|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 854 fasta sequence
[TCGGAGGCCAATAATTCGGCACGAGGCAAACGAGTAAATGTTATCAGTTGTCTTGGTTTAGGGACGCGTTCCTCCATCCATCCTTCGTTCCTCACTCTGGGTGTCAATTTTGACGAAGATCGAATATGGGGCTCCAATGAGAAATGTTTAGCGTTTTTGTCATCATGTGAAGAACTCATACGTTCATTCATTCCAAAGTCACCCATCGAAGGAATAAATAGTCACACTGGAGCAAATGATGCTCTGTTTTGTCGGAGTTTCGGACCAGTTTTGCAAGCTCATGTAAACTTTCTTCAGCTTTGTCGTCCATTATCTGTTACGATATATAATGCATATCAGTATCTGAAGCAGACGCTTACTCGCCTAGATTCCGTGGAAGATTGGGATGAGTGTAGAGACAGCTTTTTATCAGCCATTGTCGAATTTAGGCGTGGTTCAATTTATTTGGCAGGAGATGAGATTGTAGATCGTACAGTTAATTTGATTCGTCCTGGTGAATGTGTCTGTATATTTGGATATTCATCCTTGGTAGCCCGTGTGCTGGAACGTGCATGGAAATCTCCATGCAACACATCTGTCAATCAAGTTGATGCAAATGTTGATTTTTTAGCGAGCAAAATGAAAACATGTTTTGTAAACACTAAATCGGATCCATCAAATAAAAATACAAACAGAGTGTTTAGTGTTTTGGTTGTTGACTCTCGACCGAAATTTGAAGGTAGACAAATGCTAACCAGATTGTTAAAAGCAGGAATACCATGTGAATATACACATATNCGGTGCATTGCCAAGTGTCGCAAATAAGATATCTCTAGTTATTCTGGGCGCCCATGCTCTTCTTAGCAACGGGTACG]
[+] EMBL CD081608 [TCGGAGGCCAATAATTCGGCACGAGGCAAACGAGTAAATGTTATCAGTTGTCTTGGTTTAGGGACGCGTTCCTCCATCCATCCTTCGTTCCTCACTCTGGGTGTCAATTTTGACGAAGATCGAATATGGGGCTCCAATGAGAAATGTTTAGCGTTTTTGTCATCATGTGAAGAACTCATACGTTCATTCATTCCAAAGTCACCCATCGAAGGAATAAATAGTCACACTGGAGCAAATGATGCTCTGTTTTGTCGGAGTTTCGGACCAGTTTTGCAAGCTCATGTAAACTTTCTTCAGCTTTGTCGTCCATTATCTGTTACGATATATAATGCATATCAGTATCTGAAGCAGACGCTTACTCGCCTAGATTCCGTGGAAGATTGGGATGAGTGTAGAGACAGCTTTTTATCAGCCATTGTCGAATTTAGGCGTGGTTCAATTTATTTGGCAGGAGATGAGATTGTAGATCGTACAGTTAATTTGATTCGTCCTGGTGAATGTGTCTGTATATTTGGATATTCATCCTTGGTAGCCCGTGTGCTGGAACGTGCATGGAAATCTCCATGCAACACATCTGTCAATCAAGTTGATGCAAATGTTGATTTTTTAGCGAGCAAAATGAAAACATGTTTTGTAAACACTAAATCGGATCCATCAAATAAAAATACAAACAGAGTGTTTAGTGTTTTGGTTGTTGACTCTCGACCGAAATTTGAAGGTAGACAAATGCTAACCAGATTGTTAAAAGCAGGAATACCATGTGAATATACACATATNCGGTGCATT ]
[+] EMBL CD084044 [ GAAGCAGACGCTTACTCGCCTAGATTCCGTGGAAGATTGGGATGAGTGTAGAGACAGCTTTTTATCAGCCATTGTCGAATTTAGGCGTGGTTCAATTTATTTGGCAGGAGATGAGATTGTAGATCGTACAGTTAATTTGATTCGTCCTGGTGAATGTGTCTGTATATTTGGATATTCATCCTTGGTAGCCCGTGTGCTGGAACGTGCATGGAAATCTCCATGCAACACATCTGTCAATCAAGTTGATGCAAATGTTGATTTTTTAGCGAGCAAAATGAAAACATGTTTTGTAAACACTAAATCGGATCCATCAAATAAAAATACAAACAGAGTGTTTAGTGTTTTGGTTGTTGACTCTCGACCGAAATTTGAAGGTAGACAAATGCTAACCAGATTGTTAAAAGCAGGAATACCATGTGAATATA ]
[+] EMBL CD137480 [ CAGCTTTTTATCAGCCATTGTCGAATTTAGGCGTGGTTCAATTTATTTGGCAGGAGATGAGATTGTAGATCGTACAGTTAATTTGATTCGTCCTGGTGAATGTGTCTGTATATTTGGATATTCATCCTTGGTAGCCCGTGTGCTGGAACGTGCATGGAGATCTCCATGCAACACATCTGTCAATCAAGTTGATGCAAATGTTGATTTTTTAGCGAGCAAAATGAAAACATGTTTTGTAAACACTAAATCGGATCCATCAAATAAAAATACAAACAGAGTGTTTAGTGTTTTGGTTGTTGGCTCTCGACCGAAATTTGAAGGTAGACAAATGCTAACCAGATTGTTAAAAGCAGGAATACCATGTGAATATACACATAT CGGTGCATTGCCAAGTGTCGCAAATAAGATATCTCTAGTTATTCTGGGCGCCCATGCTCTTCTTAGCAACGGGTACG]
consensusID : consensus_8054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 752 fasta sequence
[TTATGTGCGCTACTGAGTTGTTGCTGTCAATGAAGGACTCAGTAAGCAAAGAAATAATGCGAAATCCAAAGCTCAGCTTAAAGCTGAAAGAAGAGCTATTCAAGAAGCTCAGAGAGCTGCGAAAGCTGCTTCCAAAGGTACAGACAAGCCAAAAGTCACTCAAACACTAAATACCGTTCCTAGTAGTCTAAATGCACCAAATACTCAGCCGAATCAGGATACAGGTACGAATGAACAAAAGACCATTCCCTTTAAGGATCAGAAAGCATGTACAGATATAGTTCAAAGTCAAAATAACCGCCTCGATTTTTCGAGCCTCAAAATTGCCGAACTTCCGAAGTCCAGAATACAAGAGTCCTGTCGCGTTCACCTCTTCAAGCATCTTGATCAACCAGACAAACGAGTAAATGTTATCAGTTGTCTTGGTTTAGGGACGCGTTCCTCCATCCATCCTTCGTTCCTCACTCTGGGTGTCAATTTTGACGAAGATCGAATATGGGGCTCCAATGAGAAATGTTTAGCGTTTTTGTCATCATGTGAAGAACTCATACGTTCATTCATTCCAAAGTCACCCATCGAAGGAATAAATAGTCACACTGGAGCAAATGATGCTCTGTTTTGTCGGAGTTTCGGACCAGTTTTGCAAGCTCATGTAAACTTTCTTCAGCTTTGTCGTCCATTACCTGTTACGATATATAATGCATATCAGTATCTGAAGCAGACGCTTACTCGCCTAGATTCCGTGGAAGATT]
[+] EMBL CD179001 [TTATGTGCGCTACTGAGTTGTTGCTGTCAATGAAGGACTCAGTAAGCAAAGAAATAATGCGAAATCCAAAGCTCAGCTTAAAGCTGAAAGAAGAGCTATTCAAGAAGCTCAGAGAGCTGCGAAAGCTGCTTCCAAAGGTACAGACAAGCCAAAAGTCACTCAAACACTAAATACCGTTCCTAGTAGTCTAAATGCACCAAATACTCAGCCGAATCAGGATACAGGTACGAATGAACAAAAGACCATTCCCTTTAAGGATCAGAAAGCATGTACAGATATAGTTCAAAGTCAAAATAACCGCCTCGATTTTTCGAGCCTCAAAATTGCCGAACTTCCGAAGTCCAGAATACAAGAGTCCTGTCGCGTTCACCTCTTCAAGCATCTTGATCAACCAGACAAACGAGTAAATGTTATCAGTTGTCTTGGTTTAGGG ]
[-] EMBL CD156077 [ agCAAATACTCAGCCGAATCAGGATACAGGTACGAATGAACAAAAGACCATTCCCTTTAAGGATCAGAAAGCATGTACAGATATAGTTCAAAGTCAAAATAACCGCCTCGATTTTTCGAGCCTCAAAATTGCCGAACTTCCGAAGTCCAGAATACAAGAGTCCTGCCGCGTTCACCTCTTCAAGCATCTTGATCAACCAGACAAACGAGTAAATGTTATCAGTTGTCTTGGTTTAGGGACGCGTTCCTCCATCCATCCTTCGTTCCTCACTCTGGGTGTCAATTTTGACGAAGATCGAATATGGGGCTCCAATGAGAAATGTTTAGCGTTTTTGTCATCATGTGAAGAACTCATACGTTCATTCATTCCAAAGTCACCCATCGAAGGAATAAATAGTCACACTGGAGCAAATGATGCTCTGTTTTGTCGGAGTTTCGGACCAGTTTTGCAAGCTCATGTAAACTTTCTTCAGCTTTGTCGTCCATTACCTGTTACGATATATAATGCATATCAGTATCTGAAGCAGACGCTTACTCGCCTAGATTCCGTGGAAGATT]
[+] EMBL CD063388 [ TTGCCGAACGTCCGAAGTCCAAAATACAAGAGTCCTGTCGCGTTCACCTCTTCAAGCATCTTGATCAACCAGACAAACGAGTAAATGTTATCAGTTGTCTTGGTTTAGGGACGCGTTCCTCCATCCATCCTTCGTTCCTCACTCTGGGTGTCAATTTTGACGAAAATCGAATATGGGGCTCCAATGAGAAATGTTTAGCGTTTTTGTCATCATGTGAAGAACTCATACGTTCATTCATTCCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8054#0 TCGGAGGCCAATAATTCGGCACGAGGCAAACGAGTAAATGTTATCAGTTGTCTTGGTTTA 60
consensus_8054#1 --------------TTATGTGCG---CTACTGAGTTGTTGCTGTCAATGAA--GGACTCA 41
** * ** * * **** ** * *** * * * *
consensus_8054#0 GGGACGCGTTCCTCCATCCATCCTTCGTTCCTCACTCTGGGTGTCAATTTTGACGAAGAT 120
consensus_8054#1 GTAAGCAAAGAAATAATGCGAAATCCAAAGCTCAGCTTA------AAGCTGAAAGAAGAG 95
* * ** * * * **** * ** * * *****
consensus_8054#0 CGAATATGGGGCTCCAATGAGAAATGTTTAGCGTTTTTGTCATCATGTGAAGAACTCATA 180
consensus_8054#1 CTATTCAAGAAGCTCA--GAGAGCTGCGAAAGCTGCTTCCAAAGGTACAGACAAGCCAAA 153
* * * * ** **** ** * * ** * * * ** ** *
consensus_8054#0 CGTTCATTCATTCCAAAGTCACCCATCGAAGGAATAAATAGTCACACTGGAGCAAATGAT 240
consensus_8054#1 AGT-CACTCAAACACTAAATACCGTTCCTAG-------TAGTCTAAATGCACCAAAT--- 202
** ** *** * * *** ** ** ***** * ** * *****
consensus_8054#0 GCTCTGTTTTGTCGGAGTTTCGGACCAGTTTTGCAAGCTCATGTAAACTTTCTTCAGCTT 300
consensus_8054#1 ACTCAGCCGAATCAGGATACAGGTACGAATGAACAAA---AGACCATTCCCTTTAAGGAT 259
*** * ** * * ** * * *** * * ** ** *
consensus_8054#0 TGTCGTCCATTATCTGTTACGATATATAATGCATATCAGTATCTGAAGCAGACGCTTACT 360
consensus_8054#1 CAGAAAGCATGTACAGATATAGTTCAAAGTCAAAATAACCGCCTCGATT------TTTCG 313
*** * * ** * * * * * ** * ** * ** *
consensus_8054#0 CGCCTAGATTCCGTGGAAGATTGGGATGAGTGTAGAGACAGCTTTTTATCAGCCATTGTC 420
consensus_8054#1 AGCCTCAAAATTGCCGAACTTCCGAA-GTCCAGAATACAAGAGTCCTGTCG--CGTTCAC 370
**** * * *** * * * * * ** * * ** * ** *
consensus_8054#0 GAATTTAGGCGTGGTTCAATTTATTTGGCAGGAGATGAGATTGTAGATCGTACAGTTAAT 480
consensus_8054#1 CTCTTCAAGCAT--CTTGATCAACCAGACAAACGAGTAAATGTTAT------CAGTTGTC 422
** * ** * * ** * * ** ** * ** ** *****
consensus_8054#0 TTGATTCGTCCTGGTGAATGTGTCTGTATATTTGGATATTCATCCTTGGTAGCCCGTGTG 540
consensus_8054#1 TTGGTTTAGGGACGCGTTCCTCCATCCATCCTTCGTTCCTCACTCTGGGTGTCAATTTTG 482
*** ** * * * * ** ** * * *** ** *** * * **
consensus_8054#0 CTGGAACGTGCATGGAAATCTCCATGCAACACATCTGTCAATCAAGTTGATGCAAATGTT 600
consensus_8054#1 ACGAAGATCGAATATGGGGCTCCA-ATGAGAAATGT----------TTAGCGTTTTTGTC 531
* * * ** ***** * * ** * ** * ***
consensus_8054#0 GATTTTTTAGCGAGCAAAATGAAAACATGTTTTGTAAACACTAAATCGGATCCATCAAAT 660
consensus_8054#1 ATCATGTGAAGAACTCATACGTTCATTCATTCCAAAGTCACCCA-TCGAAGGAAT-AAAT 589
* * * * * * * * ** * *** * *** * ** ****
consensus_8054#0 AAAAATACAAACAGAGTGTTTAGTGTTTTGGTTGTT--GACTCTCGACCGAAATTTGAAG 718
consensus_8054#1 AGTCACAC---TGGAGCAAATGATGCTCTGTTTTGTCGGAGTTTCGGACCAGTTTTG--- 643
* * ** *** * ** * ** ** * ** * *** * * ****
consensus_8054#0 GTAGACAAATGCTAACCAGATTGTTAAAAGCAGGAATACCATGTGAATATACACATATNC 778
consensus_8054#1 -CAAGCTCATGTAAACT---TTCTTCAGCTTTGTCGTCCATTACCTGTTACGATATATAA 699
* * *** *** ** ** * * * * * * * ****
consensus_8054#0 GGTGCATTGCCAAGTGTCGCAAATAAGATATC-TCTAGTTATTCTGGGCGCCCATGCTCT 837
consensus_8054#1 TGCATATCAGTATCTGAAGCAGACGCTTACTCGCCTAGATTCCGTGGAAGATT------- 752
* ** * ** *** * ** **** * *** *
consensus_8054#0 TCTTAGCAACGGGTACG 854
consensus_8054#1 -----------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||