These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1527 fasta sequence [TGTCTTACGATNTAAAATGTCGTAGCCAATCAAAATAACTGGTTCATACATTTAATTCCAACCCATAAAAATTNTAAGGTTCAAGATCAATCCATGAGGAGTTGGAAATATACACACGACCTTCATTGATTAACCAGGATAGATATCAACGACCTTTGGACGACTTGTTAAGTCAGTTAAAGAACTACGGTATATTGCTTTGTGGAACTGACTTTAATCACTGAGCGCCGAATTCGAAACTGGTCCATATACGAATACTTAGATGAACAGCCAAGGCAACACAATAACGTATATATTGTGATCACTATCAGCAATTTTACCATTCATTTATTTCTTGATCAGTATTTTACCGTAGTATGCATGGTGAATCAGAAATAAAGACAAACGTGGAGCTTTCCAATAAATTAATTAGTTAGTAACTTAATATTTCACTTGCAGAATAAAAAGAAGAGTTAAACATTAGGAAGACCGAAGTCACTTCTACATTGTCAATGAAATACATTCATATTATGGCAAATTAAACCTATAGACGAAGTATATGCAACAAAATAAGTGTGATTACATGGATTACAATGCTGGGTATCTCAAAGTATACTCGAGTACTTATACAATTATTTTTCCACAACTATTTTTTCAGTTAATTTGCTCTTAATCATCTGTTACTTTCTTATTAAGAACCTCATCAAGTTTCTCATAGAATAGTTCTTCTGCAAACTGTTGCCAGTTTTCAATTGTCCAAATGCGATTTCCTCCGGATATGGTCTTGTGCAATTTTTGTAAACACTCTACTTTAATATCCGACGCCACTTTTGCATACTGAGTTCTCCACAAACAATCTTTAGATCTTATTGTGTGATTTGTGACTTTTCT-CAAGTGAATATCCACATTATGAAGTAAATTATCTAGATTAATAAGCTTGCTTCTGTTTTTCTCCTCATTTTTTACAGAATCTTCATTTCGAATCGGTTGGTTCAACAACAGTTTTAAAAAATTAAGCAAACTGACTGGACTATGTACATTCTCTTC-ACGGAACTGATTGTGATTGTATGCTTCTCCCATAAATTGTTAACTGGATCTGGCCACTCGAATTTTCTCTCCATCTAATGGATAGTATCATCTGGAACTGGACTTGGCCTGGAGCGATTTCTAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGTCATAACTACATGAGTACTTTCTTGCTAAATTATAGATTGAAAGACGCATACTACAGTAGTAGAGAGTTGTCGTATGATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACCAAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTAACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTGCTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAACCATCATTTGTTTCTAACTGATGCAGAC] [-] EMBL CD078931 [TGTCTTACGATNTAAAATGTCGTAGCCAATCAAAATAACTGGTTCATACATTTAATTCCAACCCATAAAAATTNTAAGGTTCAAGATCAATCCATGAGGAGTTGGAAATATACACACGACCTTCATTGATTAACCAGGATAGATATCAACGACCTTTGGACGACTTGTTAAGTCAGTTAAAGAACTACGGTATATTGCTTTGTGGAACTGACTTTAATCACTGAGCGCCGAATTCGAAACTGGTCCATATACGAATACTTAGATGAACAGCCAAGGCAACACAATAACGTATATATTGTGATCACTATCAGCAATTTTACCATTCATTTATTTCTTGATCAGTATTTTACCGTAGTATGCATGGTGAATCAGAAATAAAGACAAACGTGGAGCTTTCCAATAAATTAATTAGTTAGTAACTTAATATTTCACTTGCAGAATAAAAAGAAGAGTTAAACATTAGGAAGACCGAAGTCACTTCTACATTGTCAATGAAATACATTCATATTATGGCAAATTAAACCTATAGACGAAGTATATGCAACAAAATAAGTGTGATTACATGGATTACAATGCTGGGTATCTCAAAGTATACTCGAGTACT ] [+] EMBL CD187116 [ TTCGAAACTGGTCCATATACGAATACTTAGATGAACAGCCAAGGCAACACAATAACGTATATATTGTGATCACTATCAGCAATTTTACCATTCATTTATTTCTTGATCAGTATTTTGCCGTAGTATGCATGGTGAATCAGAAATAAAGACAAACGTGGAGCTTTCCAATAAATTAATTAGTTAGTAACTTAATATTTCACTTGCAGAATAAAAAGAAGAGTTAAACATTAGGAAGACCGAAGTCACTTCTACATTGTCAATGAAATACATTCATATTATGGCAAATTAAACCTATAGACGAAGTATATGCAACAAAATAAGTGTGATTACATGGATTACAATGCTGGGTATCTCAAAGTATACTCGAGTACTTATACAATTATTTTTCCACAACTATTTTTTCAGTTAATTTG ] [+] EMBL CD074176 [ CAATAAATTAATTTTTTAGTAACTTAATATTTCACTTGCAGAATAAAAAGAAGAGTTAAACATTAGGAAGACCGAAGTCACTTCTACATTGTCAATGAAATACATTCATATTATGGCAAATTAAACCTATAGACGAAGTATATGCAACAAAATAAGTGTGATTACATGGATTACAATGCTGGGTATCTCAAAGTATACTCGAGTACTTATACAATTATTTTTCCACAACTATTTTTTCAGTTAATTTGCTCTTAATCATCTGTTACTTTCTTATTAAGAACCTCATCAAGTTTCTCATAGAATAGTTCTTCTGCAAACTGTTGCCAGTTTTCAATTGTCCAAATGCGATTTCCTCCGGATATGGTCTTGTGCAATTTTTGTAAACACTCTACTTTAATATCCGACGCCACTTTTGCATACTGAGTTCTCCACAAACAATCTTTAGATCTTATTGTGTGATTTGTGACTTTTCT CAAGTGAATATCCACATTATGAAGTAAATTATCTAGATTAATAAGCTTGCTTCTGTTTTTCTCCTCATTTTTTACAGAATCTTCATTTCGAATCGGTTGGTTCAACAACAGTTTTAAAAAATTAAGCAAACTGACTGGACTATGTACATTCTCTTC ACGGAACTG ] [-] EMBL CD080258 [ CCACTTTTGCATACTGAGTTCTCCACAAACAATCTTTAGATCTTATTGTGTGATTTGTGACTTTTCTACAAGTGAATATCCACATTATGAAGTAAATTATCTAGATTAATAAGCTTGCTTCTGTTTTTCTCCTCATTTTTTACAGAATCTTCATTTCGAATCGGTTGGTTCAACAACAGTTTTAAAAAATTAAGCAAACTGACTGGACTATGTACATTCTCTTCAACGGAACTGATTGTGATTGTATGCTTCTCCCATAAATTGTTAACTGGATCTGGCCACTCGAATTTTCTCTCCATCTAATGGATAGTATCATCTGGAACTGGACTTGGCCTGGAGCGATTTCTAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGTCATAACTACATGAGTACTTTCTTGCTAAATTATAGATTGAAAGACGCATACTACAGTAGTAGAGAGTTGTCGTATG ] [+] EMBL CD147833 [ TCTCTCCATCTTATGGATAGTATCATCTGGAACTGGACTTGGCCTGGAGCGATTTCTAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACG CATAACTACATGAGCACTTTCTTGCTAAATTATAGATTGAACGACGCATACTACAGTAGTAGA AGTTGTCGTCTAATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACCAAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTAACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTGCTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAACCATCATTTGTTTCTAACTGATGCAGAC] consensusID : consensus_8032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [TAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGCATAAACTTTCTTGCTAAATTATAGATTGAACGACGCATACTACAGTAGTAGAAGTTGTCGTCTAATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACCAAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTAACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTGCTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAACAATCATTTGTTTCTAACTGATGCAGACGTTCACATAATGTACTTTTCCCACTTCCTGGAAGACCTAAGACAGTCGTTAGTACCACTTGTTTCATAAGCAAAAACAAGGGCCACGAAGAACAAAGCTTCGAACTTAAGCTTAATGTGCAATGAACATTGTCCTTCAAACTA] [+] EMBL CD132772 [TAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGCATAAACTTTCTTGCTAAATTATAGATTGAACGACGCATACTACAGTAGTAGAAGTTGTCGTCTAATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACCAAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTAACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTGCTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAACAATCATTTGTTTCTAACTGATGCAGACGTTCACATAATGTACTTTTCCCACTTCCTGGAAGACCTAAGACAGTCGTTAGTACCACTTGTTTCATAAGCAAAAACAAGGGCCACGAAGAACAAAGCTTCGAACTTAAGCTTAATGTGCAATGAACATTGTCCTTCAAACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8032#0 TGTCTTACGATNTAAAATGTCGTAGCCAATCAAAATAACTGGTTCATACATTTAATTCCA 60 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 ACCCATAAAAATTNTAAGGTTCAAGATCAATCCATGAGGAGTTGGAAATATACACACGAC 120 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 CTTCATTGATTAACCAGGATAGATATCAACGACCTTTGGACGACTTGTTAAGTCAGTTAA 180 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 AGAACTACGGTATATTGCTTTGTGGAACTGACTTTAATCACTGAGCGCCGAATTCGAAAC 240 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 TGGTCCATATACGAATACTTAGATGAACAGCCAAGGCAACACAATAACGTATATATTGTG 300 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 ATCACTATCAGCAATTTTACCATTCATTTATTTCTTGATCAGTATTTTACCGTAGTATGC 360 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 ATGGTGAATCAGAAATAAAGACAAACGTGGAGCTTTCCAATAAATTAATTAGTTAGTAAC 420 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 TTAATATTTCACTTGCAGAATAAAAAGAAGAGTTAAACATTAGGAAGACCGAAGTCACTT 480 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 CTACATTGTCAATGAAATACATTCATATTATGGCAAATTAAACCTATAGACGAAGTATAT 540 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 GCAACAAAATAAGTGTGATTACATGGATTACAATGCTGGGTATCTCAAAGTATACTCGAG 600 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 TACTTATACAATTATTTTTCCACAACTATTTTTTCAGTTAATTTGCTCTTAATCATCTGT 660 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 TACTTTCTTATTAAGAACCTCATCAAGTTTCTCATAGAATAGTTCTTCTGCAAACTGTTG 720 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 CCAGTTTTCAATTGTCCAAATGCGATTTCCTCCGGATATGGTCTTGTGCAATTTTTGTAA 780 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 ACACTCTACTTTAATATCCGACGCCACTTTTGCATACTGAGTTCTCCACAAACAATCTTT 840 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 AGATCTTATTGTGTGATTTGTGACTTTTCTCAAGTGAATATCCACATTATGAAGTAAATT 900 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 ATCTAGATTAATAAGCTTGCTTCTGTTTTTCTCCTCATTTTTTACAGAATCTTCATTTCG 960 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 AATCGGTTGGTTCAACAACAGTTTTAAAAAATTAAGCAAACTGACTGGACTATGTACATT 1020 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 CTCTTCACGGAACTGATTGTGATTGTATGCTTCTCCCATAAATTGTTAACTGGATCTGGC 1080 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 CACTCGAATTTTCTCTCCATCTAATGGATAGTATCATCTGGAACTGGACTTGGCCTGGAG 1140 consensus_8032#1 ------------------------------------------------------------ consensus_8032#0 CGATTTCTAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACGTCATAACTACA 1200 consensus_8032#1 -------TAAGGATACAAGTATCCATCGCACATTGACAAGCTATTGACG-CATAA----- 47 ****************************************** ***** consensus_8032#0 TGAGTACTTTCTTGCTAAATTATAGATTGAAAGACGCATACTACAGTAGTAGAGAGTTGT 1260 consensus_8032#1 -----ACTTTCTTGCTAAATTATAGATTGAACGACGCATACTACAGTAGTAGA-AGTTGT 101 ************************** ********************* ****** consensus_8032#0 CGTATGATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACC 1320 consensus_8032#1 CGTCTAATAAAACTATGACATCTTTTGCATCTAAAGTAGAGTATATGTTTATCCTCAACC 161 *** * ****************************************************** consensus_8032#0 AAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTA 1380 consensus_8032#1 AAATAACTTGTTCCTTTTCATTCAGATTGTGTATAATCTCAAAACCCTTCCATAAAGCTA 221 ************************************************************ consensus_8032#0 ACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTG 1440 consensus_8032#1 ACAGTTTCTCCAAACAACCAACAACAGCTTGACGCCAAGCCTTCCAATCAGAATTATTTG 281 ************************************************************ consensus_8032#0 CTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAAC 1500 consensus_8032#1 CTTTCAGAGAAAGCATTTGTGCTGGAACAAGTTGATCATATTCTAGCCACAAAACTGAAC 341 ************************************************************ consensus_8032#0 CATCATTTGTTTCTAACTGATGCAGAC--------------------------------- 1527 consensus_8032#1 AATCATTTGTTTCTAACTGATGCAGACGTTCACATAATGTACTTTTCCCACTTCCTGGAA 401 ************************** consensus_8032#0 ------------------------------------------------------------ consensus_8032#1 GACCTAAGACAGTCGTTAGTACCACTTGTTTCATAAGCAAAAACAAGGGCCACGAAGAAC 461 consensus_8032#0 -------------------------------------------------- consensus_8032#1 AAAGCTTCGAACTTAAGCTTAATGTGCAATGAACATTGTCCTTCAAACTA 511 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||