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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8052 cluster # 8052       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8052#0 length = 591 sequences # 5  
consensus_8052#1 length = 218 sequences # 1  

consensusID : consensus_8052#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 591
fasta sequence
                              [ACAGGAGGAGCATAGGCCGCTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTTTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTATGTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCCTGATTTTTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGTCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACACTCATCTATTCCTCTGTCCTTGAGTTTCAGTGATCGGCTTGCCTTCCTCGTCATTGACTGGTCTCTGTGGTTGACTATATTTCCCTGCTAGATTCCTCGTTATATCGTACAGTTGTCTGATATTTCCTTCTGCCACAGCTTCTTCCGCCGTCGCTGCTAGTTCTCCCATGTATTCCTCCGGT]

[+] EMBL CD086007             [ACAGGAGGAGCATAGGCCGCTCATTGGTATTCTCTATCTAACTCTGTCCTGGACAATGCTTTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTATGTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCCTGATTTTTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGCCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACACTCATCTATTCCTCTGTCCTTGAGTTTCAGTGATCGGCTTGCCTTCCTCGTCATTGACTGGTCTCTGTGGTTGACTATATTTCCCTGCTAGATTCCTCGTTATATCGTACAGTTGTCTGATATTTCCTTCTGCCACAGCTTCTTCCGCCGTCGCTGCTAGTTC                   ]
[-] EMBL CD086236             [                   CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTTTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTCCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTATGTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCCTGATTTTTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGTCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACACTCATCTATTCCTCTGTCCTTGAGTTTCAGTGATCGGCTTGCCTTCCTCGTCATTGACTGGTCTCTGTGGTTGACTATATTTCCCTGCTAGATTCCTCGTTATATCGTACAGTTGTCTGATATTTCCTTCTGCCACAGCTTCTTCCGCCGTCGCTGCTAGTTCTCCCATGTATTCCTCCGGT]
[-] EMBL CD086224             [                   CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTTTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTATGTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCATGATTTTTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGTCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTGCA                                                                                                                                                                                      ]
[-] EMBL CD086001             [                   CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTTTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTATGTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCCTGATTTTTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGTCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACA                                                                                                                                                                                      ]
[-] EMBL CD092576             [                                                                                                                                                                                                                                                                                                                                           GAAGGTCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACACTCATATATTCCTCTGTCCTTGAGTTTCAGTGATCGGCTTGCCTTCATCGTCATTGACTGGTCTCTGTGGTTGACTATATTTCCCTGCTAGATTCCTCGTTATATCGCACAGTTGTGTGATATTTCCTTCTGCCACAG                                            ]


>consensus_8052#0 ACAGGAGGAGCATAGGCCGCTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCT TTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGG TATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTT CTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTAT GTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCCTGATTT TTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGTCTGTAGATTTTGCTCCAATATCC AGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACACTCATCTATTC CTCTGTCCTTGAGTTTCAGTGATCGGCTTGCCTTCCTCGTCATTGACTGGTCTCTGTGGT TGACTATATTTCCCTGCTAGATTCCTCGTTATATCGTACAGTTGTCTGATATTTCCTTCT GCCACAGCTTCTTCCGCCGTCGCTGCTAGTTCTCCCATGTATTCCTCCGGT



consensusID : consensus_8052#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 218
fasta sequence
                              [CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTCTCAGGCTCTTTCTAGACCCTATTTATCCTTCTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAAGTTCAATGTCGGCCAG]

[-] EMBL CD086143             [CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTCTCAGGCTCTTTCTAGACCCTATTTATCCTTCTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAAGTTCAATGTCGGCCAG]


>consensus_8052#1 CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTCTCAGGCTCTTTCTAGACC CTATTTATCCTTCTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCT CTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATC CACTCCCGGATTCCTTTCTTAAGTTCAATGTCGGCCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8052#0      ACAGGAGGAGCATAGGCCGCTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCT 60
consensus_8052#1      -------------------CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCT 41
                                         *****************************************

consensus_8052#0      TTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGG 120
consensus_8052#1      CTCAGGCTCTTTCTAGACCCTATTTATCCTTCTTATATCTGCGTCCAATCCTCAAAACGG 101
                       ****************************** ****************************

consensus_8052#0      TATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTT 180
consensus_8052#1      TATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTT 161
                      ************************************************************

consensus_8052#0      CTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTAT 240
consensus_8052#1      CTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAAGTTCAATGTCGGCCAG--- 218
                      ***************************************** ***    ** ** **   

consensus_8052#0      GTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCCTGATTT 300
consensus_8052#1      ------------------------------------------------------------
                                                                                  

consensus_8052#0      TTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGTCTGTAGATTTTGCTCCAATATCC 360
consensus_8052#1      ------------------------------------------------------------
                                                                                  

consensus_8052#0      AGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACACTCATCTATTC 420
consensus_8052#1      ------------------------------------------------------------
                                                                                  

consensus_8052#0      CTCTGTCCTTGAGTTTCAGTGATCGGCTTGCCTTCCTCGTCATTGACTGGTCTCTGTGGT 480
consensus_8052#1      ------------------------------------------------------------
                                                                                  

consensus_8052#0      TGACTATATTTCCCTGCTAGATTCCTCGTTATATCGTACAGTTGTCTGATATTTCCTTCT 540
consensus_8052#1      ------------------------------------------------------------
                                                                                  

consensus_8052#0      GCCACAGCTTCTTCCGCCGTCGCTGCTAGTTCTCCCATGTATTCCTCCGGT 591
consensus_8052#1      ---------------------------------------------------
                                                                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)