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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1373 fasta sequence
[GTGCTGCTCACTTTAGCAGAACAAATCGGCACTCTAGTCCCATATGTAGGCGGTCCTGAGTATGCTCACTCACTTCTTCCTCCACTTGAGAGTCTTGCAGCAGCTGAAGAAACGGTTGTACGTGATAGGGCTGTAGAGGCGCTTAGAAAACTTGCACCAGACCATACTACAGAAGCAATGGAAAAATATTTCAACCCATTGTTACATCGCCTAGCTACTGGTGATTGGTTTACAAGCCGAACCTCTGCATGTGCGCTCTTTAGTGTGGTATATCCTAGAGTACGGAGCTCAAAACGATGGGAATTACTTGATTTTCTTAGAAGACTCGCCAAGGATGAAACGCCAATGGTCAGAAGAGCAGTTGCTGCCCGACTAGGTGAACCAGCACTAGCCATGTCAGTAGGTCAGTCTTCTG-AAAACCTAGTGCTGATGGAG-AACATCAAGTCAGATATCTGAGCATAATTCAAGTAGTATGACCAATTC-ATCACTGAATCG-AAATGTTAACAAATGAAGTGGTTAGTTTGAACGGTGGTCAAGTTAGTTATGGAGTTACTGCTGACGAACGTTTGACCAATGATAGCATAGCCGAAAAACCATCGACTCATGCAAACCCTCCTCAATCTGATGATTTCACTCTAGATCCTGAAAAAGAACGCAGTTATATTATTACTATACTTGTTCCCTTATTTGTTCGACTAGTTGATGATGAACAAGAGTCTGTACGCCTTATGGCAGTTGAATCTATTGTCCAATTGGCACAAGCATTGGGACCTGAAGAATCTGAAGGATATTTAATTGATCTCATCCAACAAGCTACGACTGATAGATCTTGGCGTGTTCGATGTGTTGTAGCCGATAAATTTACAGAGATTCAGACAGCTATGGGATTACGAGTTTCACGTGAACGATTGGTGCCTTTCTTCATGAAACTACTTCATGATGAAGAAGCTGAAGTACGAGCATTTGCTGCTGGAAAAGTAAAGGCATTTGCCAAATGTCTACTAGGTTTACCAGTTGATGCCGATATTAATACTACTGATAAAACTATTAATTCTGATACAAAAGATTGTAAAAATTCTTCTACAACAATAACATCAGATAATAAAATAATGGAAATTGATGAGAAATTCGAATCGGTCAATGATCTCAACGATAATAATAGTTTAGGATCAAAAGATGATATAATCATGTTACAATTATTACCAGCAATTAAAAGTCTTACAAATGAATCAAATACACATGTTAAATCTTCATTAGCTAGTGCTATACTTGGTTTAGCTCCATTAATTGGTAAAAATTTAACAATTGAACATTTATTACCTATATTTCTTACTCAATTAAATGATGATAATCCAGAAGTTCGATTAAATGTA]
[+] EMBL CD154189 [GTGCTGCTCACTTTAGCAGAACAAATCGGCACTCTAGTCCCATATGTAGGCGGTCCTGAGTATGCTCACTCACTTCTTCCTCCACTTGAGAGTCTTGCAGCAGCTGAAGAAACGGTTGTACGTGATAGGGCTGTAGAGGCGCTTAGAAAACTTGCACCAGACCATACTACAGAAGCAATGGAAAAATATTTCAACCCATTGTTACATCGCCTAGCTACTGGTGATTGGTTTACAAGCCGAACCTCTGCATGTGCGCTCTTTAGTGTGGTATATCCTAGAGTACGGAGCTCAAAACGATGGGAATTACTTGATTTTCTTAGAAGACTCGCCAAGGATGAAACGCCAATGGTCAGAAGAGCAGTTGCTGCCCGACTAGGTGAACCAGCACTAGCCATGTCAGTAGGTCAGTCTTCTG AAAACCTAGTGCTGATGGAG AACATCAAGTCAGATATCTGAGCATAATTCAAGTAGTATGACCAATTC ATCACTGAATCG AAATGTT ACCAATGAAGT GTTAGTTTG ACCGTGGGC AGTTAG TATGGAGTac ]
[+] EMBL CD170231 [ TTGATTTTCTTAGAAGACTCGCCAAGGATGAAACGCCAATGGTCAGAAGAGCAGTTGCTGCCCGACTAGGTGAACTAGCACTAGCCATGTCAGTAGGTCAGTCTTCTGAAAAACCTAGTGCTGATGGAGAAACATCAAGTCAGATATCTGAGCATAATTCAAGTAGTATGACCAATTCTATCACTGAATCGAAAATGTTAACAAATGAAGTGGTTAGTTTGAACGGTGGTCAAGTTAGTTATGGAGTTACTGCTGACGAACGTTTGACCAATGATA ]
[+] EMBL CD187406 [ TGTTAACAAATGAAGTGGTTAGTTTGAACGGTGGTCAAGTTAGTTATGGAGTTACTGCTGACGAACGTTTGACCAATGATAGCATAGCCGAAAAACCATCGACTCATGCAAACCCTCCTCAATCTGATGATTTCACTCTAGATCCTGAAAAAGAACGCAGTTATATTATTACTATACTTGTTCCCTTATTTGTTCGACTAGTTGATGATGAACAAGAGTCTGTACGCCTTATGGCAGTTGAATCTATTGTCCAATTGGCACAAGCATTGGGACCTGAAGAATCTGAAGGATATTTAATTGATCTCATCCAACAAGCTACGACTGATAGATCTTGGCGTGTTCGATGTGTTGTAGCCGATAAATTTACAGAGATTCAGACAGCTATGGGATTACGAGTTTCACGTGAACGATTGGTGCCTTTCTTCATGAAACTACTTCATGATGAAGAAGCTGAAGTACGA ]
[+] EMBL CD129942 [ GATGAACAAGAGTCTGTACGCCTTACGGCAGTTGAATCTATTGTCCAATTGGCACAAGCATTGGGACCTGAAGAATCTGAAGGATATTTAATTGATCTCATCCAACAAGCTACGACTGATAGATCTTGGCGTGTTCGATGTGTTGTAGCCGATAAATTTACAGAGATTCAGACAGCTATGGGATTACGAGTTTCACGTGAACGATTGGTGCCTTTCTTCATGAAACTACTTCATGATGAAGAAGCTGAAGTACGAGCATTTGCTGCTGGAAAAGTAAAGGCATTTGCCAAATGTCTACTAGGTTTACCAGTTGATGCCGATATTAATACTACTGATAAAACTATTAATTCTGATACAAAAGATTGTAAAAATTCTTCTACAACAATAACATCAGATAATAAAATAATGGAAATTGATGAGAAATTCGAATCGGTCAATGATCTCAACGATAATAATAGTTTAGGATCAAAAGATGATATAATCATGTTACAATTATTACCAGCAATTAAAAGTCTTACAAATGAATCAAATACACATGTTAAATCTTCATTAGCTAGTGCTATACTTGGTTTAGCTCCATTAATTGGTAAAAATTTAACAATTGAACATTTATTACCTATATTTCTTACTCAATTAAATGATGATAATCCAGAAGTTCGATTAAATGTA]
consensusID : consensus_8026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence
[AGCATCTCAGTTCGCTCAGTTGCAGGTGGACCCTAGCACCAGATCTTACGAATCTGCTCAAGGGGGAGGTGTTAGTGGGACATAGATTAGATTAAAGCATGTTTCATGCATGATGGTGTTGCTGCGCACTGATTGGCTAGTTCTAAACCGATCAGCACGGGCATATTATTGGAGAAAAATCTAGAAGCTTCTTATGTATATACTATAAATATATGAACGTTATTCAAACTAGTGATTGCTGTTCACATACCATTGTTATTTGTGAATACAATTTCATTCCTGTTCAACGTGTTCTGATTTTGGGGTCTTGTTGAGTGTCATCGTATAAGAATACTAAGCAATAGGAATAGCTGGGTCATTGATATAGCAAAACACAATTATAACAGGTTCTGTCTTCTGAAATCAAATCAATC]
[+] EMBL CD158136 [AGCATCTCAGTTCGCTCAGTTGCAGGTGGACCCTAGCACCAGATCTTACGAATCTGCTCAAGGGGGAGGTGTTAGTGGGACATAGATTAGATTAAAGCATGTTTCATGCATGATGGTGTTGCTGCGCACTGATTGGCTAGTTCTAAACCGATCAGCACGGGCATATTATTGGAGAAAAATCTAGAAGCTTCTTATGTATATACTATAAATATATGAACGTTATTCAAACTAGTGATTGCTGTTCACATACCATTGTTATTTGTGAATACAATTTCATTCCTGTTCAACGTGTTCTGATTTTGGGGTCTTGTTGAGTGTCATCGTATAAGAATACTAAGCAATAGGAATAGCTGGGTCATTGATATAGCAAAACACAATTATAACAGGTTCTGTCTTCTGAAATCAAATCAATC]
consensusID : consensus_8026#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence
[CCAGATTCCAGAAGAGGAAGAAATCAGGAGGAAGCGCTGGAAGTTACCGTAAACGAGAACGACCAGTAAAAAGCAAGGAAGGCAAGGTAATCACCAATATTGGAGAACAACGGAACAGGTGTAAGTAAGTAAGTAAGTAAATTTACTCTTTATAACAAAGTGTATAAAATAAAGGATCATCTATAAATGACCACCATTTTTATGCCCACATATTCAGAAACGCCGAATCCTCATAGTAATTAATATGCTTCGTCACCGGCTATAAAAATGTTTATTTCATCTACAGGTTTACTCATTCACTTTTAG]
[+] EMBL CD066300 [CCAGATTCCAGAAGAGGAAGAAATCAGGAGGAAGCGCTGGAAGTTACCGTAAACGAGAACGACCAGTAAAAAGCAAGGAAGGCAAGGTAATCACCAATATTGGAGAACAACGGAACAGGTGTAAGTAAGTAAGTAAGTAAATTTACTCTTTATAACAAAGTGTATAAAATAAAGGATCATCTATAAATGACCACCATTTTTATGCCCACATATTCAGAAACGCCGAATCCTCATAGTAATTAATATGCTTCGTCACCGGCTATAAAAATGTTTATTTCATCTACAGGTTTACTCATTCACTTTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8026#0 GTGCTGCTCACTTTAGCAGAACAAATCGGCACTCTAGTCCCATATGTAGGCGGTCCTGAG 60
consensus_8026#1 ------------------------------------------------------------
consensus_8026#2 ------------------------------------------------------------
consensus_8026#0 TATGCTCACTCACTTCTTCCTCCACTTGAGAGTCTTGCAGCAGCTGAAGAAACGGTTGTA 120
consensus_8026#1 ------------------------------------------------------------
consensus_8026#2 ------------------------------------------------------------
consensus_8026#0 CGTGATAGGGCTGTAGAGGCGCTTAGAAAACTTGCACCAGACCATACTACAGAAGCAATG 180
consensus_8026#1 ------------------------------------------------------------
consensus_8026#2 ------------------------------------------------------------
consensus_8026#0 GAAAAATATTTCAACCCATTGTTACATCGCCTAGCTACTGGTGATTGGTTTACAAGCCGA 240
consensus_8026#1 ------------------------------------------------------------
consensus_8026#2 ------------------------------------------------------------
consensus_8026#0 ACCTCTGCATGTGCGCTCTTTAGTGTGGTATATCCTAGAGTACGGAGCTCAAAACGATGG 300
consensus_8026#1 ------------------------------------------------------------
consensus_8026#2 ------------------------------------------------------------
consensus_8026#0 GAATTACTTGATTTTCTTAGAAGACTCGCCAAGGATGAAACGCCAATGGTCAGAAGAGCA 360
consensus_8026#1 ------------------------------------------------------------
consensus_8026#2 ------------------------------------------------------------
consensus_8026#0 GTTGCTGCCCGACTAGGTGAACCAGCACTAGCCATGTCAGTAGGTCAGTCTTCTGAAAAC 420
consensus_8026#1 ------------------------------------------------------------
consensus_8026#2 ------------------------------------------------------------
consensus_8026#0 CTAGTGCTGATGGAGAACATCAAGTCAGATATCTGAGCATAATTCAAGTAGTATGACCAA 480
consensus_8026#1 ------------------------------------------------------------
consensus_8026#2 ------------------------------------------------------------
consensus_8026#0 TTCATCACTGAATCGAAATGTTAACAAATGAAGTGGTTAGTTTGAACGGTGGTCAAGTTA 540
consensus_8026#1 ------------------------------------------------------------
consensus_8026#2 ------------------------------------------------------------
consensus_8026#0 GTTATGGAGTTACTGCTGACGAACGTTTGACCAATGATAGCATAGCCGAAAAACCATCGA 600
consensus_8026#1 ------------------------------------------------------------
consensus_8026#2 ------------------------------------------------------------
consensus_8026#0 CTCATGCAAACCCTCCTCAATCTGATGATTTCACTCTAGATCCTGAAAAAGAACGCAGTT 660
consensus_8026#1 ------------------------------------------------------------
consensus_8026#2 ------------------------------------------------------------
consensus_8026#0 ATATTATTACTATACTTGTTCCCTTATTTGTTCGACTAGTTGATGATGAACAAGAGTCTG 720
consensus_8026#1 ------------------------------------------------------------
consensus_8026#2 ------------------------------------------------------------
consensus_8026#0 TACGCCTTATGGCAGTTGAATCTATTGTCCAATTGGCACAAGCATTGGGACCTGAAGAAT 780
consensus_8026#1 ------------------------------------------------------------
consensus_8026#2 ------------------------------------------------------------
consensus_8026#0 CTGAAGGATATTTAATTGATCTCATCCAACAAGCTACGACTGATAGATCTTGGCGTGTTC 840
consensus_8026#1 ----AGCATCTCAGTTCGCTCAGTTGCAGGTGGACCCTAGCACCAGATCTTA------CG 50
consensus_8026#2 ------------------------------------------------------------
consensus_8026#0 GATGTGTTGTAGCCGATAAATTTACAGAGATTCAGACAGCTATGGGATTACGAGTTTCAC 900
consensus_8026#1 AATCTGCTCAAGGGGGAGGTGTTAGTGGGACATAGAT-----TAGATTAAAGCATGTTTC 105
consensus_8026#2 -------------------------------CCAGATTCCAGAAGAGGAAGAAATCAGGA 29
*** * * *
consensus_8026#0 GTGAACGATTGGTGCCTTTCTTCATGAAACTACTTCATGATGAAGAAGCTGAAGTACGAG 960
consensus_8026#1 ATGCATGAT-GGTGTTGCTGCGCACTGA-TTGGCTAGTTCTAAACCGATC--AGCACGGG 161
consensus_8026#2 GGAAGCGCTGGAAGTTACCGTAAACGAGAACGACCAGTAAAAAGCAAGGA-AGGCAAGGT 88
* * * * * * * * * *
consensus_8026#0 CAT-TTGCTGCTGGAAAAGTAAAGGCATTTGCCAAATGTCTACTAGGTTTACCAGTTGAT 1019
consensus_8026#1 CAT-ATTATTGGAGAAAAATCTAGAAGCTTCTTATGTATATACTA---TAAATATATGA- 216
consensus_8026#2 AATCACCAATATTGGAGAACAACGGAA-----CAGGTGTAAGTAAG--TAAGTAAGTAAA 141
** * * * * * * * * * * * * *
consensus_8026#0 GCCGATATTAATACTACTGATAAAACTATTAATTCTGATACAAAAGATTGTAAAAATTCT 1079
consensus_8026#1 -ACGTTATTCAAACTAGTGATTG--CTGTTCACA-TACCATTGTTATTTGTGAATACAAT 272
consensus_8026#2 TTTACTCTTTATAACAAAG-------TGTATAAAATAA-AGGATCATCTATAAATG-ACC 192
* ** * * * * * * * * * * * **
consensus_8026#0 TCTACAACAATAACATCAGATAATAAAATAATGGAAATTGATGAGAAATTCGAATCGGTC 1139
consensus_8026#1 TTCATTCCTGTT-CAACGTGTTCTGATTTTG-GGGTCTTGTTGAGTGTC----ATCGTAT 326
consensus_8026#2 ACCATTTTTATGCCCACATATTCAGAAACGCCGAATCCTCAT-AGTAATTAATAT-GCTT 250
* * * * * * * * * ** ** *
consensus_8026#0 AATGAT-CTCAACGATAATAATAGTTTAGGATCAAAAGATGATATAATCATGTTACAATT 1198
consensus_8026#1 AAGAATACTAAGCAATAGGAATAGCT--GGGTCAT----TGATATAG-CAAAACACAATT 379
consensus_8026#2 CGTCAC---CGGCTATAAAAATGTTT--ATTTCATCTACAGGTTTACTCAT-TCACTTTT 304
* * *** *** * *** * * ** ** ** **
consensus_8026#0 ATTACCAGCAATTAAAAGTCTTACAAATGAATCAAATACACATGTTAAATCTTCATTAGC 1258
consensus_8026#1 ATAACAGG---TTCTGTCTTCTGAAATCAAATCAATC----------------------- 413
consensus_8026#2 AG---------------------------------------------------------- 306
*
consensus_8026#0 TAGTGCTATACTTGGTTTAGCTCCATTAATTGGTAAAAATTTAACAATTGAACATTTATT 1318
consensus_8026#1 ------------------------------------------------------------
consensus_8026#2 ------------------------------------------------------------
consensus_8026#0 ACCTATATTTCTTACTCAATTAAATGATGATAATCCAGAAGTTCGATTAAATGTA 1373
consensus_8026#1 -------------------------------------------------------
consensus_8026#2 -------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||