These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8019#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 754 fasta sequence [TTTGTTTTTTTCACTTGGAATCGAACAAGTTAGACTCCCACTGGCGCAGTAGAGGCCAAAGTAGTATGTTTCTATAGGCGACGAGACTTGTCACCGAACTTGATACAGCTGGCCGACAAACATCAAA---AGTTAGGAACTTGCGGTGATGATACGCAACCGGATATACTGCACCAGATACATCATCGTGAATTGTTCCTTTCCCGACATCTGGAAACACTTCCAGCAACACATATTCGTGGAAAATGCACAGTTACTCTACATACTGAAACGGAACCTTATCATATCTACCTGACGAAAGATGACACTTTCTTCTTTCAATTAGTGTATGATCCGTTACAAAAAACTCTCCAAGCTGACCAAGGATCTATTCGGGAAGGTCCTCAATATCAAGCAGAGATTGAGCCTTACCATCCTTGTCTAGAATATTCCGCCGACGAATCTATACATGAACAGCTGCTCTGGCGACCAGATAACAATTTAACACCCTCAGATCTAGACTCATATCTCCTCTTAATTAGGTCTCTTGCTACATTGGGCAGGTCTTTTTATCCACCACATATTCTCCGTCAGCCAAACCTTACAATGTCTGCAGCTGCAGCGGCCAGAGATACCACACACCAGTTTGCTTTGGATACTTTACATTCTGCTAATTATAATATCTCTCAAGCACTTCAAATGTTGGCTCCTCGTGGACAGCCGATCTTGAAG-TTGGNATGAATGGAGCAGTGGTTAGCAAGTGAAGGCAATCTTTTTG] [+] EMBL CD165741 [TTTGTTTTTTTCACTTGGAATCGAACAAGTTAGACTCCCACTGGCGCAGTAGAGGCCAAAGTAGTATGTTTCTATAGGCGACGAGACTTGTCACCGAACTTGATACAGCTGGCCGACAAACATCAAA AGTTAGGAACTTGCGGTGATGATACGCAACCGGATATACTGCACCAGATACATCATCGTGAATTGTTCCTTTCCCGACATCTGGAAACACTTCCAGCAACACATATTCGTGGAAAATGCACAGTTACTCTACATACTGAAACGGAACCTTATCATATCTACCTGACGAAAGATGACACTTTCTTCTTTCAATTAGTGTATGATCCGTTACAAAAAACTCTCCAAGCTGACCAAGGATCTATTCGGGAAGGTCCTCAATATCAAGCAGAGATCGAGCCTTACCATCCTTGTCTAGAATATTCCGCCGACGAATCTATACATGAACAGCTGCTCTGGCGACCAGATAACAATTTAACACCCTCAGATCTAGACTCATATCTCCTCTTAATTAGGTCTCTTGCTACATTGGGCAGGTCTTTTTATCCACCACATATTCTCCGTCAGCCANACCTTACAATGTCTGCAGCTGCAG ] [+] EMBL CD164528 [ AACTTGATACAGCTGGCCGACAAACATCAAAAAGAGTTAGGAACTTGCGGTGATGATACGCAACCGGATATACTGCACCAGATACATCATCGTGAATTGTTCCTTTCCCGACATCTGGAAACACTTCCAGCAACACATATTCGTGGAAAATGCACAGTTACTCTACATACTGAAACGGAACCTTATCATATCTACCTGACGAAAGATGACACTTTCTTCTTTCAATTAGTGTATGATCCGTTACAAAAAACTTTCCAAGCTGACCAAGGATCTATTCGGGAAGGTCCTCAATATCAAGCAGAGATTGAGCCTTACCATCCTTGTCTAGAATATTCCGCCGACGAATCTATACATGAACAGCTGCTCTGGCGACCAGATAACAATTTAACACCCTCAGATCTAGACTCATATCTCC ] [+] EMBL CD165740 [ TTGTTCCTTTCCCGACATCTGGAAACACTTCCAGCAACACATATTCGTGGAAAATGCACAGTTACTCTACATACTGAAACGGAACCTTATCATATCTACCTGACGAAAGATGACACTTTCTTCTTTCAATTAGTGGATGATCCGTTACAAAAAACTCTCCAAGCTGACCAAGGATCTATTCGGTAAGGTCCTCAATATCAAGCAGAGATCGAGCCTTACCATCCTTGTCTAGAATATTCCGCCGACGAATCT ] [+] EMBL CD181449 [ TATTCGGGAAGGTCCTCAATATCAAGCAGAGATTGAGCCTTACCATCCTTGTCTAGAATATTCCGCCGACGAATCTATACATGAACAGCTGCTCTGGCGACCAGATAACAATTTAACACCCTCAGATCTAGACTCATATCTCCTCTTAATTAGGTCTCTTGCTACATTGGGCAGGTCTTTTTATCCACCACATATTCTCCGTCAGCCAAACCTTACAATGTCTGCAGCTGCAGCGGCCAGAGATACCACACACCAGTTTGCTTTGGATACTTTACATTCTGCTAATTATAATATCTCTCAAGCACTTCAAATGTTGGCTCCTCGTGGACAGCCGATCTTGAAG TTGGNATGAATGGAGCAGTGGTTAGCAAGTGAAGGCAATCTTTTTG] [+] EMBL CD181396 [ TATTCGGGAAGGTCCTCAATATCAAGCAGAGATTGAGCCTTACCATCCTTGTCTAGAATATTCCGCCGACGAATCTATACATGAACAGCTGCTCTGGCGACCAGATAACAATTTAACACCCTCAGATCTAGACTCATATCTCCTCTTAATTAGGTCTCTTGCTACATTGGGCAGGTCTTTTTATCCACCACATATTCTCCGTCAGCCAAACCTTACAATGTCTGCAGCTGCAGCGGCCAGAGATACCACACACCAGTTTGCTTTGGATACTTTACATTCTGCTAATTATAATATCTCTCAAGCACTTCAAATGTTGGCTCCTCGTGGACAGCCGATCTTGAAGNNTGG ATG ] consensusID : consensus_8019#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence [CTTCGAAGTTGCTGCAGCATCACCATATCACATCAGAAATATCGAAGAATTGAATAAGACTCCCACTGGCGCAGTAGAGGCCAAAGTAGTATGTTTCTATAGGCGACGAGACTTGTCACCGAACTTGATACAGCTGGCCGACAAACATCAAAAAGAGTTAGGAACTTGCGGTGATGATACGCAACCGGATATACTGCACCAGATACATCATCGTGAATTGTTCCTTTCCCGACATCTGGAAACACTTCCAGCAACACATATTCGT] [+] EMBL CD063311 [CTTCGAAGTTGCTGCAGCATCACCATATCACATCAGAAATATCGAAGAATTGAATAAGACTCCCACTGGCGCAGTAGAGGCCAAAGTAGTATGTTTCTATAGGCGACGAGACTTGTCACCGAACTTGATACAGCTGGCCGACAAACATCAAAAAGAGTTAGGAACTTGCGGTGATGATACGCAACCGGATATACTGCACCAGATACATCATCGTGAATTGTTCCTTTCCCGACATCTGGAAACACTTCCAGCAACACATATTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8019#0 -------------------TTTGTTTTTTTCACTTGGAAT--CGAACAA----GTTAGAC 35 consensus_8019#1 CTTCGAAGTTGCTGCAGCATCACCATATCACATCAGAAATATCGAAGAATTGAATAAGAC 60 * * * ** * *** **** ** * **** consensus_8019#0 TCCCACTGGCGCAGTAGAGGCCAAAGTAGTATGTTTCTATAGGCGACGAGACTTGTCACC 95 consensus_8019#1 TCCCACTGGCGCAGTAGAGGCCAAAGTAGTATGTTTCTATAGGCGACGAGACTTGTCACC 120 ************************************************************ consensus_8019#0 GAACTTGATACAGCTGGCCGACAAACATCAAAA---GTTAGGAACTTGCGGTGATGATAC 152 consensus_8019#1 GAACTTGATACAGCTGGCCGACAAACATCAAAAAGAGTTAGGAACTTGCGGTGATGATAC 180 ********************************* ************************ consensus_8019#0 GCAACCGGATATACTGCACCAGATACATCATCGTGAATTGTTCCTTTCCCGACATCTGGA 212 consensus_8019#1 GCAACCGGATATACTGCACCAGATACATCATCGTGAATTGTTCCTTTCCCGACATCTGGA 240 ************************************************************ consensus_8019#0 AACACTTCCAGCAACACATATTCGTGGAAAATGCACAGTTACTCTACATACTGAAACGGA 272 consensus_8019#1 AACACTTCCAGCAACACATATTCGT----------------------------------- 265 ************************* consensus_8019#0 ACCTTATCATATCTACCTGACGAAAGATGACACTTTCTTCTTTCAATTAGTGTATGATCC 332 consensus_8019#1 ------------------------------------------------------------ consensus_8019#0 GTTACAAAAAACTCTCCAAGCTGACCAAGGATCTATTCGGGAAGGTCCTCAATATCAAGC 392 consensus_8019#1 ------------------------------------------------------------ consensus_8019#0 AGAGATTGAGCCTTACCATCCTTGTCTAGAATATTCCGCCGACGAATCTATACATGAACA 452 consensus_8019#1 ------------------------------------------------------------ consensus_8019#0 GCTGCTCTGGCGACCAGATAACAATTTAACACCCTCAGATCTAGACTCATATCTCCTCTT 512 consensus_8019#1 ------------------------------------------------------------ consensus_8019#0 AATTAGGTCTCTTGCTACATTGGGCAGGTCTTTTTATCCACCACATATTCTCCGTCAGCC 572 consensus_8019#1 ------------------------------------------------------------ consensus_8019#0 AAACCTTACAATGTCTGCAGCTGCAGCGGCCAGAGATACCACACACCAGTTTGCTTTGGA 632 consensus_8019#1 ------------------------------------------------------------ consensus_8019#0 TACTTTACATTCTGCTAATTATAATATCTCTCAAGCACTTCAAATGTTGGCTCCTCGTGG 692 consensus_8019#1 ------------------------------------------------------------ consensus_8019#0 ACAGCCGATCTTGAAGTTGGNATGAATGGAGCAGTGGTTAGCAAGTGAAGGCAATCTTTT 752 consensus_8019#1 ------------------------------------------------------------ consensus_8019#0 TG 754 consensus_8019#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||