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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1527 fasta sequence
[TGTCTTACGATNTAAAATGTCGTAGCCAATCAAAATAACTGGTTCATACATTTAATTCCAACCCATAAAAATTNTAAGGTTCAAGATCAATCCATGAGGAGTTGGAAATATACACACGACCTTCATTGATTAACCAGGATAGATATCAACGACCTTTGGACGACTTGTTAAGTCAGTTAAAGAACTACGGTATATTGCTTTGTGGAACTGACTTTAATCACTGAGCGCCGAATTCGAAACTGGTCCATATACGAATACTTAGATGAACAGCCAAGGCAACACAATAACGTATATATTGTGATCACTATCAGCAATTTTACCATTCATTTATTTCTTGATCAGTATTTTACCGTAGTATGCATGGTGAATCAGAAATAAAGACAAACGTGGAGCTTTCCAATAAATTAATTAGTTAGTAACTTAATATTTCACTTGCAGAATAAAAAGAAGAGTTAAACATTAGGAAGACCGAAGTCACTTCTACATTGTCAATGAAATACATTCATATTATGGCAAATTAAACCTATAGACGAAGTATATGCAACAAAATAAGTGTGATTACATGGATTACAATGCTGGGTATCTCAAAGTATACTCGAGTACTTATACAATTATTTTTCCACAACTATTTTTTCAGTTAATTTGCTCTTAATCATCTGTTACTTTCTTATTAAGAACCTCATCAAGTTTCTCATAGAATAGTTCTTCTGCAAACTGTTGCCAGTTTTCAATTGTCCAAATGCGATTTCCTCCGGATATGGTCTTGTGCAATTTTTGTAAACACTCTACTTTAATATCCGACGCCACTTTTGCATACTGAGTTCTCCACAAACAATCTTTAGATCTTATTGTGTGATTTGTGACTTTTCT-CAAGTGAATATCCACATTATGAAGTAAATTATCTAGATTAATAAGCTTGCTTCTGTTTTTCTCCTCATTTTTTACAGAATCTTCATTTCGAATCGGTTGGTTCAACAACAGTTTTAAAAAATTAAGCAAACTGACTGGACTATGTACATTCTCTTC-ACGGAACTGATTGTGATTGTATGCTTCTCCCATAAATTGTTAACTGGATCTGGCCACTCGAATTTTCTCTCCATCTAATGGATAGTATCATCTGGAACTGGACTTGGCCTGGAGCGATTTCTAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGTCATAACTACATGAGTACTTTCTTGCTAAATTATAGATTGAAAGACGCATACTACAGTAGTAGAGAGTTGTCGTATGATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACCAAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTAACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTGCTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAACCATCATTTGTTTCTAACTGATGCAGAC]
[-] EMBL CD078931 [TGTCTTACGATNTAAAATGTCGTAGCCAATCAAAATAACTGGTTCATACATTTAATTCCAACCCATAAAAATTNTAAGGTTCAAGATCAATCCATGAGGAGTTGGAAATATACACACGACCTTCATTGATTAACCAGGATAGATATCAACGACCTTTGGACGACTTGTTAAGTCAGTTAAAGAACTACGGTATATTGCTTTGTGGAACTGACTTTAATCACTGAGCGCCGAATTCGAAACTGGTCCATATACGAATACTTAGATGAACAGCCAAGGCAACACAATAACGTATATATTGTGATCACTATCAGCAATTTTACCATTCATTTATTTCTTGATCAGTATTTTACCGTAGTATGCATGGTGAATCAGAAATAAAGACAAACGTGGAGCTTTCCAATAAATTAATTAGTTAGTAACTTAATATTTCACTTGCAGAATAAAAAGAAGAGTTAAACATTAGGAAGACCGAAGTCACTTCTACATTGTCAATGAAATACATTCATATTATGGCAAATTAAACCTATAGACGAAGTATATGCAACAAAATAAGTGTGATTACATGGATTACAATGCTGGGTATCTCAAAGTATACTCGAGTACT ]
[+] EMBL CD187116 [ TTCGAAACTGGTCCATATACGAATACTTAGATGAACAGCCAAGGCAACACAATAACGTATATATTGTGATCACTATCAGCAATTTTACCATTCATTTATTTCTTGATCAGTATTTTGCCGTAGTATGCATGGTGAATCAGAAATAAAGACAAACGTGGAGCTTTCCAATAAATTAATTAGTTAGTAACTTAATATTTCACTTGCAGAATAAAAAGAAGAGTTAAACATTAGGAAGACCGAAGTCACTTCTACATTGTCAATGAAATACATTCATATTATGGCAAATTAAACCTATAGACGAAGTATATGCAACAAAATAAGTGTGATTACATGGATTACAATGCTGGGTATCTCAAAGTATACTCGAGTACTTATACAATTATTTTTCCACAACTATTTTTTCAGTTAATTTG ]
[+] EMBL CD074176 [ CAATAAATTAATTTTTTAGTAACTTAATATTTCACTTGCAGAATAAAAAGAAGAGTTAAACATTAGGAAGACCGAAGTCACTTCTACATTGTCAATGAAATACATTCATATTATGGCAAATTAAACCTATAGACGAAGTATATGCAACAAAATAAGTGTGATTACATGGATTACAATGCTGGGTATCTCAAAGTATACTCGAGTACTTATACAATTATTTTTCCACAACTATTTTTTCAGTTAATTTGCTCTTAATCATCTGTTACTTTCTTATTAAGAACCTCATCAAGTTTCTCATAGAATAGTTCTTCTGCAAACTGTTGCCAGTTTTCAATTGTCCAAATGCGATTTCCTCCGGATATGGTCTTGTGCAATTTTTGTAAACACTCTACTTTAATATCCGACGCCACTTTTGCATACTGAGTTCTCCACAAACAATCTTTAGATCTTATTGTGTGATTTGTGACTTTTCT CAAGTGAATATCCACATTATGAAGTAAATTATCTAGATTAATAAGCTTGCTTCTGTTTTTCTCCTCATTTTTTACAGAATCTTCATTTCGAATCGGTTGGTTCAACAACAGTTTTAAAAAATTAAGCAAACTGACTGGACTATGTACATTCTCTTC ACGGAACTG ]
[-] EMBL CD080258 [ CCACTTTTGCATACTGAGTTCTCCACAAACAATCTTTAGATCTTATTGTGTGATTTGTGACTTTTCTACAAGTGAATATCCACATTATGAAGTAAATTATCTAGATTAATAAGCTTGCTTCTGTTTTTCTCCTCATTTTTTACAGAATCTTCATTTCGAATCGGTTGGTTCAACAACAGTTTTAAAAAATTAAGCAAACTGACTGGACTATGTACATTCTCTTCAACGGAACTGATTGTGATTGTATGCTTCTCCCATAAATTGTTAACTGGATCTGGCCACTCGAATTTTCTCTCCATCTAATGGATAGTATCATCTGGAACTGGACTTGGCCTGGAGCGATTTCTAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGTCATAACTACATGAGTACTTTCTTGCTAAATTATAGATTGAAAGACGCATACTACAGTAGTAGAGAGTTGTCGTATG ]
[+] EMBL CD147833 [ TCTCTCCATCTTATGGATAGTATCATCTGGAACTGGACTTGGCCTGGAGCGATTTCTAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACG CATAACTACATGAGCACTTTCTTGCTAAATTATAGATTGAACGACGCATACTACAGTAGTAGA AGTTGTCGTCTAATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACCAAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTAACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTGCTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAACCATCATTTGTTTCTAACTGATGCAGAC]
consensusID : consensus_8032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence
[TAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGCATAAACTTTCTTGCTAAATTATAGATTGAACGACGCATACTACAGTAGTAGAAGTTGTCGTCTAATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACCAAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTAACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTGCTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAACAATCATTTGTTTCTAACTGATGCAGACGTTCACATAATGTACTTTTCCCACTTCCTGGAAGACCTAAGACAGTCGTTAGTACCACTTGTTTCATAAGCAAAAACAAGGGCCACGAAGAACAAAGCTTCGAACTTAAGCTTAATGTGCAATGAACATTGTCCTTCAAACTA]
[+] EMBL CD132772 [TAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGCATAAACTTTCTTGCTAAATTATAGATTGAACGACGCATACTACAGTAGTAGAAGTTGTCGTCTAATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACCAAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTAACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTGCTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAACAATCATTTGTTTCTAACTGATGCAGACGTTCACATAATGTACTTTTCCCACTTCCTGGAAGACCTAAGACAGTCGTTAGTACCACTTGTTTCATAAGCAAAAACAAGGGCCACGAAGAACAAAGCTTCGAACTTAAGCTTAATGTGCAATGAACATTGTCCTTCAAACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8032#0 TGTCTTACGATNTAAAATGTCGTAGCCAATCAAAATAACTGGTTCATACATTTAATTCCA 60
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 ACCCATAAAAATTNTAAGGTTCAAGATCAATCCATGAGGAGTTGGAAATATACACACGAC 120
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 CTTCATTGATTAACCAGGATAGATATCAACGACCTTTGGACGACTTGTTAAGTCAGTTAA 180
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 AGAACTACGGTATATTGCTTTGTGGAACTGACTTTAATCACTGAGCGCCGAATTCGAAAC 240
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 TGGTCCATATACGAATACTTAGATGAACAGCCAAGGCAACACAATAACGTATATATTGTG 300
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 ATCACTATCAGCAATTTTACCATTCATTTATTTCTTGATCAGTATTTTACCGTAGTATGC 360
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 ATGGTGAATCAGAAATAAAGACAAACGTGGAGCTTTCCAATAAATTAATTAGTTAGTAAC 420
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 TTAATATTTCACTTGCAGAATAAAAAGAAGAGTTAAACATTAGGAAGACCGAAGTCACTT 480
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 CTACATTGTCAATGAAATACATTCATATTATGGCAAATTAAACCTATAGACGAAGTATAT 540
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 GCAACAAAATAAGTGTGATTACATGGATTACAATGCTGGGTATCTCAAAGTATACTCGAG 600
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 TACTTATACAATTATTTTTCCACAACTATTTTTTCAGTTAATTTGCTCTTAATCATCTGT 660
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 TACTTTCTTATTAAGAACCTCATCAAGTTTCTCATAGAATAGTTCTTCTGCAAACTGTTG 720
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 CCAGTTTTCAATTGTCCAAATGCGATTTCCTCCGGATATGGTCTTGTGCAATTTTTGTAA 780
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 ACACTCTACTTTAATATCCGACGCCACTTTTGCATACTGAGTTCTCCACAAACAATCTTT 840
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 AGATCTTATTGTGTGATTTGTGACTTTTCTCAAGTGAATATCCACATTATGAAGTAAATT 900
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 ATCTAGATTAATAAGCTTGCTTCTGTTTTTCTCCTCATTTTTTACAGAATCTTCATTTCG 960
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 AATCGGTTGGTTCAACAACAGTTTTAAAAAATTAAGCAAACTGACTGGACTATGTACATT 1020
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 CTCTTCACGGAACTGATTGTGATTGTATGCTTCTCCCATAAATTGTTAACTGGATCTGGC 1080
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 CACTCGAATTTTCTCTCCATCTAATGGATAGTATCATCTGGAACTGGACTTGGCCTGGAG 1140
consensus_8032#1 ------------------------------------------------------------
consensus_8032#0 CGATTTCTAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGTCATAACTACA 1200
consensus_8032#1 -------TAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACG-CATAA----- 47
****************************************** *****
consensus_8032#0 TGAGTACTTTCTTGCTAAATTATAGATTGAAAGACGCATACTACAGTAGTAGAGAGTTGT 1260
consensus_8032#1 -----ACTTTCTTGCTAAATTATAGATTGAACGACGCATACTACAGTAGTAGA-AGTTGT 101
************************** ********************* ******
consensus_8032#0 CGTATGATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACC 1320
consensus_8032#1 CGTCTAATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACC 161
*** * ******************************************************
consensus_8032#0 AAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTA 1380
consensus_8032#1 AAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTA 221
************************************************************
consensus_8032#0 ACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTG 1440
consensus_8032#1 ACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTG 281
************************************************************
consensus_8032#0 CTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAAC 1500
consensus_8032#1 CTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAAC 341
************************************************************
consensus_8032#0 CATCATTTGTTTCTAACTGATGCAGAC--------------------------------- 1527
consensus_8032#1 AATCATTTGTTTCTAACTGATGCAGACGTTCACATAATGTACTTTTCCCACTTCCTGGAA 401
**************************
consensus_8032#0 ------------------------------------------------------------
consensus_8032#1 GACCTAAGACAGTCGTTAGTACCACTTGTTTCATAAGCAAAAACAAGGGCCACGAAGAAC 461
consensus_8032#0 --------------------------------------------------
consensus_8032#1 AAAGCTTCGAACTTAAGCTTAATGTGCAATGAACATTGTCCTTCAAACTA 511
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||