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Schistosoma mansoni
cluster # 8032 cluster # 8032       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8032#0 length = 1527 sequences # 5  
consensus_8032#1 length = 511 sequences # 1  

consensusID : consensus_8032#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1527
fasta sequence
                              [TGTCTTACGATNTAAAATGTCGTAGCCAATCAAAATAACTGGTTCATACATTTAATTCCAACCCATAAAAATTNTAAGGTTCAAGATCAATCCATGAGGAGTTGGAAATATACACACGACCTTCATTGATTAACCAGGATAGATATCAACGACCTTTGGACGACTTGTTAAGTCAGTTAAAGAACTACGGTATATTGCTTTGTGGAACTGACTTTAATCACTGAGCGCCGAATTCGAAACTGGTCCATATACGAATACTTAGATGAACAGCCAAGGCAACACAATAACGTATATATTGTGATCACTATCAGCAATTTTACCATTCATTTATTTCTTGATCAGTATTTTACCGTAGTATGCATGGTGAATCAGAAATAAAGACAAACGTGGAGCTTTCCAATAAATTAATTAGTTAGTAACTTAATATTTCACTTGCAGAATAAAAAGAAGAGTTAAACATTAGGAAGACCGAAGTCACTTCTACATTGTCAATGAAATACATTCATATTATGGCAAATTAAACCTATAGACGAAGTATATGCAACAAAATAAGTGTGATTACATGGATTACAATGCTGGGTATCTCAAAGTATACTCGAGTACTTATACAATTATTTTTCCACAACTATTTTTTCAGTTAATTTGCTCTTAATCATCTGTTACTTTCTTATTAAGAACCTCATCAAGTTTCTCATAGAATAGTTCTTCTGCAAACTGTTGCCAGTTTTCAATTGTCCAAATGCGATTTCCTCCGGATATGGTCTTGTGCAATTTTTGTAAACACTCTACTTTAATATCCGACGCCACTTTTGCATACTGAGTTCTCCACAAACAATCTTTAGATCTTATTGTGTGATTTGTGACTTTTCT-CAAGTGAATATCCACATTATGAAGTAAATTATCTAGATTAATAAGCTTGCTTCTGTTTTTCTCCTCATTTTTTACAGAATCTTCATTTCGAATCGGTTGGTTCAACAACAGTTTTAAAAAATTAAGCAAACTGACTGGACTATGTACATTCTCTTC-ACGGAACTGATTGTGATTGTATGCTTCTCCCATAAATTGTTAACTGGATCTGGCCACTCGAATTTTCTCTCCATCTAATGGATAGTATCATCTGGAACTGGACTTGGCCTGGAGCGATTTCTAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGTCATAACTACATGAGTACTTTCTTGCTAAATTATAGATTGAAAGACGCATACTACAGTAGTAGAGAGTTGTCGTATGATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACCAAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTAACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTGCTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAACCATCATTTGTTTCTAACTGATGCAGAC]

[-] EMBL CD078931             [TGTCTTACGATNTAAAATGTCGTAGCCAATCAAAATAACTGGTTCATACATTTAATTCCAACCCATAAAAATTNTAAGGTTCAAGATCAATCCATGAGGAGTTGGAAATATACACACGACCTTCATTGATTAACCAGGATAGATATCAACGACCTTTGGACGACTTGTTAAGTCAGTTAAAGAACTACGGTATATTGCTTTGTGGAACTGACTTTAATCACTGAGCGCCGAATTCGAAACTGGTCCATATACGAATACTTAGATGAACAGCCAAGGCAACACAATAACGTATATATTGTGATCACTATCAGCAATTTTACCATTCATTTATTTCTTGATCAGTATTTTACCGTAGTATGCATGGTGAATCAGAAATAAAGACAAACGTGGAGCTTTCCAATAAATTAATTAGTTAGTAACTTAATATTTCACTTGCAGAATAAAAAGAAGAGTTAAACATTAGGAAGACCGAAGTCACTTCTACATTGTCAATGAAATACATTCATATTATGGCAAATTAAACCTATAGACGAAGTATATGCAACAAAATAAGTGTGATTACATGGATTACAATGCTGGGTATCTCAAAGTATACTCGAGTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD187116             [                                                                                                                                                                                                                                        TTCGAAACTGGTCCATATACGAATACTTAGATGAACAGCCAAGGCAACACAATAACGTATATATTGTGATCACTATCAGCAATTTTACCATTCATTTATTTCTTGATCAGTATTTTGCCGTAGTATGCATGGTGAATCAGAAATAAAGACAAACGTGGAGCTTTCCAATAAATTAATTAGTTAGTAACTTAATATTTCACTTGCAGAATAAAAAGAAGAGTTAAACATTAGGAAGACCGAAGTCACTTCTACATTGTCAATGAAATACATTCATATTATGGCAAATTAAACCTATAGACGAAGTATATGCAACAAAATAAGTGTGATTACATGGATTACAATGCTGGGTATCTCAAAGTATACTCGAGTACTTATACAATTATTTTTCCACAACTATTTTTTCAGTTAATTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD074176             [                                                                                                                                                                                                                                                                                                                                                                                                             CAATAAATTAATTTTTTAGTAACTTAATATTTCACTTGCAGAATAAAAAGAAGAGTTAAACATTAGGAAGACCGAAGTCACTTCTACATTGTCAATGAAATACATTCATATTATGGCAAATTAAACCTATAGACGAAGTATATGCAACAAAATAAGTGTGATTACATGGATTACAATGCTGGGTATCTCAAAGTATACTCGAGTACTTATACAATTATTTTTCCACAACTATTTTTTCAGTTAATTTGCTCTTAATCATCTGTTACTTTCTTATTAAGAACCTCATCAAGTTTCTCATAGAATAGTTCTTCTGCAAACTGTTGCCAGTTTTCAATTGTCCAAATGCGATTTCCTCCGGATATGGTCTTGTGCAATTTTTGTAAACACTCTACTTTAATATCCGACGCCACTTTTGCATACTGAGTTCTCCACAAACAATCTTTAGATCTTATTGTGTGATTTGTGACTTTTCT CAAGTGAATATCCACATTATGAAGTAAATTATCTAGATTAATAAGCTTGCTTCTGTTTTTCTCCTCATTTTTTACAGAATCTTCATTTCGAATCGGTTGGTTCAACAACAGTTTTAAAAAATTAAGCAAACTGACTGGACTATGTACATTCTCTTC ACGGAACTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD080258             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCACTTTTGCATACTGAGTTCTCCACAAACAATCTTTAGATCTTATTGTGTGATTTGTGACTTTTCTACAAGTGAATATCCACATTATGAAGTAAATTATCTAGATTAATAAGCTTGCTTCTGTTTTTCTCCTCATTTTTTACAGAATCTTCATTTCGAATCGGTTGGTTCAACAACAGTTTTAAAAAATTAAGCAAACTGACTGGACTATGTACATTCTCTTCAACGGAACTGATTGTGATTGTATGCTTCTCCCATAAATTGTTAACTGGATCTGGCCACTCGAATTTTCTCTCCATCTAATGGATAGTATCATCTGGAACTGGACTTGGCCTGGAGCGATTTCTAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGTCATAACTACATGAGTACTTTCTTGCTAAATTATAGATTGAAAGACGCATACTACAGTAGTAGAGAGTTGTCGTATG                                                                                                                                                                                                                                                                     ]
[+] EMBL CD147833             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TCTCTCCATCTTATGGATAGTATCATCTGGAACTGGACTTGGCCTGGAGCGATTTCTAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACG CATAACTACATGAGCACTTTCTTGCTAAATTATAGATTGAACGACGCATACTACAGTAGTAGA AGTTGTCGTCTAATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACCAAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTAACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTGCTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAACCATCATTTGTTTCTAACTGATGCAGAC]


>consensus_8032#0 TGTCTTACGATNTAAAATGTCGTAGCCAATCAAAATAACTGGTTCATACATTTAATTCCA ACCCATAAAAATTNTAAGGTTCAAGATCAATCCATGAGGAGTTGGAAATATACACACGAC CTTCATTGATTAACCAGGATAGATATCAACGACCTTTGGACGACTTGTTAAGTCAGTTAA AGAACTACGGTATATTGCTTTGTGGAACTGACTTTAATCACTGAGCGCCGAATTCGAAAC TGGTCCATATACGAATACTTAGATGAACAGCCAAGGCAACACAATAACGTATATATTGTG ATCACTATCAGCAATTTTACCATTCATTTATTTCTTGATCAGTATTTTACCGTAGTATGC ATGGTGAATCAGAAATAAAGACAAACGTGGAGCTTTCCAATAAATTAATTAGTTAGTAAC TTAATATTTCACTTGCAGAATAAAAAGAAGAGTTAAACATTAGGAAGACCGAAGTCACTT CTACATTGTCAATGAAATACATTCATATTATGGCAAATTAAACCTATAGACGAAGTATAT GCAACAAAATAAGTGTGATTACATGGATTACAATGCTGGGTATCTCAAAGTATACTCGAG TACTTATACAATTATTTTTCCACAACTATTTTTTCAGTTAATTTGCTCTTAATCATCTGT TACTTTCTTATTAAGAACCTCATCAAGTTTCTCATAGAATAGTTCTTCTGCAAACTGTTG CCAGTTTTCAATTGTCCAAATGCGATTTCCTCCGGATATGGTCTTGTGCAATTTTTGTAA ACACTCTACTTTAATATCCGACGCCACTTTTGCATACTGAGTTCTCCACAAACAATCTTT AGATCTTATTGTGTGATTTGTGACTTTTCTCAAGTGAATATCCACATTATGAAGTAAATT ATCTAGATTAATAAGCTTGCTTCTGTTTTTCTCCTCATTTTTTACAGAATCTTCATTTCG AATCGGTTGGTTCAACAACAGTTTTAAAAAATTAAGCAAACTGACTGGACTATGTACATT CTCTTCACGGAACTGATTGTGATTGTATGCTTCTCCCATAAATTGTTAACTGGATCTGGC CACTCGAATTTTCTCTCCATCTAATGGATAGTATCATCTGGAACTGGACTTGGCCTGGAG CGATTTCTAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGTCATAACTACA TGAGTACTTTCTTGCTAAATTATAGATTGAAAGACGCATACTACAGTAGTAGAGAGTTGT CGTATGATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACC AAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTA ACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTG CTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAAC CATCATTTGTTTCTAACTGATGCAGAC



consensusID : consensus_8032#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence
                              [TAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGCATAAACTTTCTTGCTAAATTATAGATTGAACGACGCATACTACAGTAGTAGAAGTTGTCGTCTAATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACCAAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTAACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTGCTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAACAATCATTTGTTTCTAACTGATGCAGACGTTCACATAATGTACTTTTCCCACTTCCTGGAAGACCTAAGACAGTCGTTAGTACCACTTGTTTCATAAGCAAAAACAAGGGCCACGAAGAACAAAGCTTCGAACTTAAGCTTAATGTGCAATGAACATTGTCCTTCAAACTA]

[+] EMBL CD132772             [TAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGCATAAACTTTCTTGCTAAATTATAGATTGAACGACGCATACTACAGTAGTAGAAGTTGTCGTCTAATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACCAAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTAACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTGCTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAACAATCATTTGTTTCTAACTGATGCAGACGTTCACATAATGTACTTTTCCCACTTCCTGGAAGACCTAAGACAGTCGTTAGTACCACTTGTTTCATAAGCAAAAACAAGGGCCACGAAGAACAAAGCTTCGAACTTAAGCTTAATGTGCAATGAACATTGTCCTTCAAACTA]


>consensus_8032#1 TAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGCATAAACTTTCTTGCTAA ATTATAGATTGAACGACGCATACTACAGTAGTAGAAGTTGTCGTCTAATAAAACTATGAC ATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACCAAATAACTTGTTCCTTTTC ATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTAACAGTTTCTCCAAACAACC AACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTGCTTTCAGAGAAAGCATTTG TGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAACAATCATTTGTTTCTAACTG ATGCAGACGTTCACATAATGTACTTTTCCCACTTCCTGGAAGACCTAAGACAGTCGTTAG TACCACTTGTTTCATAAGCAAAAACAAGGGCCACGAAGAACAAAGCTTCGAACTTAAGCT TAATGTGCAATGAACATTGTCCTTCAAACTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8032#0      TGTCTTACGATNTAAAATGTCGTAGCCAATCAAAATAACTGGTTCATACATTTAATTCCA 60
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      ACCCATAAAAATTNTAAGGTTCAAGATCAATCCATGAGGAGTTGGAAATATACACACGAC 120
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      CTTCATTGATTAACCAGGATAGATATCAACGACCTTTGGACGACTTGTTAAGTCAGTTAA 180
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      AGAACTACGGTATATTGCTTTGTGGAACTGACTTTAATCACTGAGCGCCGAATTCGAAAC 240
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      TGGTCCATATACGAATACTTAGATGAACAGCCAAGGCAACACAATAACGTATATATTGTG 300
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      ATCACTATCAGCAATTTTACCATTCATTTATTTCTTGATCAGTATTTTACCGTAGTATGC 360
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      ATGGTGAATCAGAAATAAAGACAAACGTGGAGCTTTCCAATAAATTAATTAGTTAGTAAC 420
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      TTAATATTTCACTTGCAGAATAAAAAGAAGAGTTAAACATTAGGAAGACCGAAGTCACTT 480
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      CTACATTGTCAATGAAATACATTCATATTATGGCAAATTAAACCTATAGACGAAGTATAT 540
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      GCAACAAAATAAGTGTGATTACATGGATTACAATGCTGGGTATCTCAAAGTATACTCGAG 600
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      TACTTATACAATTATTTTTCCACAACTATTTTTTCAGTTAATTTGCTCTTAATCATCTGT 660
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      TACTTTCTTATTAAGAACCTCATCAAGTTTCTCATAGAATAGTTCTTCTGCAAACTGTTG 720
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      CCAGTTTTCAATTGTCCAAATGCGATTTCCTCCGGATATGGTCTTGTGCAATTTTTGTAA 780
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      ACACTCTACTTTAATATCCGACGCCACTTTTGCATACTGAGTTCTCCACAAACAATCTTT 840
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      AGATCTTATTGTGTGATTTGTGACTTTTCTCAAGTGAATATCCACATTATGAAGTAAATT 900
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      ATCTAGATTAATAAGCTTGCTTCTGTTTTTCTCCTCATTTTTTACAGAATCTTCATTTCG 960
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      AATCGGTTGGTTCAACAACAGTTTTAAAAAATTAAGCAAACTGACTGGACTATGTACATT 1020
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      CTCTTCACGGAACTGATTGTGATTGTATGCTTCTCCCATAAATTGTTAACTGGATCTGGC 1080
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      CACTCGAATTTTCTCTCCATCTAATGGATAGTATCATCTGGAACTGGACTTGGCCTGGAG 1140
consensus_8032#1      ------------------------------------------------------------
                                                                                  

consensus_8032#0      CGATTTCTAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGTCATAACTACA 1200
consensus_8032#1      -------TAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACG-CATAA----- 47
                             ****************************************** *****     

consensus_8032#0      TGAGTACTTTCTTGCTAAATTATAGATTGAAAGACGCATACTACAGTAGTAGAGAGTTGT 1260
consensus_8032#1      -----ACTTTCTTGCTAAATTATAGATTGAACGACGCATACTACAGTAGTAGA-AGTTGT 101
                           ************************** ********************* ******

consensus_8032#0      CGTATGATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACC 1320
consensus_8032#1      CGTCTAATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACC 161
                      *** * ******************************************************

consensus_8032#0      AAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTA 1380
consensus_8032#1      AAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTA 221
                      ************************************************************

consensus_8032#0      ACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTG 1440
consensus_8032#1      ACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTG 281
                      ************************************************************

consensus_8032#0      CTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAAC 1500
consensus_8032#1      CTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAAC 341
                      ************************************************************

consensus_8032#0      CATCATTTGTTTCTAACTGATGCAGAC--------------------------------- 1527
consensus_8032#1      AATCATTTGTTTCTAACTGATGCAGACGTTCACATAATGTACTTTTCCCACTTCCTGGAA 401
                       **************************                                 

consensus_8032#0      ------------------------------------------------------------
consensus_8032#1      GACCTAAGACAGTCGTTAGTACCACTTGTTTCATAAGCAAAAACAAGGGCCACGAAGAAC 461
                                                                                  

consensus_8032#0      --------------------------------------------------
consensus_8032#1      AAAGCTTCGAACTTAAGCTTAATGTGCAATGAACATTGTCCTTCAAACTA 511
                                                                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)