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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8046#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1425 fasta sequence
[CCTGAGTTGCCAATTCAAGAACAAAATCTACAGACTAAATTGCCAATCACCTCGTTTTCGTTTCCTGAAGCTAGTGATTAGGAATTCTTCAAATTTATTCTGATGCCTAGCAAATTTTCAGTCTTCACGTATGCCGCTAGGGGGTTGAGTTCTCATTGGAACCATGTTAAACTCGGACCTCCAGATGCAATTTTGGGAATTACCGAGGCATATAATCGTGATACTAATCCTCAGAAGATTAATCTTGGAGCTGGTGCCTATAGAGATGATAATGGCAAACCTTTCGTCTTACCATCTGTCAAAGAGGCTGAATCACTTTTGTTGGCGAAAAATTTGAATAAAGAATATGCTCCAATCAGTGGTATCCCACAATTTTGCGATCTGTCCATTAAGCTTGCACTTACTGATCAATCTTCACGAATAAAAAATCGCTGTAACGCTACAACTCAGACAATATCTGGTACTGGAGCCCTTAGAGTCGGTGGAGCTTTTATCAATGAATTTGCAGAACAAAAACATATATGGATGCCAACACCTACTTGGGGCAACCATAAACCTATTTTCACACATAGTGGACTAAATGTACACCAATATCGTTATTACAATAGTAATACTTGTGGTCTCGATATAGATGGTTGTTTATCTGATTTATCAAAAATTCCCAAAGGACATTTCGTTTTACTTCATGCATGTGCGCATAATCCTACTGGAGTAGATCCATCATTTGATCAATGGAAAAAAATTGGAGAGATTTTGAAGTCACGTGATTTAATCCCATTTTTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATACGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAAAGTTTTGCTAAGAACATGGGATTATATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGATGAAGCTGAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCACCGATTCATGGCGCACGTATTGCAACGGAAATTGATGTCTAATCCTGATTTAACGTC-AAAGTGGCTCATTGATTTG-AAACTATGGCTGATCGTATTATTAC-ATGCGTCAAAGTTTAAGAAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGGAATGTTCTGCTATTCTGGGCTTAATCCATCACAGGTTGAAAAGCTGACTAGTGAATATTCTATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGACTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGTGTTTCTTTTTTTATTATCTGTTTGTTAATTTATACCCAATATATATACAAATATATTATTTA]
[+] EMBL CD162379 [CCTGAGTTGCCAATTCAAGAACAAAATCTACAGACTAAATTGCCAATCACCTCGTTTTCGTTTCCTGAAGCTAGTGATTAGGAATTCTTCAAATTTATTCTGATGCCTAGCAAATTTTCAGTCTTCACGTATGCCGCTAGGGGGTTGAGTTCTCATTGGAACCATGTTAAACTCGGACCTCCAGATGCAATTTTGGGAATTACCGAGGCATATAATCGTGATACTAATCCTCAGAAGATTAATCTTGGAGCTGGTGCCTATAGAGATGATAATGGCAAACCTTTCGTCTTACCATCTGTCAAAGAGGCTGAATCACTTTTGTTGGCGAAAAATTTGAATAAAGAATATGCTCCAATCAGTGGTATCCCACAATTTTGCGATCTGTCCATTAAGCTTGCACTTACTGATCAATCTTCACGAATAAAAAATCGC ]
[-] EMBL CD094952 [ CAAAATCTACAGACTAAATTGCCAATCACCTCGTTTTCGTTTCCTGAAGCTAGTGATTAGGAATTCTTCAAATTTATTCTGATGCCTAGCAAATTTTCAGTCTTCACGTATGCCGCTAGGGGGTTGAGTTCTCATTGGAACCATGTTAAACTCGGACCTCCAGATGCAATTTTGGGAATTACCGAGGCATATAATCGTGATACTAATCCTCAGAAGATTAATCTTGGAGCTGGTGCCTATAGAGATGATAATGGCAAACCTTTCGTCTTACCATCTGTCAAAGAGGCTGAATCACTTTTGTTGGCGAAAAATTTGAATAAAGAATATGCTCCAATCAGTGGTATCCCACAATTTTGCGATCTGTCCATTAAGCTTGCACTTACTGATCAATCTTCACGAATAAAAAATCGCTGTAACGCTACAACTCAGACAATATCTGGTACTGGAGCCCTTAGAGTCGGTGGAGCTTTTATCAATGAATTTGCAGAACAAAAACATATATGGATGCCAACACCTACTTGGGGCAACCATAAAC ]
[+] EMBL CD155496 [ CATGTTAAACTCGGACCTCCAGATGCAATTTTGGGAATTACCGAGGCATATAATCGTGATACTAATCCTCAGAAGATTAATCTTGGAGCTGGTGCCTATAGAGATGATAATGGCAAACCTTTCGTCTTACCATCTGTCAAAGAGGCTGAATCACTTTTGTTGGCGAAAAATTTGAATAAAGAATATGCTCCAATCAGTGGTATCCCACAATTTTGCGATCTGTCCATTAAGCTTGCACTTACTGATCAATCTTCACGAATAAAAAATCGCTGTAACGCTACAACTCAGACAATATCTGGTACTGGAGCCCTTAGAGTCGGTGGAGCTTTTATCAATGAATTTGCAGAACAAAAACATATATGGATGCCAACACCTACTTGGGGCAACCATAAACCTAT ]
[+] EMBL CD080129 [ TGTAACGCTACAACTCAGACAATATCTGGTACTGGAGCCCTTAGAGTCGGTGGAGCTTTTATCAATGAATTTGCAGAACAAAAACATATATGGATGCCAACACCTACTTGGGGCAACCATAAACCTATTTTCACACATAGTGGACTAAATGTACACCAATATCGTTATTACAATAGTAATACTTGTGGTCTCGATATAGATGGTTGTTTATCTGATTTATCAAAAATTCCCAAAGGACATTTCGTTTTACTTCATGCATGTGCGCATAATCCTACTGGAGTAGATCCATCATTTGATCAATGGAAAAAAATTGGAGAGATTTTGAAGTCACGTGATTTAATCCCATTTTTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATACGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAAAGTTTTGCTAAGAACATGGGATTATATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGATGAAGCTGAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCACCGATTCATGGCGCACGTATTGCAACGGAAATTGATGTCTAATCCTGATTTAACGTC AAAGTGGCTCATTGATTTG AAACTATGGCTGATCGTATTATTAC ATGCGT ]
[-] EMBL CD074822 [ AGA TTTGAAGTCACGTGATTTAATCCCATTTTTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATACGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAAAGTTTTGCTAAGAACATGGGATTATATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGATGAAGCTAAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCACCGATTCATGGCGCACGTATTGCAACGG AATTGATGTCTAATCCTGATTT ACGTCAAAAGTGGCTCATTGATTTGAAAACTATGGCTGATCGTATTATTACAATGCGTCAAAGTTTAAGAAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGGAATGTTCTGCTATTCTGGGCTTAATCCATCACAGGTTGAAAAGCTGACTAGTGAATATTCTATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGACTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGTGTTTCTTTTTTTATTATCTGTTTGTTAATTTATACCCAATATATATACAAATATATTATTTA]
consensusID : consensus_8046#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[TGCGCATAATCCCACTGGAGTAGATCCATCATTTGATCAATGGACGTGATTTAATCCCATTTTTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATACGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAANNNNNNNNNNNNNNNNNNNNNNNNATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGATGAAGCTAAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCACCGATTCATGGCGCACGTATTGCAANNNNNNNNNNNNNNNNNNNNNATTTACGTCAAAAGTGGCTCATTGATTTGAAAACTATGGCTGATCGTATTATTACAATGCGTCAAAGTTTAAGAAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGGAATGTTCTGCTATTCTGGGCTTAATCCATCNNNNGTTGAAAAGCTGACTAGTGAATATTCTATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGACTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGGGTTTCTTTNTTTATTATCTGGTTGGTT]
[+] EMBL CD080996 [TGCGCATAATCCCACTGGAGTAGATCCATCATTTGATCAATGGACGTGATTTAATCCCATTTTTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATACGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAANNNNNNNNNNNNNNNNNNNNNNNNATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGATGAAGCTAAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCACCGATTCATGGCGCACGTATTGCAANNNNNNNNNNNNNNNNNNNNNATTTACGTCAAAAGTGGCTCATTGATTTGAAAACTATGGCTGATCGTATTATTACAATGCGTCAAAGTTTAAGAAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGGAATGTTCTGCTATTCTGGGCTTAATCCATCNNNNGTTGAAAAGCTGACTAGTGAATATTCTATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGACTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGGGTTTCTTTNTTTATTATCTGGTTGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8046#0 CCTGAGTTGCCAATTCAAGAACAAAATCTACAGACTAAATTGCCAATCACCTCGTTTTCG 60
consensus_8046#1 ------------------------------------------------------------
consensus_8046#0 TTTCCTGAAGCTAGTGATTAGGAATTCTTCAAATTTATTCTGATGCCTAGCAAATTTTCA 120
consensus_8046#1 ------------------------------------------------------------
consensus_8046#0 GTCTTCACGTATGCCGCTAGGGGGTTGAGTTCTCATTGGAACCATGTTAAACTCGGACCT 180
consensus_8046#1 ------------------------------------------------------------
consensus_8046#0 CCAGATGCAATTTTGGGAATTACCGAGGCATATAATCGTGATACTAATCCTCAGAAGATT 240
consensus_8046#1 ------------------------------------------------------------
consensus_8046#0 AATCTTGGAGCTGGTGCCTATAGAGATGATAATGGCAAACCTTTCGTCTTACCATCTGTC 300
consensus_8046#1 ------------------------------------------------------------
consensus_8046#0 AAAGAGGCTGAATCACTTTTGTTGGCGAAAAATTTGAATAAAGAATATGCTCCAATCAGT 360
consensus_8046#1 ------------------------------------------------------------
consensus_8046#0 GGTATCCCACAATTTTGCGATCTGTCCATTAAGCTTGCACTTACTGATCAATCTTCACGA 420
consensus_8046#1 ------------------------------------------------------------
consensus_8046#0 ATAAAAAATCGCTGTAACGCTACAACTCAGACAATATCTGGTACTGGAGCCCTTAGAGTC 480
consensus_8046#1 ------------------------------------------------------------
consensus_8046#0 GGTGGAGCTTTTATCAATGAATTTGCAGAACAAAAACATATATGGATGCCAACACCTACT 540
consensus_8046#1 ------------------------------------------------------------
consensus_8046#0 TGGGGCAACCATAAACCTATTTTCACACATAGTGGACTAAATGTACACCAATATCGTTAT 600
consensus_8046#1 ------------------------------------------------------------
consensus_8046#0 TACAATAGTAATACTTGTGGTCTCGATATAGATGGTTGTTTATCTGATTTATCAAAAATT 660
consensus_8046#1 ------------------------------------------------------------
consensus_8046#0 CCCAAAGGACATTTCGTTTTACTTCATGCATGTGCGCATAATCCTACTGGAGTAGATCCA 720
consensus_8046#1 --------------------------------TGCGCATAATCCCACTGGAGTAGATCCA 28
************ ***************
consensus_8046#0 TCATTTGATCAATGGAAAAAAATTGGAGAGATTTTGAAGTCACGTGATTTAATCCCATTT 780
consensus_8046#1 TCATTTGATCAATGGA--------------------------CGTGATTTAATCCCATTT 62
**************** ******************
consensus_8046#0 TTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATA 840
consensus_8046#1 TTCGACTGTGCTTATCAAGGATTTGCCTCCGGTGATATTGACAATGATGCAAAAGCAATA 122
************************************************************
consensus_8046#0 CGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAAAGTTTTGCTAAG 900
consensus_8046#1 CGTTATTTTACCGATGAATTAAATTTCCCCACCGTATTACTTACACAANNNNNNNNNNNN 182
************************************************
consensus_8046#0 AACATGGGATTATATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGAT 960
consensus_8046#1 NNNNNNNNNNNN-ATGGTGAACGTGTTGGTGCTTTTACTTTACTTTGTTCATCTTCTGAT 241
***********************************************
consensus_8046#0 GAAGCTGAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCA 1020
consensus_8046#1 GAAGCTAAACGTTGTTTGTCACAAATTAAGATTATTATTCGACCAATGTATAGTAATCCA 301
****** *****************************************************
consensus_8046#0 CCGATTCATGGCGCACGTATTGCAACGGAAATTGATGTCTAATCCTGATTTAACGTCAAA 1080
consensus_8046#1 CCGATTCATGGCGCACGTATTGCAANNNNNNNNNNNNNNNNNNNNN-ATTTACGTCAAAA 360
************************* ***** ***
consensus_8046#0 GTGGCTCATTGATTTGAAA-CTATGGCTGATCGTATTATTACA-TGCGTCAAAGTTTAAG 1138
consensus_8046#1 GTGGCTCATTGATTTGAAAACTATGGCTGATCGTATTATTACAATGCGTCAAAGTTTAAG 420
******************* *********************** ****************
consensus_8046#0 AAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGG 1198
consensus_8046#1 AAATAGTTTAATCAAAGAAGGATCTCATCATGATTGGTCACATATCACTAATCAAATTGG 480
************************************************************
consensus_8046#0 AATGTTCTGCTATTCTGGGCTTAATCCATCACAGGTTGAAAAGCTGACTAGTGAATATTC 1258
consensus_8046#1 AATGTTCTGCTATTCTGGGCTTAATCCATCNNNNGTTGAAAAGCTGACTAGTGAATATTC 540
****************************** **************************
consensus_8046#0 TATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGA 1318
consensus_8046#1 TATTTATTTAACTAAAGATGGACGTATTAGTATTGCTGGCTTATCATCTAAAAATGTCGA 600
************************************************************
consensus_8046#0 CTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGTGTTTCTTTTTTTATT 1378
consensus_8046#1 CTACTTAGCTCATGCTATACACCAAGTTACTAAATAATAAAAAGGGTTTCTTTNTTTATT 660
******************************************** ******** ******
consensus_8046#0 ATCTGTTTGTTAATTTATACCCAATATATATACAAATATATTATTTA 1425
consensus_8046#1 ATCTGGTTGGTT----------------------------------- 672
***** *** *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||