These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 854 fasta sequence [TCGGAGGCCAATAATTCGGCACGAGGCAAACGAGTAAATGTTATCAGTTGTCTTGGTTTAGGGACGCGTTCCTCCATCCATCCTTCGTTCCTCACTCTGGGTGTCAATTTTGACGAAGATCGAATATGGGGCTCCAATGAGAAATGTTTAGCGTTTTTGTCATCATGTGAAGAACTCATACGTTCATTCATTCCAAAGTCACCCATCGAAGGAATAAATAGTCACACTGGAGCAAATGATGCTCTGTTTTGTCGGAGTTTCGGACCAGTTTTGCAAGCTCATGTAAACTTTCTTCAGCTTTGTCGTCCATTATCTGTTACGATATATAATGCATATCAGTATCTGAAGCAGACGCTTACTCGCCTAGATTCCGTGGAAGATTGGGATGAGTGTAGAGACAGCTTTTTATCAGCCATTGTCGAATTTAGGCGTGGTTCAATTTATTTGGCAGGAGATGAGATTGTAGATCGTACAGTTAATTTGATTCGTCCTGGTGAATGTGTCTGTATATTTGGATATTCATCCTTGGTAGCCCGTGTGCTGGAACGTGCATGGAAATCTCCATGCAACACATCTGTCAATCAAGTTGATGCAAATGTTGATTTTTTAGCGAGCAAAATGAAAACATGTTTTGTAAACACTAAATCGGATCCATCAAATAAAAATACAAACAGAGTGTTTAGTGTTTTGGTTGTTGACTCTCGACCGAAATTTGAAGGTAGACAAATGCTAACCAGATTGTTAAAAGCAGGAATACCATGTGAATATACACATATNCGGTGCATTGCCAAGTGTCGCAAATAAGATATCTCTAGTTATTCTGGGCGCCCATGCTCTTCTTAGCAACGGGTACG] [+] EMBL CD081608 [TCGGAGGCCAATAATTCGGCACGAGGCAAACGAGTAAATGTTATCAGTTGTCTTGGTTTAGGGACGCGTTCCTCCATCCATCCTTCGTTCCTCACTCTGGGTGTCAATTTTGACGAAGATCGAATATGGGGCTCCAATGAGAAATGTTTAGCGTTTTTGTCATCATGTGAAGAACTCATACGTTCATTCATTCCAAAGTCACCCATCGAAGGAATAAATAGTCACACTGGAGCAAATGATGCTCTGTTTTGTCGGAGTTTCGGACCAGTTTTGCAAGCTCATGTAAACTTTCTTCAGCTTTGTCGTCCATTATCTGTTACGATATATAATGCATATCAGTATCTGAAGCAGACGCTTACTCGCCTAGATTCCGTGGAAGATTGGGATGAGTGTAGAGACAGCTTTTTATCAGCCATTGTCGAATTTAGGCGTGGTTCAATTTATTTGGCAGGAGATGAGATTGTAGATCGTACAGTTAATTTGATTCGTCCTGGTGAATGTGTCTGTATATTTGGATATTCATCCTTGGTAGCCCGTGTGCTGGAACGTGCATGGAAATCTCCATGCAACACATCTGTCAATCAAGTTGATGCAAATGTTGATTTTTTAGCGAGCAAAATGAAAACATGTTTTGTAAACACTAAATCGGATCCATCAAATAAAAATACAAACAGAGTGTTTAGTGTTTTGGTTGTTGACTCTCGACCGAAATTTGAAGGTAGACAAATGCTAACCAGATTGTTAAAAGCAGGAATACCATGTGAATATACACATATNCGGTGCATT ] [+] EMBL CD084044 [ GAAGCAGACGCTTACTCGCCTAGATTCCGTGGAAGATTGGGATGAGTGTAGAGACAGCTTTTTATCAGCCATTGTCGAATTTAGGCGTGGTTCAATTTATTTGGCAGGAGATGAGATTGTAGATCGTACAGTTAATTTGATTCGTCCTGGTGAATGTGTCTGTATATTTGGATATTCATCCTTGGTAGCCCGTGTGCTGGAACGTGCATGGAAATCTCCATGCAACACATCTGTCAATCAAGTTGATGCAAATGTTGATTTTTTAGCGAGCAAAATGAAAACATGTTTTGTAAACACTAAATCGGATCCATCAAATAAAAATACAAACAGAGTGTTTAGTGTTTTGGTTGTTGACTCTCGACCGAAATTTGAAGGTAGACAAATGCTAACCAGATTGTTAAAAGCAGGAATACCATGTGAATATA ] [+] EMBL CD137480 [ CAGCTTTTTATCAGCCATTGTCGAATTTAGGCGTGGTTCAATTTATTTGGCAGGAGATGAGATTGTAGATCGTACAGTTAATTTGATTCGTCCTGGTGAATGTGTCTGTATATTTGGATATTCATCCTTGGTAGCCCGTGTGCTGGAACGTGCATGGAGATCTCCATGCAACACATCTGTCAATCAAGTTGATGCAAATGTTGATTTTTTAGCGAGCAAAATGAAAACATGTTTTGTAAACACTAAATCGGATCCATCAAATAAAAATACAAACAGAGTGTTTAGTGTTTTGGTTGTTGGCTCTCGACCGAAATTTGAAGGTAGACAAATGCTAACCAGATTGTTAAAAGCAGGAATACCATGTGAATATACACATAT CGGTGCATTGCCAAGTGTCGCAAATAAGATATCTCTAGTTATTCTGGGCGCCCATGCTCTTCTTAGCAACGGGTACG] consensusID : consensus_8054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 752 fasta sequence [TTATGTGCGCTACTGAGTTGTTGCTGTCAATGAAGGACTCAGTAAGCAAAGAAATAATGCGAAATCCAAAGCTCAGCTTAAAGCTGAAAGAAGAGCTATTCAAGAAGCTCAGAGAGCTGCGAAAGCTGCTTCCAAAGGTACAGACAAGCCAAAAGTCACTCAAACACTAAATACCGTTCCTAGTAGTCTAAATGCACCAAATACTCAGCCGAATCAGGATACAGGTACGAATGAACAAAAGACCATTCCCTTTAAGGATCAGAAAGCATGTACAGATATAGTTCAAAGTCAAAATAACCGCCTCGATTTTTCGAGCCTCAAAATTGCCGAACTTCCGAAGTCCAGAATACAAGAGTCCTGTCGCGTTCACCTCTTCAAGCATCTTGATCAACCAGACAAACGAGTAAATGTTATCAGTTGTCTTGGTTTAGGGACGCGTTCCTCCATCCATCCTTCGTTCCTCACTCTGGGTGTCAATTTTGACGAAGATCGAATATGGGGCTCCAATGAGAAATGTTTAGCGTTTTTGTCATCATGTGAAGAACTCATACGTTCATTCATTCCAAAGTCACCCATCGAAGGAATAAATAGTCACACTGGAGCAAATGATGCTCTGTTTTGTCGGAGTTTCGGACCAGTTTTGCAAGCTCATGTAAACTTTCTTCAGCTTTGTCGTCCATTACCTGTTACGATATATAATGCATATCAGTATCTGAAGCAGACGCTTACTCGCCTAGATTCCGTGGAAGATT] [+] EMBL CD179001 [TTATGTGCGCTACTGAGTTGTTGCTGTCAATGAAGGACTCAGTAAGCAAAGAAATAATGCGAAATCCAAAGCTCAGCTTAAAGCTGAAAGAAGAGCTATTCAAGAAGCTCAGAGAGCTGCGAAAGCTGCTTCCAAAGGTACAGACAAGCCAAAAGTCACTCAAACACTAAATACCGTTCCTAGTAGTCTAAATGCACCAAATACTCAGCCGAATCAGGATACAGGTACGAATGAACAAAAGACCATTCCCTTTAAGGATCAGAAAGCATGTACAGATATAGTTCAAAGTCAAAATAACCGCCTCGATTTTTCGAGCCTCAAAATTGCCGAACTTCCGAAGTCCAGAATACAAGAGTCCTGTCGCGTTCACCTCTTCAAGCATCTTGATCAACCAGACAAACGAGTAAATGTTATCAGTTGTCTTGGTTTAGGG ] [-] EMBL CD156077 [ agCAAATACTCAGCCGAATCAGGATACAGGTACGAATGAACAAAAGACCATTCCCTTTAAGGATCAGAAAGCATGTACAGATATAGTTCAAAGTCAAAATAACCGCCTCGATTTTTCGAGCCTCAAAATTGCCGAACTTCCGAAGTCCAGAATACAAGAGTCCTGCCGCGTTCACCTCTTCAAGCATCTTGATCAACCAGACAAACGAGTAAATGTTATCAGTTGTCTTGGTTTAGGGACGCGTTCCTCCATCCATCCTTCGTTCCTCACTCTGGGTGTCAATTTTGACGAAGATCGAATATGGGGCTCCAATGAGAAATGTTTAGCGTTTTTGTCATCATGTGAAGAACTCATACGTTCATTCATTCCAAAGTCACCCATCGAAGGAATAAATAGTCACACTGGAGCAAATGATGCTCTGTTTTGTCGGAGTTTCGGACCAGTTTTGCAAGCTCATGTAAACTTTCTTCAGCTTTGTCGTCCATTACCTGTTACGATATATAATGCATATCAGTATCTGAAGCAGACGCTTACTCGCCTAGATTCCGTGGAAGATT] [+] EMBL CD063388 [ TTGCCGAACGTCCGAAGTCCAAAATACAAGAGTCCTGTCGCGTTCACCTCTTCAAGCATCTTGATCAACCAGACAAACGAGTAAATGTTATCAGTTGTCTTGGTTTAGGGACGCGTTCCTCCATCCATCCTTCGTTCCTCACTCTGGGTGTCAATTTTGACGAAAATCGAATATGGGGCTCCAATGAGAAATGTTTAGCGTTTTTGTCATCATGTGAAGAACTCATACGTTCATTCATTCCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8054#0 TCGGAGGCCAATAATTCGGCACGAGGCAAACGAGTAAATGTTATCAGTTGTCTTGGTTTA 60 consensus_8054#1 --------------TTATGTGCG---CTACTGAGTTGTTGCTGTCAATGAA--GGACTCA 41 ** * ** * * **** ** * *** * * * * consensus_8054#0 GGGACGCGTTCCTCCATCCATCCTTCGTTCCTCACTCTGGGTGTCAATTTTGACGAAGAT 120 consensus_8054#1 GTAAGCAAAGAAATAATGCGAAATCCAAAGCTCAGCTTA------AAGCTGAAAGAAGAG 95 * * ** * * * **** * ** * * ***** consensus_8054#0 CGAATATGGGGCTCCAATGAGAAATGTTTAGCGTTTTTGTCATCATGTGAAGAACTCATA 180 consensus_8054#1 CTATTCAAGAAGCTCA--GAGAGCTGCGAAAGCTGCTTCCAAAGGTACAGACAAGCCAAA 153 * * * * ** **** ** * * ** * * * ** ** * consensus_8054#0 CGTTCATTCATTCCAAAGTCACCCATCGAAGGAATAAATAGTCACACTGGAGCAAATGAT 240 consensus_8054#1 AGT-CACTCAAACACTAAATACCGTTCCTAG-------TAGTCTAAATGCACCAAAT--- 202 ** ** *** * * *** ** ** ***** * ** * ***** consensus_8054#0 GCTCTGTTTTGTCGGAGTTTCGGACCAGTTTTGCAAGCTCATGTAAACTTTCTTCAGCTT 300 consensus_8054#1 ACTCAGCCGAATCAGGATACAGGTACGAATGAACAAA---AGACCATTCCCTTTAAGGAT 259 *** * ** * * ** * * *** * * ** ** * consensus_8054#0 TGTCGTCCATTATCTGTTACGATATATAATGCATATCAGTATCTGAAGCAGACGCTTACT 360 consensus_8054#1 CAGAAAGCATGTACAGATATAGTTCAAAGTCAAAATAACCGCCTCGATT------TTTCG 313 *** * * ** * * * * * ** * ** * ** * consensus_8054#0 CGCCTAGATTCCGTGGAAGATTGGGATGAGTGTAGAGACAGCTTTTTATCAGCCATTGTC 420 consensus_8054#1 AGCCTCAAAATTGCCGAACTTCCGAA-GTCCAGAATACAAGAGTCCTGTCG--CGTTCAC 370 **** * * *** * * * * * ** * * ** * ** * consensus_8054#0 GAATTTAGGCGTGGTTCAATTTATTTGGCAGGAGATGAGATTGTAGATCGTACAGTTAAT 480 consensus_8054#1 CTCTTCAAGCAT--CTTGATCAACCAGACAAACGAGTAAATGTTAT------CAGTTGTC 422 ** * ** * * ** * * ** ** * ** ** ***** consensus_8054#0 TTGATTCGTCCTGGTGAATGTGTCTGTATATTTGGATATTCATCCTTGGTAGCCCGTGTG 540 consensus_8054#1 TTGGTTTAGGGACGCGTTCCTCCATCCATCCTTCGTTCCTCACTCTGGGTGTCAATTTTG 482 *** ** * * * * ** ** * * *** ** *** * * ** consensus_8054#0 CTGGAACGTGCATGGAAATCTCCATGCAACACATCTGTCAATCAAGTTGATGCAAATGTT 600 consensus_8054#1 ACGAAGATCGAATATGGGGCTCCA-ATGAGAAATGT----------TTAGCGTTTTTGTC 531 * * * ** ***** * * ** * ** * *** consensus_8054#0 GATTTTTTAGCGAGCAAAATGAAAACATGTTTTGTAAACACTAAATCGGATCCATCAAAT 660 consensus_8054#1 ATCATGTGAAGAACTCATACGTTCATTCATTCCAAAGTCACCCA-TCGAAGGAAT-AAAT 589 * * * * * * * * ** * *** * *** * ** **** consensus_8054#0 AAAAATACAAACAGAGTGTTTAGTGTTTTGGTTGTT--GACTCTCGACCGAAATTTGAAG 718 consensus_8054#1 AGTCACAC---TGGAGCAAATGATGCTCTGTTTTGTCGGAGTTTCGGACCAGTTTTG--- 643 * * ** *** * ** * ** ** * ** * *** * * **** consensus_8054#0 GTAGACAAATGCTAACCAGATTGTTAAAAGCAGGAATACCATGTGAATATACACATATNC 778 consensus_8054#1 -CAAGCTCATGTAAACT---TTCTTCAGCTTTGTCGTCCATTACCTGTTACGATATATAA 699 * * *** *** ** ** * * * * * * * **** consensus_8054#0 GGTGCATTGCCAAGTGTCGCAAATAAGATATC-TCTAGTTATTCTGGGCGCCCATGCTCT 837 consensus_8054#1 TGCATATCAGTATCTGAAGCAGACGCTTACTCGCCTAGATTCCGTGGAAGATT------- 752 * ** * ** *** * ** **** * *** * consensus_8054#0 TCTTAGCAACGGGTACG 854 consensus_8054#1 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||