These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 814 fasta sequence [AATTTGACTAACCATTCGTTCAAAATCAGCATAGTGATTCATCATAATTCTTTTTGTTGGAAGTGTTCAGTTATCCAAATTATGTCTTATAATCCTTATCTTTTCACTTAATTTGACGTATTTTTAAATATTGTGCGTTTTTCTATTAGGAATCCAGCTTCCAAGGTACATCAAATAAAACCGTCCCGAATTTCCGAGGTCCACTTCATCCCGGAGATCCAGCGGATGAATCTACTCCCAATACTCCTAGCGCGACATCATCATTGACATCTGACACACGAACCAATCTATCAGTTTATCAGGAATACTTTGAACGACCATTTTTAACTGAAACTGAACGATATTACCGATTGGAAAGTGCTCAATTTTTGCAGTCAAACACAGTTCCTGAATACCTTCAAAAAGTGGAAACACGATTAAATGAAGAACGTATTCGTGTTCAAACTTATCTACATATAAGTACACTTCCCAAATTAATTAGATCTTGTGAACATTATTTAATTGGTGAACATATTGATCGGTTAACATCTGTCTTCTCGGATCTTTTCAATGAAGATAGAGAGGAAGATATATGGCGAATGTATCGCTTAGTTGGTCATTTTCCTAGTGGAATACGTGTTCTTGTCTCTGTCATGGAAGATCATGTTGCTGATAAAGGATGGGAAGCTATCCGTCAAGTAGCTGAAGCCGCTTTAAATGATCCCAAATTGTATATTGATACAATATTAAAAGTTCATCAAAAACATTATAATCTTGTATTATCCGCTTTTGCTTGGGATCCTGCATTTTCACGTGCCTTAGACAAGGATGCGAA] [+] EMBL CD155794 [AATTTGACTAACCATTCGTTCAAAATCAGCATAGTGATTCATCATAATTCTTTTTGTTGGAAGTGTTCAGTTATCCAAATTATGTCTTATAATCCTTATCTTTTCACTTAATTTGACGTATTTTTAAATATTGTGCGTTTTTCTATTAGGAATCCAGCTTCCAAGGTACATCAAATAAAACCGTCCCGAATTTCCGAGGTCCACTTCATCCCGGAGATCCAGCGGATGAATCT ] [+] EMBL AI975971 [ ATCAAATAAAACCGCCCCGAATTTCCGAGGTCCACTTCATCCCGGAGATCCAGCGGATGAATCTACTCCCAATACTCCTAGCGCGACATCATCATTGACATCTGACACACGAACCAATCTATCAGTTTATCAGGAATACTTTGAACGACCATTTTTAACTGAAACTGAACGATATTACCGATTGGAAAGTGCTCAATTTTTGCAGTCAAACACAGTTCCTGAATACCTTCAAAAAGTGGAAACACGATTAAATGAAGAACGTATTCGTGTTCAAACTTATCTACATATAAGTACACTTCCCAAATTAATTAGATCTTGTGAACATTATTTAATTGGTGAACATATTGATCGGTTAACATCTGTCTTCTCGGATCTTTTCAATGAAGATAGAGAGGAAGATATATGGCGAATGTATCGCTTAGTTGGTCATTTTCCTAGTGGAATACGTGTTCTTGTCTCTGACATGGAAGATCATGTTGCTGATAAAGGATGGGAAGCTATCCGTCAAGTAGCTGAAGCCGCTTTAAATGA ] [+] EMBL CD192208 [ ATCTGACACACGAACCAATCTATCAGTTTATCAGGAATACTTTGAACGACCATTTTTAACTGAAACTGAACGATATTACCGATTGGAAAGTGCTCAATTTTTGCAGTCAAACACAGTTCCTGAATACCTTCAAAAAGTGGAAACACGATTAAATGAAGAACGTATTCGTGTTCAAACTTATCTACATATAAGTACACTTCCCAAATTAATTAGATCTTGTGAACATTATTTAATTGGTGAACATATTGATCGGTTAACATCTGTCTTCTCTGATCTTTTCAATGAAGATAGAGAGGAAGATATATGGCGAATGTATCGCTTAGTTGGTCATTTTCCTAGTGGAATACGTGTTCTTGTCTCTGTCATGGAAGATCATGTTGCTGATAAAGGATGGGAAGCTATCCGTCAAGTAGCTGAAGCCGCTTTAAATGATCCCAAATTGTATATTGATACAATATTAAAAGTTCATCANAAACATTATAATCTTGTATTATCCGCTTTTGCTTGGGATCCTGCATTTTCACGTGCCTTAGACAAGGATGCGAA] [+] EMBL CD192405 [ ATCTGACACACGAACCAATCTATCAGTTTATCAGGAATACTTTGAACGACCATTTTTAACTGAAACTGAACGATATTACCGATTGGAAAGTGCTCAATTTTTGCAGTCAAGCACAGTTCCTGAATACCTTCAAAAAGTGGAAACACGATTAAATGAAGAACGTATTCGTGTTCAAACTTATCTACATATAAGTACACTTCCCAAATTAATTAGATCTTGTGAACATTATTTAATTGGTGAACATATTGATCGGTTAACATCTGTCTTCTCGGATCTTTTCAATGAAGATAGAGAGGAAGATATATGGCGAATGTATCGCTTAGTTGGTCATTTTCCTAGTGGAATACGTGTTCTTATCTCTGTCATGGAAGATCATGTTGCTGATAAAGGATGGGAAGCTATCCGTCAAGTAGCTGAAGCCGCTTTAAATGATCCCAAATTGTATATTGATACAATATTAAAAGTTCATCAAAAACATTATAATCTTGTATTATCCGCTTTTGCTTGAGATCCTGCATTTTC ] [-] EMBL CD115574 [ TTTNTGCAGTCAAACACAGTTCNTGAATACCTTCAAAAAGTGGAAACACGATTAAATGAAGAACGTATTCGTGTTCAAACTTATCTACATATAAGTACACTTCCCAAATTAATTAGATCTTGTGAACATTATTTAATTGGTGAACATATTGATCGGTTAACATCTGTCTTCTCTGATCTTTTCAATGAAGATAGAGAGGAAGATATATGGCGAATGTATCGCTTAGTTGGTCATTTTCCTAGTGGAATACGTGTTCTTGTCTCTGTCATGGAAGATCATGTTGCTGATAAAGGATGGGAAGCTATCCGTCAAGTAGCTGAAGCCGCTTTAAATGATCCCAAATTGTATATTGATACAATATTAAAAGTTCATCAAAAACATTATAATCTTGTATTATCCGCTTTTGCTTGGGATCCTGCATTTTCACGTGCCTTAGACA ] consensusID : consensus_8051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence [TACTACATCCCCTAGCGAACCCTTGCCATATCTAATGAAACCTTTTAAATCTAATTTTCCCCCGAAACCTAGTGGTTCTACCGTAAAACCAAATAAGTCTGAAGTGGAATCCAGCTTCCAAGGTACATCAAATAAAACCGTCCCGAATTTCCGAGGTCCACTTCATCCCGGAGATCCAGCGGATGAATCTACTCCCAATACTCCTAGTGCGACATCATCATTGACATCTGANCACACGAACCATCTATCAGTTTATCAG] [+] EMBL CD191818 [TACTACATCCCCTAGCGAACCCTTGCCATATCTAATGAAACCTTTTAAATCTAATTTTCCCCCGAAACCTAGTGGTTCTACCGTAAAACCAAATAAGTCTGAAGTGGAATCCAGCTTCCAAGGTACATCAAATAAAACCGTCCCGAATTTCCGAGGTCCACTTCATCCCGGAGATCCAGCGGATGAATCTACTCCCAATACTCCTAGTGCGACATCATCATTGACATCTGANCACACGAACCATCTATCAGTTTATCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8051#0 AATTTGACTAACCATTCGTTCAAAATCAGCATAGTGATTCATCATAATTCTTTTTGTTGG 60 consensus_8051#1 --------------------------------------------TACTACATCCCCTAGC 16 ** * * * * * consensus_8051#0 AAGTGTTCAGTTATCCAAATTATGTCTTATAATCCTTATCTTTTCACTTAATTTGACGTA 120 consensus_8051#1 GAACCCTTGCCATATCTAATGAAACCTTTTAAATCTAATTTTCCCCCGAAACCTAGTGGT 76 * * * *** * *** *** ** ** ** * * ** * * consensus_8051#0 TTTTTA--AATATTGTGCGTTTTTCTATTAGGAATCCAGCTTCCAAGGTACATCAAATAA 178 consensus_8051#1 TCTACCGTAAAACCAAATAAGTCTGAAGT-GGAATCCAGCTTCCAAGGTACATCAAATAA 135 * * ** * * * * * ****************************** consensus_8051#0 AACCGTCCCGAATTTCCGAGGTCCACTTCATCCCGGAGATCCAGCGGATGAATCTACTCC 238 consensus_8051#1 AACCGTCCCGAATTTCCGAGGTCCACTTCATCCCGGAGATCCAGCGGATGAATCTACTCC 195 ************************************************************ consensus_8051#0 CAATACTCCTAGCGCGACATCATCATTGACATCTGAC-ACACGAACCAATCTATCAGTTT 297 consensus_8051#1 CAATACTCCTAGTGCGACATCATCATTGACATCTGANCACACGAACCA-TCTATCAGTTT 254 ************ *********************** ********** *********** consensus_8051#0 ATCAGGAATACTTTGAACGACCATTTTTAACTGAAACTGAACGATATTACCGATTGGAAA 357 consensus_8051#1 ATCAG------------------------------------------------------- 259 ***** consensus_8051#0 GTGCTCAATTTTTGCAGTCAAACACAGTTCCTGAATACCTTCAAAAAGTGGAAACACGAT 417 consensus_8051#1 ------------------------------------------------------------ consensus_8051#0 TAAATGAAGAACGTATTCGTGTTCAAACTTATCTACATATAAGTACACTTCCCAAATTAA 477 consensus_8051#1 ------------------------------------------------------------ consensus_8051#0 TTAGATCTTGTGAACATTATTTAATTGGTGAACATATTGATCGGTTAACATCTGTCTTCT 537 consensus_8051#1 ------------------------------------------------------------ consensus_8051#0 CGGATCTTTTCAATGAAGATAGAGAGGAAGATATATGGCGAATGTATCGCTTAGTTGGTC 597 consensus_8051#1 ------------------------------------------------------------ consensus_8051#0 ATTTTCCTAGTGGAATACGTGTTCTTGTCTCTGTCATGGAAGATCATGTTGCTGATAAAG 657 consensus_8051#1 ------------------------------------------------------------ consensus_8051#0 GATGGGAAGCTATCCGTCAAGTAGCTGAAGCCGCTTTAAATGATCCCAAATTGTATATTG 717 consensus_8051#1 ------------------------------------------------------------ consensus_8051#0 ATACAATATTAAAAGTTCATCAAAAACATTATAATCTTGTATTATCCGCTTTTGCTTGGG 777 consensus_8051#1 ------------------------------------------------------------ consensus_8051#0 ATCCTGCATTTTCACGTGCCTTAGACAAGGATGCGAA 814 consensus_8051#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||