cluster # 8056

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Schistosoma mansoni
cluster # 8056 cluster # 8056 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8056#0 length = 984 sequences # 3

consensus_8056#1 length = 418 sequences # 1
consensus_8056#2 length = 308 sequences # 2

consensusID : consensus_8056#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 984
fasta sequence

                              [CCAGAATTCGGCACGAGGCGGCACGAGGCTCTGTGTGGCGTGGTGTTCTAGATGGTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACATTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAATTGGGTCTTATTAAAAATTGTGATTCTTTGCCGCATAATACTAGTATGCTCAGATCATTAGTGTTGTCTGTTGCTGGTGCAGGAGCAGAAGATAATAATATAGTTGAAGAAGCTAAAAGACTTTTTGAAGCTCATCGTTCAGGCGAGAAAGAATTGCCAAATGATTTACGTACAGAAATTTACACAATAGTTGTACGTCATGGCTCTACAGATGTAATTCAATATCTTATGGACAGATATAGTCATACGGACTCACCTGAAGAACGCCATCATATTCTCTTGGCTCTGGGCGCAGCACGTGAAACTAATTGTAATGGCCTTAATAATTCATCATCTTCTTCGTCGCCTTTATCGGATGTTCTACATTTTTGTTTGAATCCAAACGGCCCAATAAAAGATCAAGATAGAATTCATGGACTGGTCGCTTGTTCATCGTGGTCTATTCCAGCTAGACTAGCGACATGGAAAAGTATCACTAATGAATGGAGTAGAATAATCGAATTGTATAGTGGTCAGTTTTTATTACCATCTCTCTTAGAAGGTGTTTTATCAGGATTCTCGACAAAATCTCATATATCAGCGATCAAAGAATTTTTCGATGCAAATCCAGTTTGTTGCACGCGTACTTTAGATCAAATTTATGAAACTTTATCTATCAACCAAACTGTTCTTGAACGTGACAGTCCATTAATTGCTAAAGCATTGAATACTTTGTGCAGTACTTTGAATTAAATGTACTACATATTTTTCAAGCCATAAATCGTGTATGAAACAAACTTATAATTTTCTGTTTACATTTCGAAAAAACATGTTTCTAAAAATAAACATA]

[+] EMBL CD082799             [CCAGAATTCGGCACGAGGCGGCACGAGGCTCTGTGTGGCGTGGTGTTCTAGATGGTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACATTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAATTGGGTCTTATTAAAAATTGTGATTCTTTGCCGCATAATACTAGTATGCTCAGATCATTAGTGTTGTCTGTTGCTGGTGCAGGAGCAGAAGATAATAATATAGTTGAAGAAGCTAAAAGACTTTTTGAAGCTCATCGTTCAGGCGAGAAAGAATTGCCAAATGATTTACGTACAGAAATTTACACAATAGTTGTACGTCATGGCTCTACAGATGTAATTCAATATCTTATGGACAGATATAGTCATACGGACTCACCTGAAGAACGCCATCATATTCTCTTGGCTCTGGGCGCAGCACGTGAAACTAATTGTAATGGCCTTAATAATTCATCATCTTCTTCGTCGCCTTTATCGGATGTTCTACATTTTTGTTTGAATCCAAACGGCCCAATAAAAGATCAAGATAGAATTCATGGACTGGTCGCTTGTTCATCGTGGTCTATTCCAGCTAGACTAGCGACATGGAAAAGTATCACTAATGAATGGAGTAGA                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD136908             [                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTCTGGGCGCAGCACGTGAAACTAATTGTAATGGCCTTAATAATTCATCATCTTCTTCGTCGCCTTTATCGGATGTTCTACATTTTTGTTTGAATCCAAACGGCCCAATAAAAGATCAAGATAGAATTCATGGACTGGTCGCTTGTTCATCGTGGTCTATTCCAGCTAGACTAGCAACATGGAAAAGTATCACTAATGAATGGAGTAGAATAATCGAATTGTATAGTGGTCAGTTTTTATTACCATCTCTCTTAGAAGGTGTTTTATCAGGATTCTCGACAAAATCTCATATATCAGCGATCAAAGAATTTTTCGATGCAAATCCAGTTTGTTGCACGCGTACTTTAGATCAAATTTATGAAACTTTATCTATCAACCAAACTGTTCTTGAACGTGACAGTCCATTAATTGCTAAAGCATTGAATACTTTGTGCAGTACTTTGAATTAAATGTACTACATATTTTTCAAGCC                                                                          ]
[-] EMBL CD076391             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCATCATCTTCTTCGTCGCCTTTATCGGATGTTCTACATTTTTGTTTGAATCCAAACGGCCCAATAAAAGATCAAGATAGAATTCATGGACTGGTCGCTTGTTCATCGTGGTCTATTCCAGCTAGACTAGCGACATGGAAAAGTATCACTAATGAATGGAGTAGAATAATCGAATTGTATAGTGGTCAGTTTTTATTACCATCTCTCTTAGAAGGTGTTTTATCAGGATTCTCGACAAAATCTCATATATCAGCGATCAAAGAATTTTTCGATGCAAATCCAGTTTGTTGCACGCGTACTTTAGATCAAATTTATGAAACTTTATCTATCAACCAAACTGTTCTTGAACGTGACAGTCCATTAATTGCTAAAGCATTGAATACTTTGTGCAGTACTTTGAATTAAATGTACTACATATTTTTCAAGCCATAAATCGTGTATGAAACAAACTTATAATTTTCTGTTTACATTTCGAAAAAACATGTTTCTAAAAATAAACATA]




>consensus_8056#0
CCAGAATTCGGCACGAGGCGGCACGAGGCTCTGTGTGGCGTGGTGTTCTAGATGGTCTTA
ATACTTATATCAAGAGAATAATACAATCGAGTGACATTCCTTCCTCACTCTATAATAGTT
TCCTATTAAAATTAGTATATCCAGTAATAAATAAATTGGGTCTTATTAAAAATTGTGATT
CTTTGCCGCATAATACTAGTATGCTCAGATCATTAGTGTTGTCTGTTGCTGGTGCAGGAG
CAGAAGATAATAATATAGTTGAAGAAGCTAAAAGACTTTTTGAAGCTCATCGTTCAGGCG
AGAAAGAATTGCCAAATGATTTACGTACAGAAATTTACACAATAGTTGTACGTCATGGCT
CTACAGATGTAATTCAATATCTTATGGACAGATATAGTCATACGGACTCACCTGAAGAAC
GCCATCATATTCTCTTGGCTCTGGGCGCAGCACGTGAAACTAATTGTAATGGCCTTAATA
ATTCATCATCTTCTTCGTCGCCTTTATCGGATGTTCTACATTTTTGTTTGAATCCAAACG
GCCCAATAAAAGATCAAGATAGAATTCATGGACTGGTCGCTTGTTCATCGTGGTCTATTC
CAGCTAGACTAGCGACATGGAAAAGTATCACTAATGAATGGAGTAGAATAATCGAATTGT
ATAGTGGTCAGTTTTTATTACCATCTCTCTTAGAAGGTGTTTTATCAGGATTCTCGACAA
AATCTCATATATCAGCGATCAAAGAATTTTTCGATGCAAATCCAGTTTGTTGCACGCGTA
CTTTAGATCAAATTTATGAAACTTTATCTATCAACCAAACTGTTCTTGAACGTGACAGTC
CATTAATTGCTAAAGCATTGAATACTTTGTGCAGTACTTTGAATTAAATGTACTACATAT
TTTTCAAGCCATAAATCGTGTATGAAACAAACTTATAATTTTCTGTTTACATTTCGAAAA
AACATGTTTCTAAAAATAAACATA

consensusID : consensus_8056#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [GTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACAGTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAATTGGGTAAGTCATCAGAAAGAAATTTTTCTCTGTATTGAGATTTGCGTTTATTACTGTAATCGCTTTAACTATTATTTTGTGTGATAATCAGAAGGTTTTGCACACATAATATCAAGCTGTTTGATGACAATCATTCCTATAAGAGTGGAGAATACAATGTGATTAAATTTCAGATATGTGAAAGTAATTTCAGGTTCGTTTTAGGACACCTAAACATTTTTTGTTAAAATATGTCACTAGGTTTTCCAATATTTGCCGAAAATAAGAAGAGCGGAGTCCAACTACGCTTTATTTCGATAAACAGTAGTCAACTAGA]

[-] EMBL CD196373             [GTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACAGTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAATTGGGTAAGTCATCAGAAAGAAATTTTTCTCTGTATTGAGATTTGCGTTTATTACTGTAATCGCTTTAACTATTATTTTGTGTGATAATCAGAAGGTTTTGCACACATAATATCAAGCTGTTTGATGACAATCATTCCTATAAGAGTGGAGAATACAATGTGATTAAATTTCAGATATGTGAAAGTAATTTCAGGTTCGTTTTAGGACACCTAAACATTTTTTGTTAAAATATGTCACTAGGTTTTCCAATATTTGCCGAAAATAAGAAGAGCGGAGTCCAACTACGCTTTATTTCGATAAACAGTAGTCAACTAGA]




>consensus_8056#1
GTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACAGTCCTTCCTCACTCTATA
ATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAATTGGGTAAGTCATCAGAAA
GAAATTTTTCTCTGTATTGAGATTTGCGTTTATTACTGTAATCGCTTTAACTATTATTTT
GTGTGATAATCAGAAGGTTTTGCACACATAATATCAAGCTGTTTGATGACAATCATTCCT
ATAAGAGTGGAGAATACAATGTGATTAAATTTCAGATATGTGAAAGTAATTTCAGGTTCG
TTTTAGGACACCTAAACATTTTTTGTTAAAATATGTCACTAGGTTTTCCAATATTTGCCG
AAAATAAGAAGAGCGGAGTCCAACTACGCTTTATTTCGATAAACAGTAGTCAACTAGA

consensusID : consensus_8056#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 308
fasta sequence

                              [TAGTCGCTTCGTATTCATTAATGATGGATTCGCATTAGCTAAGGCTGGTTACATTAGTGTTTACAGATTGGCTTATACTTTTGCCTACATTAATGGAAAACGAAAATGATTACTCTGTGTGGCGTGGTGTTCTAGATGGTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACATTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAATTGGGTCTTATAAAAAATTGTGATTCTTTGCCGCATAATACTAGTATGCTCAGATCATTAGTGTTGTCT]

[+] EMBL CD189553             [TAGTCGCTTCGTATTCATTAATGATGGATTCGCATTAGCTAAGGCTGGTTACATTAGTGTTTACAGATTGGCTTATACTTTTGCCTACATTAATGGAAAACGAAAATGATTACTCTGTGTGGCGTGGTGTTCTAGATGGTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACATTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAATTGGGTCTTATAAAAAATTGTGATTCTTTGCCGCATAATACTAGTATGCTCAGATCATTAGTGTTGTCT]
[+] EMBL CD164137             [                                                               acGATTGGCTTATACTTTTGCCTACATTAATGGAAAACGAAAATGATTACTCTGTGTGGCGTGGTGTTCTAGATGGTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACATTCCTTCCTCACTCTATAATAGTTTCCTATTA                                                                                                ]




>consensus_8056#2
TAGTCGCTTCGTATTCATTAATGATGGATTCGCATTAGCTAAGGCTGGTTACATTAGTGT
TTACAGATTGGCTTATACTTTTGCCTACATTAATGGAAAACGAAAATGATTACTCTGTGT
GGCGTGGTGTTCTAGATGGTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACA
TTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAAT
TGGGTCTTATAAAAAATTGTGATTCTTTGCCGCATAATACTAGTATGCTCAGATCATTAG
TGTTGTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8056#0      ------------------------------------------------------------
consensus_8056#2      TAGTCGCTTCGTATTCATTAATGATGGATTCGCATTAGCTAAGGCTGGTTACATTAGTGT 60
consensus_8056#1      ------------------------------------------------------------
                                                                                  

consensus_8056#0      -----------------------CCAGAATTCGGCACGAGGCGGCACGAG-GCTCTGTGT 36
consensus_8056#2      TTACAGATTGGCTTATACTTTTGCCTACATTAATGGAAAACGAAAATGATTACTCTGTGT 120
consensus_8056#1      ------------------------------------------------------------
                                                                                  

consensus_8056#0      GGCGTGGTGTTCTAGATGGTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACA 96
consensus_8056#2      GGCGTGGTGTTCTAGATGGTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACA 180
consensus_8056#1      ------------------GTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACA 42
                                        ******************************************

consensus_8056#0      TTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAAT 156
consensus_8056#2      TTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAAT 240
consensus_8056#1      GTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAAT 102
                       ***********************************************************

consensus_8056#0      TGGGTC--TTATTAAAAATTGTGATTCTTTGCCGCAT-AATACTAGTATGC-TCAGATCA 212
consensus_8056#2      TGGGTC--TTATAAAAAATTGTGATTCTTTGCCGCAT-AATACTAGTATGC-TCAGATCA 296
consensus_8056#1      TGGGTAAGTCATCAGAAA--GAAATTTTTCTCTGTATTGAGATTTGCGTTTATTACTGTA 160
                      *****   * ** * ***  *  *** **  * * **  * * * *  *   * *    *

consensus_8056#0      TTAGTGTTGTCTGTTGCTGGTGCAGGAGCAGAAGATAATAATATAGTTGAAGAAGCTAAA 272
consensus_8056#2      TTAGTGTTGTCT------------------------------------------------ 308
consensus_8056#1      ATCGCTTTAACTATTATTT-TGTGTGATAATCAGAAGGTTTTGCA-CACATAATATCAAG 218
                       * *  **  **                                                

consensus_8056#0      AGACTTTTTGAAGCTCATCGTTCAGGCGAGAAAGAATTGCCAAATGATTTACGTACAGAA 332
consensus_8056#2      ------------------------------------------------------------
consensus_8056#1      CTGTTTGATGACAATCATTCCT-ATAAGAGTGGAGAATACAATGTGATTAAATTTCAGAT 277
                                                                                  

consensus_8056#0      ATTTACACAATAGTTGTACGTCATGGCTCTACAGATGTAATTCAATATCTTATGGACAGA 392
consensus_8056#2      ------------------------------------------------------------
consensus_8056#1      ATGTG-AAAGTAATT-----TCAGGTTCGTTTTAGGACACCTAAACATTTTTTGTTAAAA 331
                                                                                  

consensus_8056#0      TATAGTCATACGGACTCACCTGAAGAACGCCATCATATTCTCTTGGCTCTGGGCGCAGCA 452
consensus_8056#2      ------------------------------------------------------------
consensus_8056#1      TATGTCACTAGGTTTTCCAATATTTGCCGAAAATAAGAAGAGCGGAGTCCAACTACGCTT 391
                                                                                  

consensus_8056#0      CGTGA-AACTAATTGTAATGGCCTTAATAATTCATCATCTTCTTCGTCGCCTTTATCGGA 511
consensus_8056#2      ------------------------------------------------------------
consensus_8056#1      TATTTCGATAAACAGTAGTCAACTAGA--------------------------------- 418
                                                                                  

consensus_8056#0      TGTTCTACATTTTTGTTTGAATCCAAACGGCCCAATAAAAGATCAAGATAGAATTCATGG 571
consensus_8056#2      ------------------------------------------------------------
consensus_8056#1      ------------------------------------------------------------
                                                                                  

consensus_8056#0      ACTGGTCGCTTGTTCATCGTGGTCTATTCCAGCTAGACTAGCGACATGGAAAAGTATCAC 631
consensus_8056#2      ------------------------------------------------------------
consensus_8056#1      ------------------------------------------------------------
                                                                                  

consensus_8056#0      TAATGAATGGAGTAGAATAATCGAATTGTATAGTGGTCAGTTTTTATTACCATCTCTCTT 691
consensus_8056#2      ------------------------------------------------------------
consensus_8056#1      ------------------------------------------------------------
                                                                                  

consensus_8056#0      AGAAGGTGTTTTATCAGGATTCTCGACAAAATCTCATATATCAGCGATCAAAGAATTTTT 751
consensus_8056#2      ------------------------------------------------------------
consensus_8056#1      ------------------------------------------------------------
                                                                                  

consensus_8056#0      CGATGCAAATCCAGTTTGTTGCACGCGTACTTTAGATCAAATTTATGAAACTTTATCTAT 811
consensus_8056#2      ------------------------------------------------------------
consensus_8056#1      ------------------------------------------------------------
                                                                                  

consensus_8056#0      CAACCAAACTGTTCTTGAACGTGACAGTCCATTAATTGCTAAAGCATTGAATACTTTGTG 871
consensus_8056#2      ------------------------------------------------------------
consensus_8056#1      ------------------------------------------------------------
                                                                                  

consensus_8056#0      CAGTACTTTGAATTAAATGTACTACATATTTTTCAAGCCATAAATCGTGTATGAAACAAA 931
consensus_8056#2      ------------------------------------------------------------
consensus_8056#1      ------------------------------------------------------------
                                                                                  

consensus_8056#0      CTTATAATTTTCTGTTTACATTTCGAAAAAACATGTTTCTAAAAATAAACATA 984
consensus_8056#2      -----------------------------------------------------
consensus_8056#1      -----------------------------------------------------