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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8033#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 743 fasta sequence
[TGGTACGAGGCATGAAAAGGCTGATTTGACACCGGAACCGCCTTTCAATGTTGGCCAGCTCGAAGAAGTTGATTTTCCAATGAGTGAAGATGAAACTGATCTTTTATTACAACGGTTCGACCATGAAACTCTCAAGCGTACTCATCAGGCCTATTTATCAGGACATCAATGGTTGTTCAAAATCCGTTGTGCTACGTGGAAACCAAATGCGACTCACGCTTTCTGTATCCGTCATGATGTAGACGGGATAGTTTGGTTACCATTATGCCAGAATACAATGACAGGAAAAGACCCATGTGTATGGAGACATGTCTCAACTTTGCAAGCATTTGGCTACGTCCTTGCCAGTAAACGTGATAGTAGATTTGTTTCTAGTCCAGTTTTATCTGACGGATCTCCACTGAAGTTTGTGGCAGTTGCAGACTTGACAAGGAGAATCTACATATATTGTCAGCCCATATCTAATAATTCTGGGGATACAGAACTCCAGAGACGCACAACAGCTAACTCATCTTCGACACAAAAGCAAAAGATTGTACATGTCGCATCACAACACGTAGTTACCCTACCAACTAATGACCCAATAATTGGATTTGTTGCTACAGACAAACCCTATCCATCAGTTTTAGTATGCACGCAGTCTACATTGTACTTGTTATCACTTGATGGATGAACGTAAATTACTTGCATTATCACTTGTATTTTTGCCATAGTAAATTTTACATAAAATTGTTAACAACGTT]
[+] EMBL CD082204 [TGGTACGAGGCATGAAAAGGCTGATTTGACACCGGAACCGCCTTTCAATGTTGGCCAGCTCGAAGAAGTTGATTTTCCAATGAGTGAAGATGAAACTGATCTTTTATTACAACGGTTCGACCATGAAACTCTCAAGCGTACTCATCAGGCCTATTTATCAGGACATCAATGGTTGTTCAAAATCCGTTGTGCTACGTGGAAACCAAATGCGACTCACGCTTTCTGTATCCGTCATGATGTAGACGGGATAGTTTGGTTACCATTATGCCAGAATACAATGACAGGAAAAGACCCATGTGTATGGAGACATGTCTCAACTTTGCAAGCATTTGGCTACGTCCTTGCCAGTAAACGTGATAGTAGATTTGTTTCTAGTCCAGTTTTATCTGACGGATCTCCACTGAAGTTTGTGGCAGTTGCAGACTTGACAAGGAGAATCTACATATATTGTCAGCCCATATCTAATAATTCTGGGGATACAGAACTCCAGAGACGCACAACAGCTAACTCATCTTCGACACAAAAGCAAAAGATTGTACATGTCGCATCACAACACGTAGTTACCCTACCAACTAATGACCCAATAATTGGATTTGTTGCTACAGACAAACCCTATCCATCAGTTNTAGTATGCACGCAGTCTACATTGTACTTGTTATCACTTGATGGATGAACGNTAATTACTTGCATTATCACTTGTATTTTTGCCATAGTAAA TTTACAT ANATTGTTAACAACGT ]
[-] EMBL CD074175 [ TCAAGCGTACTCATCAGGCCTATTTATCAGGACATCAATGGTTGTTCAAAATCTGTTGTGCTACGTGGAAACCAAATGCGACTCACGCTTTCTGTATCCGTCATGATGTAGACGGGATAGTTTGGTTACCATTATGCCAGAATACAATGACAGGAAAAGACCCATGTGTATGGAGACATGTCTCAACTTTGCAAGCATTTGGCTACGTCCTTGCCAGTAAACGTGATAGTAGATTTGTTTCTAGTCCAGTTTTATCTGACGGATCTCCACTGAAGTTTGTGGCAGTTGCAGACTTGACAAGGAGAATCTACATATATTGTCAGCCCATATCTAATAATTCTGGGGATACAGAACTCCAGAGACGCACAACAGCTAACTCATTTTCGACACAAAAGCAAAAGATTGTACATGTCGCATCACAACACGTAGTTACCCTACCAACTAATGACCCAATAATTGGATTTGTTGCTACAGACAAACCCTATCCATCAGTTTTAGTATGCACGCAGTCTACATTGTACTTGTTATCACTTGATGGATGAACGTAAATTACTTGCATTATCACTTGTATTTTTGCCATAGTAAATTTTACATAAAATTGTTAACAACGTT]
[+] EMBL CD135474 [ TTCAAAATCCGTTGTGCTACGTGGAAACCAAATGCGACTCACGCTTTCTGTATCCGTCATGATGTAGACGGGATAGTTTGGTTACCATTATGCCAGAATACAATGACAGGAAAAGACCCATGTGTATGGAGACATGTCTCAACTTTGCAAGCATTTGGCTACGTCCTTGCCAGTAAACGTGATAGTAGATTTGTTTCTAGTCCAGTTTTATCTGACGGATCTCCACTGAAGTTTGTGGCAGTTGCAGACTTGACAAGGAGAATCTACATATATTGTCAGCCCATATCTAATAATTCTGGGGATACAGAACTCCAGAGACGCACAACAGCTAACTCATCTTCGACACAAAAGCga ]
[-] EMBL CD075816 [ GACTCACGCTTTCTGTATCCGTCATGATGTAGACGGGATAGTTTGGTTACCATTATGCCAGAATACAATGACAGGAAAAGACCCATGTGTATGGAGACATGTCTCAACTTTGCAAGCATTTGGTTACGTCCTTGCCAGTAAACGTGATAGTAGATTTGTTTTTAGTCCAGTTTTATCTGACGGATCTCCACTGAAGTTTGTGGCAGTTGCAGACTTGACAAGGAGAATCTACATATATTGTCAGCCCATATTTAATAATTTTGGGGATACAGAACTCCAGAGACGCACAACAGTTAATTCATTTTCGACACAAAAGCAAAAGATTGTACATGTCGCATCACAACACGTAGTTACCCTACCAACTAATGACCCAATAATTGGATTTGTTGCTACAGACAAACCCTATCCATCAGTTTTAGTATGCACGCAGTTTACATTGTACTTGTTATCACTTGATGGATGAACGTAAATTACTTGCATTATCACTTGTATTTTTGCCATAGTAAATTTTACATAAAATTGTTAACAACGTT]
[+] EMBL BG931550 [ GTCTCAACTTTGCAAGCATTTGGCTACGTCCTTGCCAGTAAACGTGATAGTAGATTTGTTTCTAGTCCAGTTTTATCTGACGGATCTCCACTGAAGTTTGTGGCAGTTGCAGACTTGACAAGGAGAATCTACATATATTGTCAGCCCATATCTAATAATTCTGGGGATACAGAACTCCAGAGACGCACAACAGCTAACTCATCTTCGACACAAAAGCAAAAGATTGTACATGTCGCATCACAACACGTAGTTACCCTACCAACTAATGACCCAATAATTGGATTTGTTGCTACAGA ]
consensusID : consensus_8033#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence
[GTGATCGCCCTANACACTAATTGATCAGATGCTCTATGAACCAGTAAAGCCAACATCCTCGTGGACCTATGATCGAAAAAATAACTCCATTGAAATACATATGACCAAGCAGAATTCTCAGTATTGGCCCCGTTTGTTACTCGATCCACGTGAAAATAAAATATTAACTGAAATGCACTGTTCACATCACATTGGTCTGGATGATCAAATGCGTGTACAATCAGATGAAAAGGCTGATTTGACACCGGAACCGCCTTTCAATGTTGGCCAGCTAGAAGAAGTTGATTTTCCAATGAGTGAAGATGAAACTGATCTTTTATTACAACGGTTCGACCATGAAACTCTCAAGCGTACTCATCAGGCCTATTTATCAGGACATCAATGGTTGTTCAAAATCTGTTGTGCTACGTGGAAACCAAATGCGACTCACGCTTTCTGTATCCGTCATGATGTAGACGGGATAGTTTGGTTACCATTATGCCAGAATACAATGACAGGAAAAGACCCATGTGTATGGAGACATGTCTCAACTTTGCAAGCATTTGGCTACGTCCTTGCCAGTAAACGTGATAGTAGATTTGTTTCTAGTCCAGTTNTATCTGACGGATCNTCACTGAA]
[+] EMBL CD080257 [GTGATCGCCCTANACACTAATTGATCAGATGCTCTATGAACCAGTAAAGCCAACATCCTCGTGGACCTATGATCGAAAAAATAACTCCATTGAAATACATATGACCAAGCAGAATTCTCAGTATTGGCCCCGTTTGTTACTCGATCCACGTGAAAATAAAATATTAACTGAAATGCACTGTTCACATCACATTGGTCTGGATGATCAAATGCGTGTACAATCAGATGAAAAGGCTGATTTGACACCGGAACCGCCTTTCAATGTTGGCCAGCTAGAAGAAGTTGATTTTCCAATGAGTGAAGATGAAACTGATCTTTTATTACAACGGTTCGACCATGAAACTCTCAAGCGTACTCATCAGGCCTATTTATCAGGACATCAATGGTTGTTCAAAATCTGTTGTGCTACGTGGAAACCAAATGCGACTCACGCTTTCTGTATCCGTCATGATGTAGACGGGATAGTTTGGTTACCATTATGCCAGAATACAATGACAGGAAAAGACCCATGTGTATGGAGACATGTCTCAACTTTGCAAGCATTTGGCTACGTCCTTGCCAGTAAACGTGATAGTAGATTTGTTTCTAGTCCAGTTNTATCTGACGGATCNTCACTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8033#0 ------------------------------------------------------------
consensus_8033#1 GTGATCGCCCTANACACTAATTGATCAGATGCTCTATGAACCAGTAAAGCCAACATCCTC 60
consensus_8033#0 ------------------------------------------------------------
consensus_8033#1 GTGGACCTATGATCGAAAAAATAACTCCATTGAAATACATATGACCAAGCAGAATTCTCA 120
consensus_8033#0 ------------------------------------------------------------
consensus_8033#1 GTATTGGCCCCGTTTGTTACTCGATCCACGTGAAAATAAAATATTAACTGAAATGCACTG 180
consensus_8033#0 --------------------------------TGGTACGAG-GCATGAAAAGGCTGATTT 27
consensus_8033#1 TTCACATCACATTGGTCTGGATGATCAAATGCGTGTACAATCAGATGAAAAGGCTGATTT 240
**** * ****************
consensus_8033#0 GACACCGGAACCGCCTTTCAATGTTGGCCAGCTCGAAGAAGTTGATTTTCCAATGAGTGA 87
consensus_8033#1 GACACCGGAACCGCCTTTCAATGTTGGCCAGCTAGAAGAAGTTGATTTTCCAATGAGTGA 300
********************************* **************************
consensus_8033#0 AGATGAAACTGATCTTTTATTACAACGGTTCGACCATGAAACTCTCAAGCGTACTCATCA 147
consensus_8033#1 AGATGAAACTGATCTTTTATTACAACGGTTCGACCATGAAACTCTCAAGCGTACTCATCA 360
************************************************************
consensus_8033#0 GGCCTATTTATCAGGACATCAATGGTTGTTCAAAATCCGTTGTGCTACGTGGAAACCAAA 207
consensus_8033#1 GGCCTATTTATCAGGACATCAATGGTTGTTCAAAATCTGTTGTGCTACGTGGAAACCAAA 420
************************************* **********************
consensus_8033#0 TGCGACTCACGCTTTCTGTATCCGTCATGATGTAGACGGGATAGTTTGGTTACCATTATG 267
consensus_8033#1 TGCGACTCACGCTTTCTGTATCCGTCATGATGTAGACGGGATAGTTTGGTTACCATTATG 480
************************************************************
consensus_8033#0 CCAGAATACAATGACAGGAAAAGACCCATGTGTATGGAGACATGTCTCAACTTTGCAAGC 327
consensus_8033#1 CCAGAATACAATGACAGGAAAAGACCCATGTGTATGGAGACATGTCTCAACTTTGCAAGC 540
************************************************************
consensus_8033#0 ATTTGGCTACGTCCTTGCCAGTAAACGTGATAGTAGATTTGTTTCTAGTCCAGTTTTATC 387
consensus_8033#1 ATTTGGCTACGTCCTTGCCAGTAAACGTGATAGTAGATTTGTTTCTAGTCCAGTTNTATC 600
******************************************************* ****
consensus_8033#0 TGACGGATCTCCACTGAAGTTTGTGGCAGTTGCAGACTTGACAAGGAGAATCTACATATA 447
consensus_8033#1 TGACGGATCNTCACTGAA------------------------------------------ 618
********* *******
consensus_8033#0 TTGTCAGCCCATATCTAATAATTCTGGGGATACAGAACTCCAGAGACGCACAACAGCTAA 507
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 CTCATCTTCGACACAAAAGCAAAAGATTGTACATGTCGCATCACAACACGTAGTTACCCT 567
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 ACCAACTAATGACCCAATAATTGGATTTGTTGCTACAGACAAACCCTATCCATCAGTTTT 627
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 AGTATGCACGCAGTCTACATTGTACTTGTTATCACTTGATGGATGAACGTAAATTACTTG 687
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 CATTATCACTTGTATTTTTGCCATAGTAAATTTTACATAAAATTGTTAACAACGTT 743
consensus_8033#1 --------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||