cluster # 8038

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8038 cluster # 8038 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8038#0 length = 560 sequences # 4

consensus_8038#1 length = 252 sequences # 1
consensus_8038#2 length = 165 sequences # 1

consensusID : consensus_8038#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 560
fasta sequence

                              [TTCGGTCCGAGGGGTCGTTTAAACGTTTTGGCGGG-GACCAGAAAATTCGCACGAAATCATGTCGAGTCACCTCGTTTGGGATCTAATTAAACACAACCATTGTTTCCTAATGAAACGTGGCCGCGAACGTTTTAGTCGTGATCCACTCAACTTAAAGGGAAAGAACTGCTTCAGGTATTGTGGTCTTGTTCACAAGAAGGCTATCGGGATCAAGGAGGAGAAATACGGAAAGGGTGTTGTAGTCATCACAAAGAATGTTGCGAAAGACCACAAACCAGCCAAAGCAGTTACACGAACAAAGTTTGTGCGTGGACGTAGACCCACCTTGAAAAAAATCAGGAACTTGACATGCAAGCAAAAGTACAGAAGAGAACTAAAGATGCTGGCTCTACGTCGAGCTAGTGCGTTGATGCTT-AACATGAAGCCTGTCGCACAATCAGCCCCCGAAATCAAGAAAAGACATA-GTTTTTATTGCCTTGGNAAAATCAAAATTGTAAACACTTCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCTACCGTACTGCGTA]

[+] EMBL CD077621             [TTCGGTCCGAGGGGTCGTTTAAACGTTTTGGCGGG GACCAGAAAATTCGCACGAAATCATGTCGAGTCACCTCGTTTGGGATCTAATTAAACACAACCATTGTTTCCTAATGAAACGTGGCCGCGAACGTTTTAGTCGTGATCCACTCAACTTAAAGGGAAAGAACTGCTTCAGGTATTGTGGTCTTGTTCACAAGAAGGCTATCGGGATCAAGGAGGAGAAATACGGAAAGGGTGTTGTAGTCATCACAAAGAATGTTGCGAAAGACCACANACCAGCCAAAGCAGTTACACGAACAAAGTTTGTGCGTGGACGTAGACCCACCTTGAAAAAAATCAGGAACTTGACATGNCAGCANAAGTACAGAAGAGAACTAAAGATGCTGGTTCTACGTCGAGCTAGTGCGTTGATGCTTAAACATG AGCCTGTCGCACAATCAGCCCCCGAAATCAAGAAAAGACATA GTTTTTATTGCCTTGGNAAAATCAAAA                                                                     ]
[+] EMBL CD141739             [             ggCGTTTAAACGTTTTGGCGGGNGACCAGAAAATTCGCACGAAATCATGTCGAGTCACCTCGTTTGGGATCTAATTAAACACAACCATTGTTTCCTAATGAAACGTGGCCGCGAACGTTTTAGTCGTGATCCACTCAACTTAAAGGGAAAGAACTGCTTCAGGTATTGTGGTCTTGTTCACAAGAAGGCTATCGTGATCAAGGAGGAGAAATACGGAAAGGGTGTTGTAGTCATCACAAAGAATGTTGCGAAAGACCACAAACCAGCCAAAGCAGTTACACGAACAAAGTTTGTGCGTGGACGTAGACCCACCTTGAAAAAAATCAGGAACTTGACATGCAAGCAAAAGTACAGAAGAGAACTAAAGATGCTGGCTCTACGTCGAGCTAGTGCGTTGATGCTT AACATGAAGCCTGTCG                                                                                                                                  ]
[-] EMBL AW017302             [                                                                                                                                 GTTTTAGTCGTGATCCACTCAACTTAAAGGGAAAGAACTGCTTCAGGTATTGTGGTCTTGTTCACAAGAAGGCTATCGGGATCAAGGAGGAGAAATACGGAAAGGGTGTTGTAGTCATCACAAAGAATGTTGCGAAAGACCACAAACCAGCCAAAGCAGTTACACGAACAAAGTTTGTGCGTGGACGTAGACCCACCTTGAAAAAAATCAGGAACTTGACATGCAAGCAAAAGTACAGAAGAGAACTAAAGATGCTGGCTCTACGTCGAGCTAGTGCGTTGATGCTT AACATGAAGCCTGTCGCACAATCAGCCCCGAAAACCAAG  AAGACATAGGTTTTTATTGTCTTGGTAAAATAAAATTTGTAAACACTTCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCTACCGTACTGCGTA]
[+] EMBL BG932890             [                                                                                                                                                CACTCAACTTAAAGGGAAAGAACTGCTTCAGGTATTGTGGTCTTGTTCACAAGAAGGCTATCGGGATCAAGGAGGAGAAATACGGAAAGGGTGTTGTAGTCATCACAAAGAATGTTGCGAAAGACCACAAACCAGCCAAAGCAGTTACACGAACAAAGTTTGTGCGTGGACGTAGACCCACCTTGAAAAAAATCAGGAACTTGACATGCAAGCAAAAGTACAGAAGAGAACTAAAGATGCTGGCTCTACGTCGAGCTAGTGCGTTGATGCTT AACATGAAGCCTGTCGC                                                                                                                                 ]




>consensus_8038#0
TTCGGTCCGAGGGGTCGTTTAAACGTTTTGGCGGGGACCAGAAAATTCGCACGAAATCAT
GTCGAGTCACCTCGTTTGGGATCTAATTAAACACAACCATTGTTTCCTAATGAAACGTGG
CCGCGAACGTTTTAGTCGTGATCCACTCAACTTAAAGGGAAAGAACTGCTTCAGGTATTG
TGGTCTTGTTCACAAGAAGGCTATCGGGATCAAGGAGGAGAAATACGGAAAGGGTGTTGT
AGTCATCACAAAGAATGTTGCGAAAGACCACAAACCAGCCAAAGCAGTTACACGAACAAA
GTTTGTGCGTGGACGTAGACCCACCTTGAAAAAAATCAGGAACTTGACATGCAAGCAAAA
GTACAGAAGAGAACTAAAGATGCTGGCTCTACGTCGAGCTAGTGCGTTGATGCTTAACAT
GAAGCCTGTCGCACAATCAGCCCCCGAAATCAAGAAAAGACATAGTTTTTATTGCCTTGG
NAAAATCAAAATTGTAAACACTTCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGC
AGCTGCTACCGTACTGCGTA

consensusID : consensus_8038#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [AAGGAGGAGAAATACGGAAAGGGTGTTGTAGTCATCACAAAGAATGTTGCGAAAGACCACAAACCAGCCAAAGCAGTTACACGAACAAAGTTTGTGCGTGGACGTAGACCCACCTTGAAAAAAATCAGGAACTTGACATGCAAGCAAAAGTACAGAAGAGAACTAAAGATGCTGGTTCTACGTCGAGCTAGTGCGTTGATGCTTAACATGAAGCCTGTCGCACAATCAGCCGCTCAGCCGCTCCTGCTGCCT]

[+] EMBL CD170188             [AAGGAGGAGAAATACGGAAAGGGTGTTGTAGTCATCACAAAGAATGTTGCGAAAGACCACAAACCAGCCAAAGCAGTTACACGAACAAAGTTTGTGCGTGGACGTAGACCCACCTTGAAAAAAATCAGGAACTTGACATGCAAGCAAAAGTACAGAAGAGAACTAAAGATGCTGGTTCTACGTCGAGCTAGTGCGTTGATGCTTAACATGAAGCCTGTCGCACAATCAGCCGCTCAGCCGCTCCTGCTGCCT]




>consensus_8038#1
AAGGAGGAGAAATACGGAAAGGGTGTTGTAGTCATCACAAAGAATGTTGCGAAAGACCAC
AAACCAGCCAAAGCAGTTACACGAACAAAGTTTGTGCGTGGACGTAGACCCACCTTGAAA
AAAATCAGGAACTTGACATGCAAGCAAAAGTACAGAAGAGAACTAAAGATGCTGGTTCTA
CGTCGAGCTAGTGCGTTGATGCTTAACATGAAGCCTGTCGCACAATCAGCCGCTCAGCCG
CTCCTGCTGCCT

consensusID : consensus_8038#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 165
fasta sequence

                              [ACCTNGNAAAAAAATCAGGAACTTGACATGNAAGCAAAAATACAGAAGAGAACTAAAGATGCTGGCTCTACGTCGAGCTAGTGNGTTGATGNTTAACATGAAGCCTGTCGCACAATCGGNCCCGAAAACCAAGAAGACATAGGTTTTTATTTTCTTGGTAAAATA]

[+] EMBL SM933                [ACCTNGNAAAAAAATCAGGAACTTGACATGNAAGCAAAAATACAGAAGAGAACTAAAGATGCTGGCTCTACGTCGAGCTAGTGNGTTGATGNTTAACATGAAGCCTGTCGCACAATCGGNCCCGAAAACCAAGAAGACATAGGTTTTTATTTTCTTGGTAAAATA]




>consensus_8038#2
ACCTNGNAAAAAAATCAGGAACTTGACATGNAAGCAAAAATACAGAAGAGAACTAAAGAT
GCTGGCTCTACGTCGAGCTAGTGNGTTGATGNTTAACATGAAGCCTGTCGCACAATCGGN
CCCGAAAACCAAGAAGACATAGGTTTTTATTTTCTTGGTAAAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8038#0      TTCGGTCCGAGGGGTCGTTTAAACGTTTTGGCGGGGACCAGAAAATTCGCACGAAATCAT 60
consensus_8038#1      ------------------------------------------------------------
consensus_8038#2      ------------------------------------------------------------
                                                                                  

consensus_8038#0      GTCGAGTCACCTCGTTTGGGATCTAATTAAACACAACCATTGTTTCCTAATGAAACGTGG 120
consensus_8038#1      ------------------------------------------------------------
consensus_8038#2      ------------------------------------------------------------
                                                                                  

consensus_8038#0      CCGCGAACGTTTTAGTCGTGATCCACTCAACTTAAAGGGAAAGAACTGCTTCAGGTATTG 180
consensus_8038#1      ------------------------------------------------------------
consensus_8038#2      ------------------------------------------------------------
                                                                                  

consensus_8038#0      TGGTCTTGTTCACAAGAAGGCTATCGGGATCAAGGAGGAGAAATACGGAAAGGGTGTTGT 240
consensus_8038#1      -------------------------------AAGGAGGAGAAATACGGAAAGGGTGTTGT 29
consensus_8038#2      ------------------------------------------------------------
                                                                                  

consensus_8038#0      AGTCATCACAAAGAATGTTGCGAAAGACCACAAACCAGCCAAAGCAGTTACACGAACAAA 300
consensus_8038#1      AGTCATCACAAAGAATGTTGCGAAAGACCACAAACCAGCCAAAGCAGTTACACGAACAAA 89
consensus_8038#2      ------------------------------------------------------------
                                                                                  

consensus_8038#0      GTTTGTGCGTGGACGTAGACCCACCTTGAAAAAAA-TCAGGAACTTGACATGCAAGCAAA 359
consensus_8038#1      GTTTGTGCGTGGACGTAGACCCACCTTGAAAAAAA-TCAGGAACTTGACATGCAAGCAAA 148
consensus_8038#2      ----------------------ACCTNGNAAAAAAATCAGGAACTTGACATGNAAGCAAA 38
                                            **** * ****** **************** *******

consensus_8038#0      AGTACAGAAGAGAACTAAAGATGCTGGCTCTACGTCGAGCTAGTGCGTTGATGCTTAACA 419
consensus_8038#1      AGTACAGAAGAGAACTAAAGATGCTGGTTCTACGTCGAGCTAGTGCGTTGATGCTTAACA 208
consensus_8038#2      AATACAGAAGAGAACTAAAGATGCTGGCTCTACGTCGAGCTAGTGNGTTGATGNTTAACA 98
                      * ************************* ***************** ******* ******

consensus_8038#0      TGAAGCCTGTCGCACAATCAGCCCCCGAAATCAAGAAAAGACATAGTTTTTATTGCCTTG 479
consensus_8038#1      TGAAGCCTGTCGCACAATCAGCCGCTCAGCC--------------GCTCCTGCTGCCT-- 252
consensus_8038#2      TGAAGCCTGTCGCACAATCGGNCCCGAAAACCAAGAAGACATAG-GTTTTTATTTTCTTG 157
                      ******************* * * *  *                 * *  *  *  **  

consensus_8038#0      GNAAAATCAAAATTGTAAACACTTCAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATG 539
consensus_8038#1      ------------------------------------------------------------
consensus_8038#2      GTAAAATA---------------------------------------------------- 165
                                                                                  

consensus_8038#0      CAGCTGCTACCGTACTGCGTA 560
consensus_8038#1      ---------------------
consensus_8038#2      ---------------------