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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1162 fasta sequence
[CGTCACGAGGCCCGATCAATAATCTTCAGGATGAGTTATCTCATTTGTCCAACTCTATGTGCATTTATCAATTACCTGCTGATATTGAGTTAGGTATGTAGGTTGTTAAATGCTTACTTTATTTAAAGGTATTCAATAACATCACCCGGCTTGGCTAAAAAGAGGCGAAAATAGCTCACTAATTGAACACCTTGTGAACACAGTTCAATCAATCAAGACAGAATCTGAATTCATGGTCATCTACAAGATAATTATGAGTCTGCCAAATGTATTTATATTGCATCTTCTTAGCATTGCCGAAGCAATAGCCATACATCAGGGAAAACTAGGATTGTGTGTCCAAAACCTCTTCTTCTACTATAGTCTAAATATCTCACTATTTTTTTCTTCATACTCTTCTTCCTTTGCAGCTGTCTGCTTTCCTTCTATCTTCCTTTATAGAACTTTTGCCTCCAAATGGTTTTTTCTTCTATTTCTATGATCCTCTTGATTATAGTTCATCTCAATTTCAACTTTTTATTTTGCCATTGTGAGTCTTCCTTTCCCAATTATAATTTCCCTATCTTTCTTCATGATGTATATTCAATCCCTCAATGGTAAAACTATTATTAGTTTCCCTGATAAAAATAACGTTGTAATACCTTTGTTTATTCTACCTCACTGTTACCATGTTCAACAGAATCCCTATTATTCACCGAAAAGAGAACTCTTCATCGCAATGGGTATATTCCGTTTATCTATCGTTTCATCAATAAACTTGTAGTGGAAACTCATAGAGATTAAGAAATCGCATGAATAAAACAACAACGAGAAAAACAATGACTTGATATATTTCATTTAACATTAGTACTGTAGTGAATGGGAACGTAAATGGAAACAATTGAATGTATTTGGATACAAAATTACGGAACCTGTAAGGACGGCTCGCCGTTAAACTCTAGGAAGCCTCAAGAAGCCTAGAAAGAGCCACAGACATTCCATTCAATCACTGCTAGGAGAATATTCTAGAATGTCGATGTATAGCTTCCCCATTGGATGAATAAGAAGGACTCCCTATGTGCCTAATGGTTGTCTGAAATGATGATTTACTCTCAGTCAAAAAACTATAAATACATGAGATTTCTGTACTATACTTTGACACCGTTTTGGGGAATAAAAGTTC]
[+] EMBL CD082235 [CGTCACGAGGCCCGATCAATAATCTTCAGGATGAGTTATCTCATTTGTCCAACTCTATGTGCATTTATCAATTACCTGCTGATATTGAGTTAGGTATGTAGGTTGTTAAATGCTTACTTTATTTAAAGGTATTCAATAACATCACCCGGCTTGGCTAAAAAGAGGCGAAAATAGCTCACTAATTGAACACCTTGTGAACACAGTTCAATCAATCAAGACAGAATCTGAATTCATGGTCATCTACAAGATAATTATGAGTCTGCCAAATGTATTTATATTGCATCTTCTTAGCATTGCCGAAGCAATAGCCATACATCAGGGAAAACTAGGATTGTGTGTCCAAAACCTCTTCTTCTACTATAGTCTAAATATCTCACTATTTTTTTCTTCATACTCTTCTTCCTTTGCAGCTGTCTGCTTTCCTTCTATCTTCCTTTATAGAACTTTTGCCTCCAAATGGTTTTTTCTTCTATTTCTATGATCCTCTTGATTATAGTTCATCTCAATTTCAACTTTTTATTTTGCCATTGTGAGTCTTCCTTTCCCAATTATAATTTCCCTATCTTTCTTCATGATGTATATTCAATCCCTCAATGGTAAAACTATTATTAGTTTCCCTGATAAAAATAACGTTGTAATACCTTTGTTTATTCTACCTCACTGTTACCATGTTCAACAGAATCCCTATTATTC ]
[-] EMBL CD075844 [ TCAATGGTAAAACTATANTTAGTTTCCCTGATAAAAATAACGTTGTAATACCTTTGTTTATTCTACCTCACTGTTACCATGTTCAACAGAATCCCTATTATTCACCGAAAAGAGAACTCTTCATCGCAATGGGTATATTCCGTTTATCTATCGTTTCATCAATAAACTTGTAGTGGAAACTCATAGAGATTAAGAAATCGCATGAATAAAACAACAACGAGAAAAACAATGACTTGATATATTTCATTTAACATTAGTACTGTAGTGAATGGGAACGTAAATGGAAACAATTGAATGTATTTGGATACAAAATTACGGAACCTGTAAGGACGGCTCGCCGTTAAACTCTAGGAAGCCTCAAGAAGCCTAGAAAGAGCCACAGACATTCCATTCAATCACTGCTAGGAGAATATTCTAGAATGTCGATGTATAGCTTCCCCATTGGATGAATAAGAAGGACTCCCTATGTGCCTAATGGTTGTCTGAAATGATGATTTACTCTCAGTCAAAAAACTATAAATACATGAGATTTCTGTACTATACTTTGACACCGTTTTGGGGAATAAAAGTTC]
consensusID : consensus_8030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence
[GTGGGTGCATAACATTCATTGTAATTCCCTCCTTCTTCGCTTTGAAAAATCCTTTGGCGATCGTGGATCCATGAGATTTAAATCCTAGTGCATACCGTGCTTTTTGGACAAAAAAGAAGAGGAACTCCTGGTGGGACAAATATTTCCTTCTGAGCGACCAAAGTCCAGCANCTTCTCTCCACCAAAAGGGGGGGGGNCCAGCTCGGGACCCATGAGCTTCACTGATTCCGAGAACCGTCAAGTTGTATCTCCTCATTTCCGTAGCTGTTTGATTGGTCCTTCCGGTCCCCCATATTGTGCGGACGTTCCATGTACCTATAAAAATTGTTGCTCTGGTTGTTAGAAGGGGCATCGGCTTCGTGACTTTCGTAGAATCTCGGCTTTCATCATGAAGAGTCATAATTCTT]
[+] EMBL CD179447 [GTGGGTGCATAACATTCATTGTAATTCCCTCCTTCTTCGCTTTGAAAAATCCTTTGGCGATCGTGGATCCATGAGATTTAAATCCTAGTGCATACCGTGCTTTTTGGACAAAAAAGAAGAGGAACTCCTGGTGGGACAAATATTTCCTTCTGAGCGACCAAAGTCCAGCANCTTCTCTCCACCAAAAGGGGGGGGGNCCAGCTCGGGACCCATGAGCTTCACTGATTCCGAGAACCGTCAAGTTGTATCTCCTCATTTCCGTAGCTGTTTGATTGGTCCTTCCGGTCCCCCATATTGTGCGGACGTTCCATGTACCTATAAAAATTGTTGCTCTGGTTGTTAGAAGGGGCATCGGCTTCGTGACTTTCGTAGAATCTCGGCTTTCATCATGAAGAGTCATAATTCTT]
consensusID : consensus_8030#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence
[CTCAGAGTGTTAATTTTCTGGTTAATTGCAATTTAGAATTGTGATATTACCACCAAATATGTTTTTCTGTTTTATACTATTCTAGAAAAATCCTGATTCACATTATCTACAAATGACTCCATTGCAAGCAGATATTTTAGTATCGAATAAAGTGAATTATACAGGAGAGGGACTATGAATTTATCAAATCATCAAATATGATTATATGATGAATCAAAGAATTTTTCAACTATATAGAAGCAAATGAATTTACAATTGTTCTATTTCACCTCTCAGGAAAATTCTGCAGTCCATATTGAACTATCGA]
[+] EMBL BG931735 [CTCAGAGTGTTAATTTTCTGGTTAATTGCAATTTAGAATTGTGATATTACCACCAAATATGTTTTTCTGTTTTATACTATTCTAGAAAAATCCTGATTCACATTATCTACAAATGACTCCATTGCAAGCAGATATTTTAGTATCGAATAAAGTGAATTATACAGGAGAGGGACTATGAATTTATCAAATCATCAAATATGATTATATGATGAATCAAAGAATTTTTCAACTATATAGAAGCAAATGAATTTACAATTGTTCTATTTCACCTCTCAGGAAAATTCTGCAGTCCATATTGAACTATCGA]
consensusID : consensus_8030#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence
[GCGGGATCGTGAATGCGCACTGCTAAGGAGTCCCATAATAGGGCGAAACAGCCGTCCAGTGCTTCCAGGTTTCCCATGGTAGTCTAGCTTCAATTGATTCATGATTTCAACTATGAAAATACTAAATTCTCCGCAAAACCCCCTTTGATCTACTATGAATTAGCTTGTTCGGTTAACTAACATTTTGATAAGGTTCCTCGGAGAGACTATAATTTATGGACGAGTCAATCAGAGGCGTCGAAGGGATTTCAAGGTCACAGCGCCAATTTCACTACCTGATGCTCATGTACAATCGGTCCACAGAG]
[+] EMBL CD090477 [GCGGGATCGTGAATGCGCACTGCTAAGGAGTCCCATAATAGGGCGAAACAGCCGTCCAGTGCTTCCAGGTTTCCCATGGTAGTCTAGCTTCAATTGATTCATGATTTCAACTATGAAAATACTAAATTCTCCGCAAAACCCCCTTTGATCTACTATGAATTAGCTTGTTCGGTTAACTAACATTTTGATAAGGTTCCTCGGAGAGACTATAATTTATGGACGAGTCAATCAGAGGCGTCGAAGGGATTTCAAGGTCACAGCGCCAATTTCACTACCTGATGCTCATGTACAATCGGTCCACAGAG]
consensusID : consensus_8030#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 179 fasta sequence
[GGGATCCAAAGGACGTGTTAGTGCTACGAGAATATCACGTAAAGTATCAAGTCCAACAGTTTTTGAGCAAAACTGTTCAAGTCGTTTATCTCTATCTTCACTGACTTAACAGGTTATATTACAGAGGGTCAAATTTATGTTGATCGTCAATTACATAACAGGCAGATCTATCCTCCAAT]
[+] EMBL CD062430 [GGGATCCAAAGGACGTGTTAGTGCTACGAGAATATCACGTAAAGTATCAAGTCCAACAGTTTTTGAGCAAAACTGTTCAAGTCGTTTATCTCTATCTTCACTGACTTAACAGGTTATATTACAGAGGGTCAAATTTATGTTGATCGTCAATTACATAACAGGCAGATCTATCCTCCAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8030#2 ------------------------------------------------------------
consensus_8030#3 ------------------------------------------------------------
consensus_8030#4 ------------------------------------------------------------
consensus_8030#0 CGTCACGAGGCCCGATCAATAATCTTCAGGATGAGTTATCTCATTTGTCCAACTCTATGT 60
consensus_8030#1 ------------------------------------------------------------
consensus_8030#2 ------------------------------------------------------------
consensus_8030#3 ------------------------------------------------------------
consensus_8030#4 ------------------------------------------------------------
consensus_8030#0 GCATTTATCAATTACCTGCTGATATTGAGTTAGGTATGTAGGTTGTTAAATGCTTACTTT 120
consensus_8030#1 ------------------------------------------------------------
consensus_8030#2 ------------------------------------------------------------
consensus_8030#3 ------------------------------------------------------------
consensus_8030#4 ------------------------------------------------------------
consensus_8030#0 ATTTAAAGGTATTCAATAACATCACCCGGCTTGGCTAAAAAGAGGCGAAAATAGCTCACT 180
consensus_8030#1 ------------------------------------------------------------
consensus_8030#2 ------------------------------------------------------------
consensus_8030#3 ------------------------------------------------------------
consensus_8030#4 ------------------------------------------------------------
consensus_8030#0 AATTGAACACCTTGTGAACACAGTTCAATCAATCAAGACAGAATCTGAATTCATGGTCAT 240
consensus_8030#1 ------------------------------------------------------------
consensus_8030#2 ------------------------------------------------------------
consensus_8030#3 ------------------------------------------------------------
consensus_8030#4 ------------------------------------------------------------
consensus_8030#0 CTACAAGATAATTATGAGTCTGCCAAATGTATTTATATTGCATCTTCTTAGCATTGCCGA 300
consensus_8030#1 ------------------------------------------------------------
consensus_8030#2 ------------------------------------------------------------
consensus_8030#3 ------------------------------------------------------------
consensus_8030#4 ------------------------------------------------------------
consensus_8030#0 AGCAATAGCCATACATCAGGGAAAACTAGGATTGTGTGTCCAAAACCTCTTCTTCTACTA 360
consensus_8030#1 ------------------------------------------------------------
consensus_8030#2 ------------------------------------------------------------
consensus_8030#3 ------------------------------------------------------------
consensus_8030#4 ------------------------------------------------------------
consensus_8030#0 TAGTCTAAATATCTCACTATTTTTTTCTTCATACTCTTCTTCCTTTGCAGCTGTCTGCTT 420
consensus_8030#1 ------------------------------------------------------------
consensus_8030#2 ------------------------------------------------------------
consensus_8030#3 ------------------------------------------------------------
consensus_8030#4 ------------------------------------------------------------
consensus_8030#0 TCCTTCTATCTTCCTTTATAGAACTTTTGCCTCCAAATGGTTTTTTCTTCTATTTCTATG 480
consensus_8030#1 ------------------------------------------------------------
consensus_8030#2 ------------------------------------------------------------
consensus_8030#3 ------------------------------------------------------------
consensus_8030#4 ------------------------------------------------------------
consensus_8030#0 ATCCTCTTGATTATAGTTCATCTCAATTTCAACTTTTTATTTTGCCATTGTGAGTCTTCC 540
consensus_8030#1 ------------------------------------------------------------
consensus_8030#2 ------------------------------------------------------------
consensus_8030#3 ------------------------------------------------------------
consensus_8030#4 ------------------------------------------------------------
consensus_8030#0 TTTCCCAATTATAATTTCCCTATCTTTCTTCATGATGTATATTCAATCCCTCAATGGTAA 600
consensus_8030#1 ------------------------------------------------------------
consensus_8030#2 ------------------------------------------------------------
consensus_8030#3 ------------------------------------------------------------
consensus_8030#4 ------------------------------------------------------------
consensus_8030#0 AACTATTATTAGTTTCCCTGATAAAAATAACGTTGTAATACCTTTGTTTATTCTACCTCA 660
consensus_8030#1 ------------------------------------------------------------
consensus_8030#2 ------------------------------------------------------------
consensus_8030#3 ------------------------------------------------------------
consensus_8030#4 ------------------------------------------------------------
consensus_8030#0 CTGTTACCATGTTCAACAGAATCCCTATTATTCACCGAAAAGAGAACTCTTCATCGCAAT 720
consensus_8030#1 --------------------GTGGGTGCATAACATTCATTGTAATTCCCTCCTTCTTCGC 40
consensus_8030#2 -----------------------------CTCAGAGTGTTAATTTTC-----TGGTTAAT 26
consensus_8030#3 -----------------------------GCGGGATCGTGAATGCGCA---CTGCTAAGG 28
consensus_8030#4 -------------------------GGGATCCAAAGGACGTGTTAGTG---CTACGAGAA 32
consensus_8030#0 GGGTATATTCCGTTTATCTATCGTTTCATCAATAAACTTGTAGTGGAA---ACTCATAGA 777
consensus_8030#1 TTTGAAAAATCCTTTGGCGATCGTGGATCCATGAGATTTAAATCCTAGTGCATACCGTGC 100
consensus_8030#2 TGCAATTTAGAATTGTGATATTACCACCAAATATGTTTTTCTGTTTTAT---ACTATTCT 83
consensus_8030#3 AGTCCCATAATAGGGCGAAACAGCCGTCCAGTGCTTCCAGGTTTCCCAT---GGTAGTCT 85
consensus_8030#4 TATCACGTAAAGTATCAAGTCCAACAGTTTTTGAGCAAAACTGTTCAA-----GTCGTTT 87
consensus_8030#0 GATTAAGAAATCGCATGAATAAAACAAC-AACGAGAAAAACAATGACTT---GATATATT 833
consensus_8030#1 TTTTTGGACAAAAAAGAAGAGGAACTCCTGGTGGGACAAATATTTCCTTCTGAGCGACCA 160
* * *
consensus_8030#2 AGAAAAATCCTGATTCACATTATCTAC----AAATGACTCCATTGCAAGC--AGA---TA 134
consensus_8030#3 AGCTTCAAT-TGATTCATGATTTCAACTATGAAAATACTAAATTCTCCGC--AAAACCCC 142
consensus_8030#4 ATCTCTATC----TTCACTGACTTAAC----AGGTTATATTACAGAGGGT--CAAATTTA 137
consensus_8030#0 TCATTTAACATTAGTACTGTAGTGAATG--GGAACGTAAATGGAAACAAT--TGAATGTA 889
consensus_8030#1 AAGTCCAGCANCTTCTCTCCACCAAAAGGGGGGGGGNCCAGCTCGGGACCCATGAGCTTC 220
* * *
consensus_8030#2 TTTTAGTATCGAATAAAGTGAATTATACAGGAGAGGGACTATGAATTTATCAAATCATCA 194
consensus_8030#3 CTTTGATCTACTATGAATTAGCTTGTTCGGTTAACTAACATT---TTGATAAGGTTCCTC 199
consensus_8030#4 TGTTGATCGTCAATTACATAACAGGCAGATCTATCCTCCAAT------------------ 179
consensus_8030#0 TTTGGATACAAAATTACGGAACCTGTAAGGACGGCTCGCCGTTAAACTCTAGGAAGCCTC 949
consensus_8030#1 ACTGATTCCGAGAACCGTCAAGTTGTATCTCCTCATTTCCGT-AGCTGTTTGATTGGTCC 279
* * * * *
consensus_8030#2 AATATGATTATAT-GATGAATCAAAGAATTTTTCAACTATATAGAA-GCAAATG-----A 247
consensus_8030#3 GGAGAGACTATA---ATTTATGGACGAGTCAATCAGAGGCGTCGAA-GGGATTT-----C 250
consensus_8030#4 ------------------------------------------------------------
consensus_8030#0 AAGAAGCCTAGAAAGAGCCACAGACATTCCATTCAATCACTGCTAG-GAGAATATTCTAG 1008
consensus_8030#1 TTCCGGTCCCCCATATTGTGCGGACGTTCCATGTACCTATAAAAATTGTTGCTCTGGTTG 339
consensus_8030#2 ATTTACAATTGTTCTATTTCACCTCTCAGGAAAATTCTGCAGTCCATATTGAACTATCGA 307
consensus_8030#3 AAGGTCACAGCGCCAATTTCACTACCTG-----ATGCTCATGTACA-ATCGGTCCACAGA 304
consensus_8030#4 ------------------------------------------------------------
consensus_8030#0 AATGTCGATGTATAGCTTCCCCATTGGATGAATAAGAAGGACTCCCTATGTGCCTAATGG 1068
consensus_8030#1 TTAGAAGGGGCATCGGCTTCGTGACTTTCGTAGAATCTCGGCTTTCATCATGAAGAGTCA 399
consensus_8030#2 ------------------------------------------------------------
consensus_8030#3 G----------------------------------------------------------- 305
consensus_8030#4 ------------------------------------------------------------
consensus_8030#0 TTGTCTGAAATGATGATTTACTCTCAGTCAAAAAACTATAAATACATGAGATTTCTGTAC 1128
consensus_8030#1 TAATTCTT---------------------------------------------------- 407
consensus_8030#2 ----------------------------------
consensus_8030#3 ----------------------------------
consensus_8030#4 ----------------------------------
consensus_8030#0 TATACTTTGACACCGTTTTGGGGAATAAAAGTTC 1162
consensus_8030#1 ----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||