cluster # 8053

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Schistosoma mansoni
cluster # 8053 cluster # 8053 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8053#0 length = 829 sequences # 5

consensus_8053#1 length = 193 sequences # 1

consensusID : consensus_8053#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 829
fasta sequence

                              [GAGNCCTATTAATTCGGCACCAGGAGAAGGTGAATTTTCAAAGTTAAACGATGATGACATTTACATTCACCGATGTGTTCACAGAAACCAGTCAGAATCACTCTCATTGCATATCTACTAAATTAAGTAGTTCACTTGTTCTCAGTGGTCTCATCCTAACATTGATCGGTGTAGTCCTTGGATTATTAATAATATTCATTAGAAAACTACACTCTACATCTATACTGAACATTATCTTCATCGTTATAACCGTAATAATTTTGTTTGTTGGTGTTACGTTACTAATGTCACCTGCACAACGGTATGAAAAAATGATTTCTGCACCTTTGGCTGGCATGTTCTGCGTCTTAGCCATTTTTTTGGGCTTAAATCTACAACTTTCGAAAAGAAAATGGAAAATAATCTTGTTCACGATGTCTTGTGTATTTGCAGTAGCTGGATTCATTCTTTATGTTCTAGGGTTGACACTGCATATGCATGTTTTACAAGGTTCAGCCTGGATTTGTTGTTGCTGCATAATGTTTATTGTGAGTCTGTTCACAGCATACTATCTGAATGTGCACGACAAACAAGGAGACTGCTCTATATCATACTTATTTTTCGTATGGATTTATGAATGTATTGCATTTGTCATCATATTACAATTTATTTTAAATTCATTCATCGATTGTCATTCGAACGGTAGTAATCCCAACAT-GACAATGATTGAGCAGGATTAATGGATGAATTTCCATTGAGTATCTATATCAGTTTACAAATATTCACAGATATTCATTTGGAGTATTCTGAAGATTTTTGTTAACTGCATTGTTATTGATAATAAATGTTC]

[+] EMBL CD081804             [GAGNCCTATTAATTCGGCACCAGGAGAAGGTGAATTTTCAAAGTTAAACGATGATGACATTTACATTCACCGATGTGTTCACAGAAACCAGTCAGAATCACTCTCATTGCATATCTACTAAATTAAGTAGTTCACTTGTTCTCAGTGGTCTCATCCTAACATTGATCGGTGTAGTCCTTGGATTATTAATAATATTCATTAGAAAACTACACTCTACATCTATACTGAACATTATCTTCATCGTTATAACCGTAATAATTTTGTTTGTTGGTGTTACGTTACTAATGTCACCTGCACAACGGTATGAAAAAATGATTTCTGCACCTTTGGCTGGCATGTTCTGCGTCTTAGCCATTTTTTTGGGCTTAAATCTACAACTTTCGAAAAGAAAATGGAAAATAATCTTGTTCACGATGTCTTGTGTATTTGCAGTAGCTGGATTCATTCTTTATGTTCTAGGGTTGACACTGCATATGCATGTTTTACAAGGTTCAGCCTGGATTTGTTGTTGCTGCATAATGTTTATTGTGAGTCTGTTCACAGCATACTATCTGAATGTGCACGACAAACAAGGAGACTGCTCTATATCATACTTATTTTTCGTATGGATTTATGAATGTATTGCATTTGTCATCATATTACAATTTATTTTAAATTCATTCATCGATTGTCATTCGAACGGTAGTAATCCCAACAT GACAATGATTGAGCAGGATTAATGGATGAATTTCCATTGAGTATCTATATCAGTTTACAAATATTCACAGATATTCATTTGGAGTATTCTGAAGATTNTTGTTAACTGCATTGNTATTGATAATAA      ]
[+] EMBL CD079266             [                        AGAAGGTGAATTTTCAAAGTTAAACGATGATGACATTTACATTCACCGATGTGTTCACAGAAACCAGTCAGAATCACTCTCATTGCATATCTACTAAATTAAGTAGTTCACTTGTTCTCAGTGGTCTCATCCTAACATTGATCGGTGTAGTCCTTGGATTATTAATAATATTCATTAGAAAACTACACTCTACATCTATACTGAACATTATCTTCATCGTTATAACCGTAATAATTTTGTTTGTTGGTGTTACGTTACTAATGTCACCTGCACAACGGTATGAAAAAATGATTTCTGCACCTTTGGCTGGCATGTTCTGCGTCTTAGCCATTTTTTTGGGCTTAAATCTACAACTTTCGAAAAGAAAATGGAAAATAATCTTGTTCACGATGTCTTGTGTATTTGCAGTAGCTGGATTCATTCTTTATGTTCTAGGGTTGACACTGCATATGCATGTTTTACAAGGTTCAGCCTGGATTTGTTGTTGCTGCATAATGTTTATTGTGAGTCTGTTCACAGCATACTATCTGAATGTGCACGACANACAAGGAGACTGCTCTATATCATACTTATTTTTCGTATGGATTTATGAATGTATTGCATTTGTCATCATATTACAATTTATTNTAAATTCATTCATCGATTGTCATTCG                                                                                                                                                         ]
[+] EMBL CD079140             [                        AGAAGGTGAATTTTCAAAGTTAAACGATGATGACATTTACATTCACCGATGTGTTCACAGAAACCAGTCAGAATCACTCTCATTGCATATCTACTAAATTAAGTAGTTCACTTGTTCTCAGTGGTCTCATCCTAACATTGATCGGTGTAGTCCTTGGATTATTAATAATATTCATTAGAAAACTACACTCTACATCTATACTGAACATTATCTTCATCGTTATAACCGTAATAATTTTGTTTGTTGGTGTTACGTTACTAATGTCACCTGCACAACGGTATGAAAAAATGATTTCTGCACCTTTGGCTGGCATGTTCTGCGTCTTAGCCATTTTTTTGGGCTTAAATCTACAACTTTCGAAAAGAAAATGGAAAATAATCTTGTTCACGATGTCTTGTGTATTTGCAGTAGCTGGATTCATTCTTTATGTTCTAGGGTTGACACTGCATATGCATGTTTTACAAGGTTCAGCCTGGATTTGTTGNTGCTGCATAATGTTTATTGTGAGTCTGTTCACAGCATACTATCTGAATGTGCACGACAAACAAGGAGACTGCTCTATATCATACTTATTTTTCGTATGGATTTATGAATGTATTGCATTTGTCATCATATTACNNATTATTTTANATTCATTCATCGA                                                                                                                                                                   ]
[-] EMBL CD075535             [                         GAAGGTGAATTTTCAAAGTTAAACGATGATGACATTTACATTCACCGATGTGTTCACAGAAACCAGTCAGAATCACTCTCATTGCATATCTACTAAATTAAGTAGTTCACTTGTTCTCAGTGGTCTCATCCTAACATTGATCGGTGTAGTCCTTGGATTATTAATAATATTCATTAGAAAACTACACTCTACATCTATACTGAACATTATCTTCATCGTTATAACCGTAATAATTTTGTTTGTTGGTGTTACGTTACTAATGTCACCTGCACAACGGTATGAAAAAATGATTTCTGCACCTTTGGCTGGCATGTTCTGCGTCTTAGCCATTTTTTTGGGCTTAAATCTACAACTTTCGAAAAGAAAATGGAAAATAATCTTGTTCACGATGTCTTGTGTATTTGCAGTAGCTGGATTCATTCTTTATGTTCTAGGGTTGACACTGCATATGCATGTTTTACAAGGTTCAGCCTGGATTTGTTGTTGCTGCATAATGTTTATTGTGAGTCTGTTCACAGCATACTATCTGAATGTGCACGACAAACAAGGAGACTGCTCTATATCATACTTATTTTTCGTATGGATTTATGAATGTATTGCATTTGTCATCATATTACAATTTATTTTAAATTCATTCATCGATTGTCATTCGAACGGTAGTAATCCCAACAT GACAATGATTGAGCAGGATTAATGGATGAATTTCCATTGGGTATCTATATCAGTTTACAAATAATCACAGATATTCATTTGGAGTATTCTGAAGATTTTTGTTAACTGCATTGTGATTTATAA         ]
[-] EMBL SMAA28895            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              agTCCCAACATGGACAATGATTAAGCAGGATTAATGGATGAATTTCCATTGAGTATCTATATCAGTTTACAAATATTCACAGATATTCATTTGGAGTATTCTGAAGATTTTTGTTAACTGCATTGTTATTGATAATAAATGTTC]




>consensus_8053#0
GAGNCCTATTAATTCGGCACCAGGAGAAGGTGAATTTTCAAAGTTAAACGATGATGACAT
TTACATTCACCGATGTGTTCACAGAAACCAGTCAGAATCACTCTCATTGCATATCTACTA
AATTAAGTAGTTCACTTGTTCTCAGTGGTCTCATCCTAACATTGATCGGTGTAGTCCTTG
GATTATTAATAATATTCATTAGAAAACTACACTCTACATCTATACTGAACATTATCTTCA
TCGTTATAACCGTAATAATTTTGTTTGTTGGTGTTACGTTACTAATGTCACCTGCACAAC
GGTATGAAAAAATGATTTCTGCACCTTTGGCTGGCATGTTCTGCGTCTTAGCCATTTTTT
TGGGCTTAAATCTACAACTTTCGAAAAGAAAATGGAAAATAATCTTGTTCACGATGTCTT
GTGTATTTGCAGTAGCTGGATTCATTCTTTATGTTCTAGGGTTGACACTGCATATGCATG
TTTTACAAGGTTCAGCCTGGATTTGTTGTTGCTGCATAATGTTTATTGTGAGTCTGTTCA
CAGCATACTATCTGAATGTGCACGACAAACAAGGAGACTGCTCTATATCATACTTATTTT
TCGTATGGATTTATGAATGTATTGCATTTGTCATCATATTACAATTTATTTTAAATTCAT
TCATCGATTGTCATTCGAACGGTAGTAATCCCAACATGACAATGATTGAGCAGGATTAAT
GGATGAATTTCCATTGAGTATCTATATCAGTTTACAAATATTCACAGATATTCATTTGGA
GTATTCTGAAGATTTTTGTTAACTGCATTGTTATTGATAATAAATGTTC

consensusID : consensus_8053#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 193
fasta sequence

                              [CTCGCGGCCAAGATTCGGCACGAGGTTTATTTTGAGTGAATGTTTATCGAACAAAGGAATAATTCTGTTTGAAGTTGGAATTACTGATTGTAGAAGGTGAATTTTCAAAGTTAAACGATGATGACATTTACATTCACCGATGTGTTCACAGAAACCAGTCAGAATCACTCTCATTGCATATCTACTAAATAAA]

[+] EMBL CD077530             [CTCGCGGCCAAGATTCGGCACGAGGTTTATTTTGAGTGAATGTTTATCGAACAAAGGAATAATTCTGTTTGAAGTTGGAATTACTGATTGTAGAAGGTGAATTTTCAAAGTTAAACGATGATGACATTTACATTCACCGATGTGTTCACAGAAACCAGTCAGAATCACTCTCATTGCATATCTACTAAATAAA]




>consensus_8053#1
CTCGCGGCCAAGATTCGGCACGAGGTTTATTTTGAGTGAATGTTTATCGAACAAAGGAAT
AATTCTGTTTGAAGTTGGAATTACTGATTGTAGAAGGTGAATTTTCAAAGTTAAACGATG
ATGACATTTACATTCACCGATGTGTTCACAGAAACCAGTCAGAATCACTCTCATTGCATA
TCTACTAAATAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8053#0      -----------------------------------------------------------G 1
consensus_8053#1      CTCGCGGCCAAGATTCGGCACGAGGTTTATTTTGAGTGAATGTTTATCGAACAAAGGAAT 60
                                                                                  

consensus_8053#0      AGNCCTATT--AATTCGGCACCA------GGAGAAGGTGAATTTTCAAAGTTAAACGATG 53
consensus_8053#1      AATTCTGTTTGAAGTTGGAATTACTGATTGTAGAAGGTGAATTTTCAAAGTTAAACGATG 120
                      *   ** **  ** * ** *  *      * *****************************

consensus_8053#0      ATGACATTTACATTCACCGATGTGTTCACAGAAACCAGTCAGAATCACTCTCATTGCATA 113
consensus_8053#1      ATGACATTTACATTCACCGATGTGTTCACAGAAACCAGTCAGAATCACTCTCATTGCATA 180
                      ************************************************************

consensus_8053#0      TCTACTAAATTAAGTAGTTCACTTGTTCTCAGTGGTCTCATCCTAACATTGATCGGTGTA 173
consensus_8053#1      TCTACTAAATAAA----------------------------------------------- 193
                      ********** **                                               

consensus_8053#0      GTCCTTGGATTATTAATAATATTCATTAGAAAACTACACTCTACATCTATACTGAACATT 233
consensus_8053#1      ------------------------------------------------------------
                                                                                  

consensus_8053#0      ATCTTCATCGTTATAACCGTAATAATTTTGTTTGTTGGTGTTACGTTACTAATGTCACCT 293
consensus_8053#1      ------------------------------------------------------------
                                                                                  

consensus_8053#0      GCACAACGGTATGAAAAAATGATTTCTGCACCTTTGGCTGGCATGTTCTGCGTCTTAGCC 353
consensus_8053#1      ------------------------------------------------------------
                                                                                  

consensus_8053#0      ATTTTTTTGGGCTTAAATCTACAACTTTCGAAAAGAAAATGGAAAATAATCTTGTTCACG 413
consensus_8053#1      ------------------------------------------------------------
                                                                                  

consensus_8053#0      ATGTCTTGTGTATTTGCAGTAGCTGGATTCATTCTTTATGTTCTAGGGTTGACACTGCAT 473
consensus_8053#1      ------------------------------------------------------------
                                                                                  

consensus_8053#0      ATGCATGTTTTACAAGGTTCAGCCTGGATTTGTTGTTGCTGCATAATGTTTATTGTGAGT 533
consensus_8053#1      ------------------------------------------------------------
                                                                                  

consensus_8053#0      CTGTTCACAGCATACTATCTGAATGTGCACGACAAACAAGGAGACTGCTCTATATCATAC 593
consensus_8053#1      ------------------------------------------------------------
                                                                                  

consensus_8053#0      TTATTTTTCGTATGGATTTATGAATGTATTGCATTTGTCATCATATTACAATTTATTTTA 653
consensus_8053#1      ------------------------------------------------------------
                                                                                  

consensus_8053#0      AATTCATTCATCGATTGTCATTCGAACGGTAGTAATCCCAACATGACAATGATTGAGCAG 713
consensus_8053#1      ------------------------------------------------------------
                                                                                  

consensus_8053#0      GATTAATGGATGAATTTCCATTGAGTATCTATATCAGTTTACAAATATTCACAGATATTC 773
consensus_8053#1      ------------------------------------------------------------
                                                                                  

consensus_8053#0      ATTTGGAGTATTCTGAAGATTTTTGTTAACTGCATTGTTATTGATAATAAATGTTC 829
consensus_8053#1      --------------------------------------------------------