These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8058#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1073 fasta sequence [AGCGCCGACCATTAATGTACCTAAAGCAGTGATTTCACCTGTAAAGTCCCCCAAAAAAGGTCGCCGTCTGAAAAAACGTCTGGAAGTTTCTGAGACAAATTCGGAGTCACATCAACAAATTACTCCTTCTAGTCATTATAAAACTTTTGAAAATGACCTTAATCCTGGCCAATGTCTTTCACTACAAGCCTCCAGTCCTTACATACCAACACACTTTCCAAGCATTCGATGCCAAGCATTTTACTACGCTATTCAGGAAAAATTATTCTCTTCTTTGTCCCAAGAAAAATTACTTCATATTGATAACGAACATTTACTAGCTGTGAACTCAGATTTGGATGATAAGGTTGACGCAGCATTGAGAGCAGAAACTTTGTTCAAACTATGGTCCTTACATAGCGCCTATTATTCTCTTTCCTCCATTATATTCTGCAAGGCAGTGTGTTTAATGGATTTACTGGTTGCTAAAGTCAAAGTTAAGCCGAAGTACGCAATGTGCGTGGCCGCTGCATGCTACTATATCACCTCCAAGTTCGAGAGATCATCCGACCACGTTTCACCCACACCCGAAAGCCTTGTAACGCTATCACGATGTGGCGGCACAGCTGCTGATCTGACGCGAATGGTGGAAATTATCCTTACAAAGTTGGGACCTTCCAGCGTTGCTGCTATAGGTGCATGCTCGGCTACAGCTATTGATTTCCTGTCCAGTTTCTCATCGTTCGGCATTCCGCTTGTGTCTTATCAGAATAAATCTGGAAGTCNAAACACTTGGTTGCCTGTCCCTATTTCTATTTGTCGTCAGATCGAAATCGCTCTAGTCTCCTCAGAAGTATCATGCTTTCGTCCTTCGTGCCTAGCACTGGCCTTGATTAATCATCTTTGTTTTAATTCAGCTGTGGGGTCACTGGGTTCAGTTGACGATTGGCTGCAGTTTCATACGTCTGACCTCTATAACTTGTCACTTATATGCAACATTTCTTGGACTGATGTTATTGCATGTTCTTCCACATTAAAGGAAGCACTTACCAAAACATCGGGATCCTACACAGTTCAGGATTACCCTTCATCCC] [+] EMBL CD125105 [AGCGCCGACCATTAATGTACCTAAAGCAGTGATTTCACCTGTAAAGTCCCCCAAAAAAGGTCGCCGTCTGAAAAAACGTCTGGAAGTTTCTGAGACAAATTCGGAGTCACATCAACAAATTACTCCTTCTAGTCATTATAAAACTTTTGAAAATGACCTTAATCCTGGCCAATGTCTTTCACTACAAGCCTCCAGTCCTTACATACCAACACACTTTCCAAGCATTCGATGCCAAGCATTTTACTACGCTATTCAGGAAAAATTATTCTCTTCTTTGTCCCAAGAAAAATTACTTCATATTGATAACGAACATTTACTAGCTGTGAACTCAGATTTGGATGATCAGGTTGAC ] [+] EMBL CD125071 [AGCGCCGACCATTAATGTACCTAAAGCAGTGATTTCACCTGTAAAGTCCCCCAAAAAAGGTCGCCGTCTGAAAAAACGTCTGGAAGTTTCTGAGACAAATTCGGAGTCACATCAACAAATTACTCCTTCTAGTCATTATAAAACTTTTGAAAATGACCTTAATCCTGGCCAATGTCTTTCACTACAAGCCTCCAGTCCTTACATACCAACACACTTTCCAAGCATTCGATGCCAAGCATTTTACTACGCTATTCAGGAAAAATTATTCTCTTCTTTGTCCCAAGAAAAATTACTTCATATTGATAACGAACATTTACTAGCTGTGAACTCAGATTTGGATGATAAGGTTGAC ] [+] EMBL CD062094 [ TTTCAAGCATTCGATGCCAAGCATTTTACTACGCTATTCAGGAAAAATTATTCTCTTCTTTGTCCCAAGAAAAATTACCTCATATTGATAACGAACATTTACTAGCTGTGAACTCAGATTTGGATGATAAGGTTGACGCAGCATTGAGAGCAGAAACTTTGTTCAAACTATGGTCCTTACATAGCGCCTATTATTCTCTTTCCTCCATTATATTCTGCAAGGCAGTGTGTTTAATGGATTTACTGGTTGCTAAAGTCAAAGTTAAGCCGAAGTACGCAATGTGCGTGGCCGCTGCATGCTACTATATCACCTCCAAGTTCGAGAGATCATCCGACCACGTTT ] [+] EMBL CD184995 [ TTTGTTCAAACTATGGTCCTTACATAGCGCCTATTATTCTCTTTCCTCCATTATATTCTGCAAGGCAGTGTGTTTAATGGATTTACTGGTTGCTAAAGTCAAAGTTAAGCCGAAGTACGCAATGTGCGTGGCCGCTGCATGCTACTATATCACCTCCAAGTTCGAGAGATCATCCGACCACGTTTCACCCACACCCGAAAGCCTTGTAACGCTATCACGATGTGGCGGCACAGCTGCTGATCTGACGCGAATGGTGGAAATTATCCTTACAAAGTTGGGACCTTCCAGCGTTGCTGCTATAGGTGCATGCTCGGCTACAGCTATTGATTTCCTGTCCAGTTTCTCATCGTTCGGCATTCCGCTTGTGTCTTATCAGAATAAATCTGGAAGTCNAAACACTTGGTTGCCTGTCCCTA ] [-] EMBL CD125562 [ TGCTCGGCTACAGCTATTGATTTCCTGTCCATTTTCTCATCGTTCGGCATTCCGTTTGTGTCTTATCAGAATAAATCTGGAAGTCAAAACACTTGGTTGCCTGTCCCTATTTCTATTTGTCGTCAGATCGAAATCGCTCTAGTCTCCTCAGAAGTATCATGCTTTCGTCCTTCGTGCCTAGCACTGGCCTTGATTAATCATCTTTGTTTTAATTCAGCTGTGGGGTCACTGGGTTCAGTTGACGATTGGCTGCAGTTTCATACGTCTGACCTCTATAACTTGTCACTTATATGCAACATTTCTTGGACTGATGTTATTGCATGTTCTTCCACATTAAAGGAAGCACTTACCAAAACATCGGGATCCTACACAGTTCAGGATTACCCTTCATCCC] consensusID : consensus_8058#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 727 fasta sequence [CCCTCGGGCCAAAAATTCGGCACGAGGTTTGTTTTAATTCAGCTGTGGGGTCACTGGGTTCAGTTGACGATTGGCTGCAGTTTCATACGTCTGACCTCTATAACTTGTCACTTATATGCAACATTTCTTGGACTGATGTTATTGCATGTTCTTCCACATTAAAGGAAGCACTTACCAAAACATCGGGATCCTACACAGTTCAGGATTACCCTTCATCCCGTCTATTAGGCAGCTCACCACCACTTGTGTGGACTTTATCAAGGCGCACACAACGCAGCATTTCTACATCTTCTCCTCCAGCTCTTTCAACTATCACAGAGATAGATGAAGAGCTGGTTCATTTAAATGATATTTTTTCGAACATGGATTTGGGTTTATAAAACTTGGACGAGGCATATTCAAGTCTTAACGTTTTATTATCGTTTTATTGAAATATCCTCCCTTCTCATTATTTTTCAGCTTTTATAATCCTAATATAAATTTTGATTATTAGACCAATCTGTGATTGGGAAATCCAAGGGAAAAAAAAACTTTTTAAACTTACTGTGAAAAAAACGAAAGATAGAAGTTTTCATTCCTGTTATCATTTGTTATTGTTGTTTCTCTGAACTATTTCCCTCTCCTCNATTTTAATCAGTTGTGTACAAACTTCAGAATTATTTGTTTTTTTAGAGAAAAAAAATTAACAATCAGTTTACTTTGTTAGTTAATCAGCAGCAAAAACTAT] [+] EMBL CD081827 [CCCTCGGGCCAAAAATTCGGCACGAGGTTTGTTTTAATTCAGCTGTGGGGTCACTGGGTTCAGTTGACGATTGGCTGCAGTTTCATACGTCTGACCTCTATAACTTGTCACTTATATGCAACATTTCTTGGACTGATGTTATTGCATGTTCTTCCACATTAAAGGAAGCACTTACCAAAACATCGGGATCCTACACAGTTCAGGATTACCCTTCATCCCGTCTATTAGGCAGCTCACCACCACTTGTGTGGACTTTATCAAGGCGCACACAACGCAGCATTTCTACATCTTCTCCTCCAGCTCTTTCAACTATCACAGAGATAGATGAAGAGCTGGTTCATTTAAATGATATTTTTTCGAACATGGATTTGGGTTTATAAAACTTGGACGAGGCATATTCAAGTCTTAACGTTTTATTATCGTTTTATTGAAATATCCTCCCTTCTCATTATTTTTCAGCTTTTATAATCCTAATATAAATTTTGATTATTAGACCAATCTGTGATTGGGAAATCCAAGGGAAAAAAAAACTTTTTAAACTTACTGTGAAAAAAACGAAAGATAGAAGTTTTCATTCCTGTTATCATTTGTTATTGTTGTTTCTCTGAACTATTTCCCTCTCCTCNATTTTAATCAGTTGTGTACAAACTTCAGAATTATTTGTTTTTTTAGAGAAAAAAAATTAACAATCAGTTTACTTTGTTAGTTAATCAGCAGCAAAAACTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8058#0 AGCGCCGACCATTAATGTACCTAAAGCAGTGATTTCACCTGTAAAGTCCCCCAAAAAAGG 60 consensus_8058#1 ------------------------------------------------------------ consensus_8058#0 TCGCCGTCTGAAAAAACGTCTGGAAGTTTCTGAGACAAATTCGGAGTCACATCAACAAAT 120 consensus_8058#1 ------------------------------------------------------------ consensus_8058#0 TACTCCTTCTAGTCATTATAAAACTTTTGAAAATGACCTTAATCCTGGCCAATGTCTTTC 180 consensus_8058#1 ------------------------------------------------------------ consensus_8058#0 ACTACAAGCCTCCAGTCCTTACATACCA-ACACACTTTCCAAGCATTCGATGCCAAGCAT 239 consensus_8058#1 --------CCCTCGGGCCAAAAATTCGGCACGAGGTTTGTTTTAATTCAGCTGTGGGG-- 50 ** * * ** * ** * ** *** **** * consensus_8058#0 TTTACTACGCT--ATTCAGGAAAAATTATTCTCTTCTTTGTCCCAAGAAAAATTACTTCA 297 consensus_8058#1 -TCACTGGGTTCAGTTGACGATTGGCTGCAGTTTCATACGTCT-GACCTCTATAACTTGT 108 * *** * * ** * ** * * * * *** * ** **** consensus_8058#0 TATTGATAACGAACATTTACTAGCTGTGAACTCAGATTTGGATGATAAGGTTGACGCAGC 357 consensus_8058#1 CACTTATATGCAACATTTCTTGG------ACTGATGTT---ATTGCATGTTC--TTCCAC 157 * * *** ******* * * *** * ** ** * * * * * consensus_8058#0 ATTGAGAGCAGAAACTTTGTTCAAAC-TATGGTCCTTACATAGCGCCTATTATTCTCTTT 416 consensus_8058#1 ATTAAAGGAAGCA--CTTACCAAAACATCGGGATCCTACACAGTTC--AGGATTACCCTT 213 *** * * ** * ** **** * ** * **** ** * * *** * ** consensus_8058#0 CCTCCATTATATTCTGCAAGGCAGTGTGTTTAATGGATTTACTGGTTGCTAAAGTCAAAG 476 consensus_8058#1 CATCCCGTCTATTAGGCAGCTCACCACCACT--TGTGTGGACT--TTATCAAGGCGCACA 269 * *** * **** *** ** * ** * *** ** ** * * consensus_8058#0 TTAAGCCGAAGTACGCAATGTGCGTGGCCGCTGCATGCTACTATATCACCTCCAAGTTCG 536 consensus_8058#1 CAACGCAGCATTTCTACATCTTCTCCTCCAGCTCTTTCAACTATCACAGAGATAGATGAA 329 * ** * * * * ** * * ** * * * ***** ** * * consensus_8058#0 AGA---GATCATCCGACCACGTTTCACCCACACCCGAA---AGCCTTGTAACGCTATCAC 590 consensus_8058#1 GAGCTGGTTCATTTAAATGATATTTTTTCGAACATGGATTTGGGTTTATAAAACTTGGAC 389 * **** * ** * ** * * * ** *** ** ** consensus_8058#0 GATGTGGCGGCACAGCTGCTGATCTGACG--CGAATGGTGGAAATTATCCTTACAAAGTT 648 consensus_8058#1 GAGGCATATTCAAGTCTTAACGTTTTATTATCGTTTTATTGAAAT-ATCCTCCCTTC-TC 447 ** * ** ** * * * ** * * ***** ***** * * consensus_8058#0 GGGACCTTCCAGCGTTGCTGCTATAGGTGCATGCTCGGCTACAGCTATTGATTTCCTGTC 708 consensus_8058#1 ATTATTTTTCAGCTTTTATAATCCTAATATAAATTTTGATTATTAGACCAATCTGTGATT 507 * ** **** ** * * * * * * * * ** * * consensus_8058#0 CAGTTTCTCATCGTTCGGCATTCCGCTTGTGTCTTATCAGAATAAATCTGGAAGTCNAAA 768 consensus_8058#1 GGGAAATCCAAGGGAAAAAAAAACTTTTTAAACTTACTGTGAAAAAAACGAAAGATAGAA 567 * ** * * * ** **** * *** * *** ** consensus_8058#0 CACTTGGTTGCCTGTCCCTATTTCTATTTGTCGTCAGATCGAAATCGCTCTAGTCTCCTC 828 consensus_8058#1 GTTTTCATT-CCTGTTATCATTTGTTATTGTTGTTTC-TCTGAACTATTTCCCTCTCCTC 625 ** ** ***** **** * **** ** ** ** * ******* consensus_8058#0 AGAAGTATCATGCTTTCGTCCTTCGTGCCTAGCACTGGCCTTGATTAATCATCTTTGTTT 888 consensus_8058#1 NA----------TTTTAATCAGTTGTGTACAAACTTCAGAATTATTTGTTTTTTTAGAGA 675 *** ** * *** * * * *** * * ** * consensus_8058#0 TAAT---TCAGCTGTGGGGTCACTGGGTTCAGTTGACGATTGGCTGCAGTTTCATACGTC 945 consensus_8058#1 AAAAAAATTAACAATCAGTTTACTTTGTT-AGTTAATCAGCAGCAAAAACTAT------- 727 ** * * * * * * *** *** **** * * ** * * consensus_8058#0 TGACCTCTATAACTTGTCACTTATATGCAACATTTCTTGGACTGATGTTATTGCATGTTC 1005 consensus_8058#1 ------------------------------------------------------------ consensus_8058#0 TTCCACATTAAAGGAAGCACTTACCAAAACATCGGGATCCTACACAGTTCAGGATTACCC 1065 consensus_8058#1 ------------------------------------------------------------ consensus_8058#0 TTCATCCC 1073 consensus_8058#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||