cluster # 8019

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Schistosoma mansoni
cluster # 8019 cluster # 8019 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8019#0 length = 754 sequences # 5

consensus_8019#1 length = 265 sequences # 1

consensusID : consensus_8019#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 754
fasta sequence

                              [TTTGTTTTTTTCACTTGGAATCGAACAAGTTAGACTCCCACTGGCGCAGTAGAGGCCAAAGTAGTATGTTTCTATAGGCGACGAGACTTGTCACCGAACTTGATACAGCTGGCCGACAAACATCAAA---AGTTAGGAACTTGCGGTGATGATACGCAACCGGATATACTGCACCAGATACATCATCGTGAATTGTTCCTTTCCCGACATCTGGAAACACTTCCAGCAACACATATTCGTGGAAAATGCACAGTTACTCTACATACTGAAACGGAACCTTATCATATCTACCTGACGAAAGATGACACTTTCTTCTTTCAATTAGTGTATGATCCGTTACAAAAAACTCTCCAAGCTGACCAAGGATCTATTCGGGAAGGTCCTCAATATCAAGCAGAGATTGAGCCTTACCATCCTTGTCTAGAATATTCCGCCGACGAATCTATACATGAACAGCTGCTCTGGCGACCAGATAACAATTTAACACCCTCAGATCTAGACTCATATCTCCTCTTAATTAGGTCTCTTGCTACATTGGGCAGGTCTTTTTATCCACCACATATTCTCCGTCAGCCAAACCTTACAATGTCTGCAGCTGCAGCGGCCAGAGATACCACACACCAGTTTGCTTTGGATACTTTACATTCTGCTAATTATAATATCTCTCAAGCACTTCAAATGTTGGCTCCTCGTGGACAGCCGATCTTGAAG-TTGGNATGAATGGAGCAGTGGTTAGCAAGTGAAGGCAATCTTTTTG]

[+] EMBL CD165741             [TTTGTTTTTTTCACTTGGAATCGAACAAGTTAGACTCCCACTGGCGCAGTAGAGGCCAAAGTAGTATGTTTCTATAGGCGACGAGACTTGTCACCGAACTTGATACAGCTGGCCGACAAACATCAAA   AGTTAGGAACTTGCGGTGATGATACGCAACCGGATATACTGCACCAGATACATCATCGTGAATTGTTCCTTTCCCGACATCTGGAAACACTTCCAGCAACACATATTCGTGGAAAATGCACAGTTACTCTACATACTGAAACGGAACCTTATCATATCTACCTGACGAAAGATGACACTTTCTTCTTTCAATTAGTGTATGATCCGTTACAAAAAACTCTCCAAGCTGACCAAGGATCTATTCGGGAAGGTCCTCAATATCAAGCAGAGATCGAGCCTTACCATCCTTGTCTAGAATATTCCGCCGACGAATCTATACATGAACAGCTGCTCTGGCGACCAGATAACAATTTAACACCCTCAGATCTAGACTCATATCTCCTCTTAATTAGGTCTCTTGCTACATTGGGCAGGTCTTTTTATCCACCACATATTCTCCGTCAGCCANACCTTACAATGTCTGCAGCTGCAG                                                                                                                                                             ]
[+] EMBL CD164528             [                                                                                                AACTTGATACAGCTGGCCGACAAACATCAAAAAGAGTTAGGAACTTGCGGTGATGATACGCAACCGGATATACTGCACCAGATACATCATCGTGAATTGTTCCTTTCCCGACATCTGGAAACACTTCCAGCAACACATATTCGTGGAAAATGCACAGTTACTCTACATACTGAAACGGAACCTTATCATATCTACCTGACGAAAGATGACACTTTCTTCTTTCAATTAGTGTATGATCCGTTACAAAAAACTTTCCAAGCTGACCAAGGATCTATTCGGGAAGGTCCTCAATATCAAGCAGAGATTGAGCCTTACCATCCTTGTCTAGAATATTCCGCCGACGAATCTATACATGAACAGCTGCTCTGGCGACCAGATAACAATTTAACACCCTCAGATCTAGACTCATATCTCC                                                                                                                                                                                                                                                       ]
[+] EMBL CD165740             [                                                                                                                                                                                                TTGTTCCTTTCCCGACATCTGGAAACACTTCCAGCAACACATATTCGTGGAAAATGCACAGTTACTCTACATACTGAAACGGAACCTTATCATATCTACCTGACGAAAGATGACACTTTCTTCTTTCAATTAGTGGATGATCCGTTACAAAAAACTCTCCAAGCTGACCAAGGATCTATTCGGTAAGGTCCTCAATATCAAGCAGAGATCGAGCCTTACCATCCTTGTCTAGAATATTCCGCCGACGAATCT                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD181449             [                                                                                                                                                                                                                                                                                                                                                                                TATTCGGGAAGGTCCTCAATATCAAGCAGAGATTGAGCCTTACCATCCTTGTCTAGAATATTCCGCCGACGAATCTATACATGAACAGCTGCTCTGGCGACCAGATAACAATTTAACACCCTCAGATCTAGACTCATATCTCCTCTTAATTAGGTCTCTTGCTACATTGGGCAGGTCTTTTTATCCACCACATATTCTCCGTCAGCCAAACCTTACAATGTCTGCAGCTGCAGCGGCCAGAGATACCACACACCAGTTTGCTTTGGATACTTTACATTCTGCTAATTATAATATCTCTCAAGCACTTCAAATGTTGGCTCCTCGTGGACAGCCGATCTTGAAG TTGGNATGAATGGAGCAGTGGTTAGCAAGTGAAGGCAATCTTTTTG]
[+] EMBL CD181396             [                                                                                                                                                                                                                                                                                                                                                                                TATTCGGGAAGGTCCTCAATATCAAGCAGAGATTGAGCCTTACCATCCTTGTCTAGAATATTCCGCCGACGAATCTATACATGAACAGCTGCTCTGGCGACCAGATAACAATTTAACACCCTCAGATCTAGACTCATATCTCCTCTTAATTAGGTCTCTTGCTACATTGGGCAGGTCTTTTTATCCACCACATATTCTCCGTCAGCCAAACCTTACAATGTCTGCAGCTGCAGCGGCCAGAGATACCACACACCAGTTTGCTTTGGATACTTTACATTCTGCTAATTATAATATCTCTCAAGCACTTCAAATGTTGGCTCCTCGTGGACAGCCGATCTTGAAGNNTGG ATG                                      ]




>consensus_8019#0
TTTGTTTTTTTCACTTGGAATCGAACAAGTTAGACTCCCACTGGCGCAGTAGAGGCCAAA
GTAGTATGTTTCTATAGGCGACGAGACTTGTCACCGAACTTGATACAGCTGGCCGACAAA
CATCAAAAGTTAGGAACTTGCGGTGATGATACGCAACCGGATATACTGCACCAGATACAT
CATCGTGAATTGTTCCTTTCCCGACATCTGGAAACACTTCCAGCAACACATATTCGTGGA
AAATGCACAGTTACTCTACATACTGAAACGGAACCTTATCATATCTACCTGACGAAAGAT
GACACTTTCTTCTTTCAATTAGTGTATGATCCGTTACAAAAAACTCTCCAAGCTGACCAA
GGATCTATTCGGGAAGGTCCTCAATATCAAGCAGAGATTGAGCCTTACCATCCTTGTCTA
GAATATTCCGCCGACGAATCTATACATGAACAGCTGCTCTGGCGACCAGATAACAATTTA
ACACCCTCAGATCTAGACTCATATCTCCTCTTAATTAGGTCTCTTGCTACATTGGGCAGG
TCTTTTTATCCACCACATATTCTCCGTCAGCCAAACCTTACAATGTCTGCAGCTGCAGCG
GCCAGAGATACCACACACCAGTTTGCTTTGGATACTTTACATTCTGCTAATTATAATATC
TCTCAAGCACTTCAAATGTTGGCTCCTCGTGGACAGCCGATCTTGAAGTTGGNATGAATG
GAGCAGTGGTTAGCAAGTGAAGGCAATCTTTTTG

consensusID : consensus_8019#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 265
fasta sequence

                              [CTTCGAAGTTGCTGCAGCATCACCATATCACATCAGAAATATCGAAGAATTGAATAAGACTCCCACTGGCGCAGTAGAGGCCAAAGTAGTATGTTTCTATAGGCGACGAGACTTGTCACCGAACTTGATACAGCTGGCCGACAAACATCAAAAAGAGTTAGGAACTTGCGGTGATGATACGCAACCGGATATACTGCACCAGATACATCATCGTGAATTGTTCCTTTCCCGACATCTGGAAACACTTCCAGCAACACATATTCGT]

[+] EMBL CD063311             [CTTCGAAGTTGCTGCAGCATCACCATATCACATCAGAAATATCGAAGAATTGAATAAGACTCCCACTGGCGCAGTAGAGGCCAAAGTAGTATGTTTCTATAGGCGACGAGACTTGTCACCGAACTTGATACAGCTGGCCGACAAACATCAAAAAGAGTTAGGAACTTGCGGTGATGATACGCAACCGGATATACTGCACCAGATACATCATCGTGAATTGTTCCTTTCCCGACATCTGGAAACACTTCCAGCAACACATATTCGT]




>consensus_8019#1
CTTCGAAGTTGCTGCAGCATCACCATATCACATCAGAAATATCGAAGAATTGAATAAGAC
TCCCACTGGCGCAGTAGAGGCCAAAGTAGTATGTTTCTATAGGCGACGAGACTTGTCACC
GAACTTGATACAGCTGGCCGACAAACATCAAAAAGAGTTAGGAACTTGCGGTGATGATAC
GCAACCGGATATACTGCACCAGATACATCATCGTGAATTGTTCCTTTCCCGACATCTGGA
AACACTTCCAGCAACACATATTCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8019#0      -------------------TTTGTTTTTTTCACTTGGAAT--CGAACAA----GTTAGAC 35
consensus_8019#1      CTTCGAAGTTGCTGCAGCATCACCATATCACATCAGAAATATCGAAGAATTGAATAAGAC 60
                                         *     * *  **   * ***  **** **     * ****

consensus_8019#0      TCCCACTGGCGCAGTAGAGGCCAAAGTAGTATGTTTCTATAGGCGACGAGACTTGTCACC 95
consensus_8019#1      TCCCACTGGCGCAGTAGAGGCCAAAGTAGTATGTTTCTATAGGCGACGAGACTTGTCACC 120
                      ************************************************************

consensus_8019#0      GAACTTGATACAGCTGGCCGACAAACATCAAAA---GTTAGGAACTTGCGGTGATGATAC 152
consensus_8019#1      GAACTTGATACAGCTGGCCGACAAACATCAAAAAGAGTTAGGAACTTGCGGTGATGATAC 180
                      *********************************   ************************

consensus_8019#0      GCAACCGGATATACTGCACCAGATACATCATCGTGAATTGTTCCTTTCCCGACATCTGGA 212
consensus_8019#1      GCAACCGGATATACTGCACCAGATACATCATCGTGAATTGTTCCTTTCCCGACATCTGGA 240
                      ************************************************************

consensus_8019#0      AACACTTCCAGCAACACATATTCGTGGAAAATGCACAGTTACTCTACATACTGAAACGGA 272
consensus_8019#1      AACACTTCCAGCAACACATATTCGT----------------------------------- 265
                      *************************                                   

consensus_8019#0      ACCTTATCATATCTACCTGACGAAAGATGACACTTTCTTCTTTCAATTAGTGTATGATCC 332
consensus_8019#1      ------------------------------------------------------------
                                                                                  

consensus_8019#0      GTTACAAAAAACTCTCCAAGCTGACCAAGGATCTATTCGGGAAGGTCCTCAATATCAAGC 392
consensus_8019#1      ------------------------------------------------------------
                                                                                  

consensus_8019#0      AGAGATTGAGCCTTACCATCCTTGTCTAGAATATTCCGCCGACGAATCTATACATGAACA 452
consensus_8019#1      ------------------------------------------------------------
                                                                                  

consensus_8019#0      GCTGCTCTGGCGACCAGATAACAATTTAACACCCTCAGATCTAGACTCATATCTCCTCTT 512
consensus_8019#1      ------------------------------------------------------------
                                                                                  

consensus_8019#0      AATTAGGTCTCTTGCTACATTGGGCAGGTCTTTTTATCCACCACATATTCTCCGTCAGCC 572
consensus_8019#1      ------------------------------------------------------------
                                                                                  

consensus_8019#0      AAACCTTACAATGTCTGCAGCTGCAGCGGCCAGAGATACCACACACCAGTTTGCTTTGGA 632
consensus_8019#1      ------------------------------------------------------------
                                                                                  

consensus_8019#0      TACTTTACATTCTGCTAATTATAATATCTCTCAAGCACTTCAAATGTTGGCTCCTCGTGG 692
consensus_8019#1      ------------------------------------------------------------
                                                                                  

consensus_8019#0      ACAGCCGATCTTGAAGTTGGNATGAATGGAGCAGTGGTTAGCAAGTGAAGGCAATCTTTT 752
consensus_8019#1      ------------------------------------------------------------
                                                                                  

consensus_8019#0      TG 754
consensus_8019#1      --