TTGAATTAATTTGGAAAAAGAA--AGTCGATGGTTCATCA--TTTCGGTCTCTAC 387
                           * ***    * ****  * * *   ***  * **  *  *  **** *****   

consensus_8018#0      CATCCTAATTATTCAACAAAAACGCTAGCACTAGACATGCTCACTGCATTGTGTCTAATT 473
consensus_8018#1      TGTC---GTCAATAGAGATTTCTCTTCGCACCAACAATGTTGAGTGGGTT---TATGACT 441
                        **    * * *  * *       * **** *   *** * * **  **   * * * *

consensus_8018#0      GAAGGTGGACACGTAAAAGTCTTGCAGTCCTTCGACAGGTTACGCGTTGTGATGGGTGAA 533
consensus_8018#1      TTT--TAGAC-CTCTAGGGCCTTG-AGACACTAGTCGATCTA-ATGGTACAATGTATGCA 496
                           * *** *   *  * **** ** *  * * *    **   * *   ***  ** *

consensus_8018#0      GGATTGAGATTTGAGCTTCTTTTGGCAGCATTCAGATACCACGAATCGCTTGATGTAGAA 593
consensus_8018#1      --TTTTCTATCAGGACAGGAC---ACGACACTCGGA--CCACGAATATTATACGGGAGTA 549
                         **   **  *  *         *  ** ** **  ********    *   * ** *

consensus_8018#0      AA-CTACAATCTAGATTTTGCAGTAAC-TTGCGTACAGTTTCTCAATATTATTGTTCATT 651
consensus_8018#1      AATCCTCAGGCGAAACTTATCGGGGTCGTTACGAAATGTCTTGCAATGCAGAAGTTCCTA 609
                      ** *  **  * * * **  * *   * ** ** *  ** *  ****      **** * 

consensus_8018#0      CACCAGAGAATATAAATTTACGAGTATATTTACAA 686
consensus_8018#1      ACTTCATTCGTAATAGTG---GCATAAAGTCAAA- 640
                                **  * *    *  ** * * * *