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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8025#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 625 fasta sequence
[ATATATTAAAAAGCTACATGTGAACAATAATAATAATAATATATTTCCGCAATAGCAGGTACACGCCATTTTTACAGGCATGGTCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGACTCTACAATCAAAATGAGTGATTTAACGAATATAAGGATTAAAGATAAAGTGACACAGTTAAAAAGATTTTCGTCACTAGATTGGTTATCAAAGCACTATAAATAACCGTTAAGCTATAGCAAATAATATAGCCGAACAGGAAATCCTCACCGCTGAAATTATCTTGAACTGTTTCTCAATGAGTTAGTAGATGATACCCAGTTCTATCTATTGCACTCTTATTAATTATTCTTTTGGGAAATATCATAACTTATTCGCGACTAAACCCACTAAGGTTATTTAGACATTTTCTTGGCGTTGATGCTTCGGTTTTGTTGGTTATGAGGCTTTTGTACTAAGGATAACATTTTCGGTTTACGTTTTTTCTACTTCTCAAATCATAAATGTACGTATATTTTCTATGCTGAATATCCTTTCCGGTAATTTTCAGAGTTTGGTAACATCTAAATGTAACAATTAGTGAACTCAAGAGCCAGTAGAACC]
[+] EMBL CD120005 [ATATATTAAAAAGCTACATGTGAACAATAATAATAATAATATATTTCCGCAATAGCAGGTACACGCCATTTTTACAGGCATGGTCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGACTCTACAATCAAAATGAGTGATTTAACGAATATAAGG ]
[+] EMBL CD074186 [ AATAATAATTTATTTCCGCAATAGCAGGTACACGCCATTTTTACAGGCATGGTCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGACTCTACAATCAAAATGAGTGATTTAACGAATATAAGGATTAAAGATAAAGTGACACAGTTAAAAAGATTTTCGTCACTAGATTGGTTATCAAAGCACTATAAATAACCGTTAAGCTATAGCAAATAATATAGCCGAACAGGAAATCCTCACCGCTGAAATTATCTTGAACTGTTTCTCAATGAGTTAGTAGATGATACCCAGTTCTATCTATTGCACTCTTATTAATTATTCTTTTGGGAAATATCATAACTTATTCGCGACTAAACCCACTAAGGTTATTTAGACATTTTCTTGGCGTTGATGCTTCGGTTTTGTTGGTTATGAGGCTTTTGTACTAAGGATAACATTTTCGGTTTACGTTTTTTCTACTTCTCAAATCATAAATGTACGTATATTTTCTATGCTGAATATCCTTTCCGGTAATTTTCAGAGTTTGGTAACATCTAAATGTAACAATTAGTGAACTCAAGAGCCAGTAGAACC]
[-] EMBL CD120111 [ GTCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGACTCTACAATCAAAATGAGTGATTTAACGAATATAAGGATTAAAGATAAAGTGACACAGTTAAAAAGATTTTCGTCACTAGATTGGTTATCAAAGCACTATAAATAACCGTTAAGCTATAGCAAATAATATAGCCGAACAGGAAATCCTCACCGCTGAAATTATCTTGAACTGTTTCTCAATGAGTTAGTAGATGATACCCAGTTCTATCAAATGCACTCTTATTAATTATTCTTTTGGGAAATATCATAACTTATTCGCGACTAAACCCACCAAGGTTATTTAGACATTTTCTTGGCGTGGGTGCTTCGGTT ]
[-] EMBL CD120498 [ TTAGACTCTACAATCAAAATGAGTGATTNAACGAATATAAGGATTAAAGATAAAGTGACACAGTTAAAAAGATTTTCGTCACTAGATTGGTTATCAAAGCACTATAAATAACCGTTAAGCTATAGCAAATAATATAGCCGAACAGGAAATCCTCACCGCTGAAATTATCTTGAACTGTTTCTCAATGAGTTAGTAGATGATACCCAGTTCTATCTATTGCACTCTTATTAATTATCCTTTTGGGAAATATCATAAC TATTCGCGACTAAACCCACTAAGG TATTTAGACATTTc ]
consensusID : consensus_8025#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 426 fasta sequence
[GTTCTATTAGTAGAAGAAACCGGATTAGTAGCCAATTAATCGTTATTTATTTCGTGAGAGTGCACAAAGTCAAGCGCGAGACTATCTTTATCAAACACACTAAGTTTTTCAACGTTCAATAATAGTCAAATATAATCTCGAATGGCAACATGAATAACTGTTATGTCCATCTGACATCCTTCATAACATCTAGAGAATTTTTGGTGTTATTCGTCAATTCAGCTATTAATAATAATATATTTCTGCGACAGCAGGTACACACCATTTTTACAGGCATGATCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGTAATTATAATCTATAAAAGTTGATAGCAGTTCATTCGTTCAGATATAATGTGTTTTCATAAGAATAGTTTCCAAAGGGGCATGGCGTCCA]
[-] EMBL CD088772 [GTTCTATTAGTAGAAGAAACCGGATTAGTAGCCAATTAATCGTTATTTATTTCGTGAGAGTGCACAAAGTCAAGCGCGAGACTATCTTTATCAAACACACTAAGTTTTTCAACGTTCAATAATAGTCAAATATAATCTCGAATGGCAACATGAATAACTGTTATGTCCATCTGACATCCTTCATAACATCTAGAGAATTTTTGGTGTTATTCGTCAATTCAGCTATTAATAATAATATATTTCTGCGACAGCAGGTACACACCATTTTTACAGGCATGATCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAAGGTTGTTTAGTAATTATAATCTATAAAAGTTGATAGCAGTTCATTCGTTCAGATATAATGTGTTTTCATAAGAATAGTTTCCAAAGGGGCATGGCGTCCA]
[+] EMBL CD089234 [ TTACAGGCATGATCTACAATTTACAACATATACTGGTTCACAGTATGCATCCTGAGCAGGGTTGTTTAGTAATTATAATCTATAAAAGTTGATAGCAGTTCATTCGTTCAGATATAATGTGTTTTCATAAGAATAGTTTCCAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8025#0 ATATATTAAAAAGCTACATGTGAACAATAATAATAATAATATATTTCCGCAATAGC-AGG 59
consensus_8025#1 -----------------------GTTCTATTAGTAG-AAGAAACCGGATTAGTAGCCAAT 36
** ** ** ** * * * **** *
consensus_8025#0 TACACGCCATTTTTACAGGCATGGTCTACAATTTACAACATATACTGGTTCACAGTATGC 119
consensus_8025#1 TAATCGTTATTTATTTCGTGAGAGTGCACAAAGTCAAGCGCGAGACTATCTTTATCAAAC 96
** ** **** * * * ** **** * * * * * * *
consensus_8025#0 ATCCCAAGCAAGGTTGTTTAGACTCTACAATCAAAATGAGTGATTTAACGAATATAAGGA 179
consensus_8025#1 ACACTAAGT----TTTTCAACGTTCAATAATAGTCAAATATAATCT--CGAATGGCAACA 150
* * *** ** * * ** * *** * * ** * ***** * *
consensus_8025#0 TTAAAGATAAAGTGACACAGTTAAAAAGATTTTCGTCACTAGATTGGTTATCAAAGCACT 239
consensus_8025#1 TGAATAACTGTTATGTCCATCTGACATCCTTCATAACATCTAGAGAATTTTTG--GTGTT 208
* ** * ** * * * ** ** ** * * *
consensus_8025#0 ATAAATAACCGTTAAGCTATAGCAAATAATATAGCCG---AACAGGAAATCCTCACCGCT 296
consensus_8025#1 ATTCGT--CAATTCAGCTATTAATAATAATATATTTCTGCGACAGCAGGTACACACCATT 266
** * * ** ****** ********* **** * * * **** *
consensus_8025#0 GAAATTATCTTGAACTGTTTCTCA----ATGAGTTAGTAGATGATACCCAGTTCTATCTA 352
consensus_8025#1 TTTACAGGCATGATCTACAATTTACAACATATACTGGTTCACAGTATGCATCCCAAGCAA 326
* * *** ** * * ** * ** * ** ** * * * *
consensus_8025#0 TTGCACTCTTATTAATTATTCTTTTGGGAAAT--ATCATAACTTATTCGCGACTAAACCC 410
consensus_8025#1 --GGTTGTTTAGTAATTATAATCTATAAAAGTTGATAGCAGTTCATTCGT--TCAGATAT 382
* *** ******* * * ** * ** * * ***** * *
consensus_8025#0 ACTAAGGTTATTTAGACATTTTCTTGGCGTTGATGCTTCGGTTTTGTTGGTTATGAGGCT 470
consensus_8025#1 AATGTGTTTTCATAAGAATAGTTTC--CAAAGGGGCATGGCGTCCA-------------- 426
* * * ** ** ** * * * * ** * * *
consensus_8025#0 TTTGTACTAAGGATAACATTTTCGGTTTACGTTTTTTCTACTTCTCAAATCATAAATGTA 530
consensus_8025#1 ------------------------------------------------------------
consensus_8025#0 CGTATATTTTCTATGCTGAATATCCTTTCCGGTAATTTTCAGAGTTTGGTAACATCTAAA 590
consensus_8025#1 ------------------------------------------------------------
consensus_8025#0 TGTAACAATTAGTGAACTCAAGAGCCAGTAGAACC 625
consensus_8025#1 -----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||