cluster # 8040

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Schistosoma mansoni
cluster # 8040 cluster # 8040 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8040#0 length = 865 sequences # 4

consensus_8040#1 length = 352 sequences # 2

consensusID : consensus_8040#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 865
fasta sequence

                              [ATTTATATTTGACTGAAAATGAACAGTGTATACAATAAAATAGTAATTCACTATACATATGTGAACATATAAACATACGAAATGTTAGTCTTTGTATGCATTCATTTTTTCTTTAATATTTCGTACTATCTCCTGTACTGATTTATTTTGTCCGTAATAGTCGGAGAATTGTCCTTTCGGATCCAATAAGTACATTATAATAGTGTGGTCAACAATATAATCGCCATCAGCATCTTTTGGACCTGGACTGTAATAAATACGATAGAGCTTAGAAACTTTATCAATTTCCTTTTTAGTACCAGTCAGCCCAGTCAAACGTGGTGAAAAGTCTTTAACGTACTTGGCTAAAACATCTGGGGTATCACGTTCGCTGTCGACAGACACAAATACAGGCACTAAGGGGTACTTGGGCTTTTCAATAAGCATTATTCTGTCAGACACTTCCACAAGTCTCTCTATTTGTTCTGGGCATATATCTGGACATCGGCAGAACCCAAAGTACAACAGAACCCATTTCCCGCGGAAATCAGATAATTTACATGGGTTCCCGTTATGATCAATTAAATTGAAA-TCCCCACCAATAGATGGCAGACCATATTTTCCCTCTGATAATTCTGTTGCTTTCATGAAGTCTCTTGTCAGAGAGACTGCGGCTACGGTGGCTGACCCTGCAATGACGATATAAGAGCACCATTGTATATAACGCATCCGCTCTTCTGGACTAAGAGTTGACCTGAACCTGACAGGAATAAGACTTCGAGACAACACTTTACTGAACTCTTTGATCATTCCAATTAATTAGGTTACCTCGGCATCCCCAAGAACTTATAAGAAGAACTTATATAAGAAAAAACACGCATATTTG]

[+] EMBL CD073343             [ATTTATATTTGACTGAAAATGAACAGTGTATACAATAAAATAGTAATTCACTATACATATGTGAACATATAAACATACGAAATGTTAGTCTTTGTATGCATTCATTTTTTCTTTAATATTTCGTACTATCTCCTGTACTGATTTATTTTGTCCGTAATAGTCGGAGAATTGTCCTTTCGGATCCAATAAGTACATTATAATAGTGTGGTCAACAATATAATCGCCATCAGCATCTTTTGGACCTGGACTGTAATAAATACGATAGAGCTTAGAAACTTTATCAATTTCCTTTTTAGTACCAGTCAGCCCAGTCAAACGTGGTGAAAAGTCTTTAACGTACTTGGCTAAAACATCTGGGGTATCACGTTCGCTGTCGACAGACACAAATACAGGCACTAAGGGGTACTTGGGCTTTTCAATAAGCATTATTCTGTCAGACACTTCCACAAGTCTCTCTATTTGTTCTGGGCATATATCTGGACATCGGCAGAACCCAAAGTACAACAGAACCCATTTCCCGCGGAAATCAGATAATTTACATGGGTTCCCGTTATGATCAATTAAATTGAAA TCCCCACCAATAGATG                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD144072             [                                                                                                                                                                                                                                                ACCTGGACTGTAATAAATACGATAGAGCTTAGAAACTTTATCAATTTCCTTTTTAGTACCAGTCAGCCCAGTCAAACGTGGTGAAAAGTCTTTAACGTACTTGGCTAAAACATCTGGGGTATCACGTTCGCTGTCGACAGACACAAATACAGGCACTAAGGGGTACTTGGGCTTTTCAATAAGCATTATTCTGTCAGACACTTCCACAAGTCTCTCTATTTGTTCTGGGCATATATCTGGACATCGGCAGAACCC AAGTACAACAGAACCCATTTCCCGCGGGAATCAGATAATTTACATGGGTTCCCGTTATGATCAATTAAA TGAAA TCCC                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD133641             [                                                                                                                                                                                                                                                               AATACGATAGAGCTTAGAAACTTTATCAATTTCCTTTTTAGTACCAGTCAGCCCAGTCAAACGTGGTGAAAAGTCTTTAACGTACTTGGCTAAAACATCTGGGGTATCACGTTCGCTGTCGACAGACACAAATACAGGCACTAAGGGGTACTTGGGCTTTTCAATAAGCATTATTCTGTCAGACACTTCCACAAGTCTCTCTATTTGTTCTGGGCATATATCTGGACATCGGCAGAACCCAAAGTACAACAGAACCCATTTCCCGCGGAAATCAGATAATTTACATGGGTTCCCGTTATGATCAATTAAATTGAAATTCCCCACCAATAGATGGCAGACCATATTT                                                                                                                                                                                                                                                                         ]
[-] EMBL CD078883             [                                                                                                                                                                                                                                                                                              TCCTTTNTAGTACCAGTCAGCCCAGTCAAACGTGGTGAAAAGTCTTTAACGTACTTGGCTAAAACATCTGGGGTATCACGTTCGCTGTCGACAGACACAAATACAGGCACTAAGGGGTACTTGGGCTTTTCAATAAGCATTATTCTGTCAGACACTTCCACAAGTCTCTCTATTTGTTCTGGGCATATATCTGGACATCGGCAGAACCCAAAGTACAACAGAACCCATTTCCCGCGGAAATCAGATAATTTACATGGGTTCCCGTTATGATCAATTAAATTGAAA TCCCCACCAATAGATGGCAGACCATATTTTCCCTCTGATAATTCTGTTGCTTTCATGAAGTCTCTTGTCAGAGAGACTGCGGCTACGGTGGCTGACCCTGCAATGACGATATAAGAGCACCATTGTATATAACGCATCCGCTCTTCTGGACTAAGAGTTGACCTGAACCTGACAGGAATAAGACTTCGAGACAACACTTTACTGAACTCTTTGATCATTCCAATTAATTAGGTTACCTCGGCATCCCCAAGAACTTATAAGAAGAACTTATATAAGAAAAAACACGCATATTTG]




>consensus_8040#0
ATTTATATTTGACTGAAAATGAACAGTGTATACAATAAAATAGTAATTCACTATACATAT
GTGAACATATAAACATACGAAATGTTAGTCTTTGTATGCATTCATTTTTTCTTTAATATT
TCGTACTATCTCCTGTACTGATTTATTTTGTCCGTAATAGTCGGAGAATTGTCCTTTCGG
ATCCAATAAGTACATTATAATAGTGTGGTCAACAATATAATCGCCATCAGCATCTTTTGG
ACCTGGACTGTAATAAATACGATAGAGCTTAGAAACTTTATCAATTTCCTTTTTAGTACC
AGTCAGCCCAGTCAAACGTGGTGAAAAGTCTTTAACGTACTTGGCTAAAACATCTGGGGT
ATCACGTTCGCTGTCGACAGACACAAATACAGGCACTAAGGGGTACTTGGGCTTTTCAAT
AAGCATTATTCTGTCAGACACTTCCACAAGTCTCTCTATTTGTTCTGGGCATATATCTGG
ACATCGGCAGAACCCAAAGTACAACAGAACCCATTTCCCGCGGAAATCAGATAATTTACA
TGGGTTCCCGTTATGATCAATTAAATTGAAATCCCCACCAATAGATGGCAGACCATATTT
TCCCTCTGATAATTCTGTTGCTTTCATGAAGTCTCTTGTCAGAGAGACTGCGGCTACGGT
GGCTGACCCTGCAATGACGATATAAGAGCACCATTGTATATAACGCATCCGCTCTTCTGG
ACTAAGAGTTGACCTGAACCTGACAGGAATAAGACTTCGAGACAACACTTTACTGAACTC
TTTGATCATTCCAATTAATTAGGTTACCTCGGCATCCCCAAGAACTTATAAGAAGAACTT
ATATAAGAAAAAACACGCATATTTG

consensusID : consensus_8040#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 352
fasta sequence

                              [GAACCCGAAGTACAACAGAACCCATTTCCCGCGGAAATCAGATAATTAACATGGGTTCCCGTTATGATCAATTAAATTGAAATCCCCACCAATAGATGGCAGACCATATTTTCCCTCTGATAATTCTGTTGCTTTCATGAAGTCTCTTGTCAGAGAGACTGCGGCTACGGTGGCTGACCCTGCAATGACGATATAAGAGCACCATTGTATATAACGCATCCGCTCTTCTGGACTAAGAGTTGACCTGAACCTGACAGGAATAAGAATTCGAGACAACAC--TA--CGGCATCCCCAAGAACTTATAAGAAGAAC-TATATAAGAAAAAACACGCATATTTGATCGATTAGTATTTCG]

[-] EMBL CD187293             [GAACCCGAAGTACAACAGAACCCATTTCCCGCGGAAATCAGATAATTAACATGGGTTCCCGTTATGATCAATTAAATTGAAATCCCCACCAATAGATGGCAGACCATATTTTCCCTCTGATAATTCTGTTGCTTTCATGAAGTCTCTTGTCAGAGAGACTGCGGCTACGGTGGCTGACCCTGCAATGACGATATAAGAGCACCATTGTATATAACGCATCCGCTCTTCTGGACTAAGAGTTGACCTGAACCTGACAGGAATAAGAATTCGAGACAACAC  TA  CGGCATCCCCAAGAACTTATAAGAAGAAC TATATAAGAAAAAACACGCATATTTGATCGATTAGTA     ]
[-] EMBL CD144409             [                                          TAATTACCATGGGTTCCCGTTATGATCAATTAAATTGAAATCCCCACCAATAGATGGCAGACCATATTTCCCCTCTGATAATTCTGTTGCTTTCATGAAGTCTCTTGTCAGAGAGACTGCGGCTACGGTGGCTGACCCTGCAATGACGATATAAGAGCACCATTGTATATAACGCATCCGCTCTTCTGGACTAAGAGTTGACCTGAACCTGACAGGAATAAGACTTCGAGACAACACTTTACTCGGCATCCCCAAGAACTTATAAGAAGAACTTATATAAGAAAAAACACGCATATTTGATCGATTAGTATTTCG]




>consensus_8040#1
GAACCCGAAGTACAACAGAACCCATTTCCCGCGGAAATCAGATAATTAACATGGGTTCCC
GTTATGATCAATTAAATTGAAATCCCCACCAATAGATGGCAGACCATATTTTCCCTCTGA
TAATTCTGTTGCTTTCATGAAGTCTCTTGTCAGAGAGACTGCGGCTACGGTGGCTGACCC
TGCAATGACGATATAAGAGCACCATTGTATATAACGCATCCGCTCTTCTGGACTAAGAGT
TGACCTGAACCTGACAGGAATAAGAATTCGAGACAACACTACGGCATCCCCAAGAACTTA
TAAGAAGAACTATATAAGAAAAAACACGCATATTTGATCGATTAGTATTTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8040#0      ATTTATATTTGACTGAAAATGAACAGTGTATACAATAAAATAGTAATTCACTATACATAT 60
consensus_8040#1      ------------------------------------------------------------
                                                                                  

consensus_8040#0      GTGAACATATAAACATACGAAATGTTAGTCTTTGTATGCATTCATTTTTTCTTTAATATT 120
consensus_8040#1      ------------------------------------------------------------
                                                                                  

consensus_8040#0      TCGTACTATCTCCTGTACTGATTTATTTTGTCCGTAATAGTCGGAGAATTGTCCTTTCGG 180
consensus_8040#1      ------------------------------------------------------------
                                                                                  

consensus_8040#0      ATCCAATAAGTACATTATAATAGTGTGGTCAACAATATAATCGCCATCAGCATCTTTTGG 240
consensus_8040#1      ------------------------------------------------------------
                                                                                  

consensus_8040#0      ACCTGGACTGTAATAAATACGATAGAGCTTAGAAACTTTATCAATTTCCTTTTTAGTACC 300
consensus_8040#1      ------------------------------------------------------------
                                                                                  

consensus_8040#0      AGTCAGCCCAGTCAAACGTGGTGAAAAGTCTTTAACGTACTTGGCTAAAACATCTGGGGT 360
consensus_8040#1      ------------------------------------------------------------
                                                                                  

consensus_8040#0      ATCACGTTCGCTGTCGACAGACACAAATACAGGCACTAAGGGGTACTTGGGCTTTTCAAT 420
consensus_8040#1      ------------------------------------------------------------
                                                                                  

consensus_8040#0      AAGCATTATTCTGTCAGACACTTCCACAAGTCTCTCTATTTGTTCTGGGCATATATCTGG 480
consensus_8040#1      ------------------------------------------------------------
                                                                                  

consensus_8040#0      ACATCGGCAGAACCCAAAGTACAACAGAACCCATTTCCCGCGGAAATCAGATAATTTACA 540
consensus_8040#1      ---------GAACCCGAAGTACAACAGAACCCATTTCCCGCGGAAATCAGATAATTAACA 51
                               ****** **************************************** ***

consensus_8040#0      TGGGTTCCCGTTATGATCAATTAAATTGAAATCCCCACCAATAGATGGCAGACCATATTT 600
consensus_8040#1      TGGGTTCCCGTTATGATCAATTAAATTGAAATCCCCACCAATAGATGGCAGACCATATTT 111
                      ************************************************************

consensus_8040#0      TCCCTCTGATAATTCTGTTGCTTTCATGAAGTCTCTTGTCAGAGAGACTGCGGCTACGGT 660
consensus_8040#1      TCCCTCTGATAATTCTGTTGCTTTCATGAAGTCTCTTGTCAGAGAGACTGCGGCTACGGT 171
                      ************************************************************

consensus_8040#0      GGCTGACCCTGCAATGACGATATAAGAGCACCATTGTATATAACGCATCCGCTCTTCTGG 720
consensus_8040#1      GGCTGACCCTGCAATGACGATATAAGAGCACCATTGTATATAACGCATCCGCTCTTCTGG 231
                      ************************************************************

consensus_8040#0      ACTAAGAGTTGACCTGAACCTGACAGGAATAAGACTTCGAGACAACACTTTACTGAACTC 780
consensus_8040#1      ACTAAGAGTTGACCTGAACCTGACAGGAATAAGAATTCGAGACAACACTA---------- 281
                      ********************************** **************           

consensus_8040#0      TTTGATCATTCCAATTAATTAGGTTACCTCGGCATCCCCAAGAACTTATAAGAAGAACTT 840
consensus_8040#1      -----------------------------CGGCATCCCCAAGAACTTATAAGAAGAACT- 311
                                                   ****************************** 

consensus_8040#0      ATATAAGAAAAAACACGCATATTTG---------------- 865
consensus_8040#1      ATATAAGAAAAAACACGCATATTTGATCGATTAGTATTTCG 352
                      *************************