Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8060 cluster # 8060       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8060#0 length = 949 sequences # 3  
consensus_8060#1 length = 525 sequences # 2  
consensus_8060#2 length = 284 sequences # 1  

consensusID : consensus_8060#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 949
fasta sequence
                              [CCCGNAAGAGCCATAGGTAGGTGATAAATAAATGGTTATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATTTCGATTGTTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTATTAACCTACCTATGAACATACTACTTACTTGATTACCTATGAAACATGTACATATAGAAGTAACGTGAGTTGACACACGATTGGTTTCGATTGACAAACAAACTAACTAACTGCATAGTTTTCTACATTTGTTTACATAATTTTGACTGTTTCTCTAATATGAACAGGTTCATGTTAGACTGTTGAATAAACGCCATATATGATGATATTTTGTGAGAATACTTTTATTACCTTGTTCTATGACTGAATTAATTTTGTCAATGAGTGGAAGAGATGAGGTGATCGGAACTGAAGACATGATTGTTGTTTATAGTCAATGGAATAATAATAATGAAGACAGTGATGGTAACATTAACATAAATAAAACTGGTATGAAAGTTATCAGCGGATAGTGGTTGGCAAACTAACTAACTAATTAACTGTACGTGTTATGAGGATGAGTTTGTTTTTTCTGCTTATTTGACTTGGTTAATTTATATGGTCTGCTTACCTATTTCCTTGTTTCTTATTAATTGTGTACATGAGAGATAGATAAGCATAGCATTGACTTTTGAAACAACTTCTGAATTGACTAGTAGTGAGCAAGAAGTTTTGTGAGAGGTTGAGAGTTGTTTAGTTTTGTTTTTTGTGGTGAGTCCAAANGATTGGGC]

[+] EMBL CD127946             [CCCGNAAGAGCCATAGGTAGGTGATAAATAAATGGTTATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATTTCGATTGTTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD115587             [                                                                                                                           CAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTATTAACCTACCTATGAACATACTACTTACTTGATTACCTATGAAACATGTACATATAGAAGTAACGTGAGTTGACACACGATTGGTTTCGATTGACAAACAAACTAACTAACTGCATAGTTTTCTACATTTGTTTACATAATTTTGACTGTTTCTCTAATATGAACAGGTTCATGTTAGACTGTTGAATAAACGCCATATATGATGATATTTTGTGAGAATACTTTTATTACCTTGTTCTATGACTGAATTAATTTTGTCAATGAGTGGAAGAGATG                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD128868             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CATATATGATGATATTTTGTGAGAATACTTTTATTACCTTGTTCTATGACTGAATTAATTTTGTCAATGAGTGGAAGAGATGAGGTGATCGGAACTGAAGACATGATTGTTGTTTATAGTCAATGGAATAATAATAATGAAGACAGTGATGGTAACATTAACATAAATAAAACTGGTATGAAAGTTATCAGCGGATAGTGGTTGGCAAACTAACTAACTAATTAACTGTACGTGTTATGAGGATGAGTTTGTTTTTTCTGCTTATTTGACTTGGTTAATTTATATGGTCTGCTTACCTATTTCCTTGTTTCTTATTAATTGTGTACATGAGAGATAGATAAGCATAGCATTGACTTTTGAAACAACTTCTGAATTGACTAGTAGTGAGCAAGAAGTTTTGTGAGAGGTTGAGAGTTGTTTAGTTTTGTTTTTTGTGGTGAGTCCAAANGATTGGGC]


>consensus_8060#0 CCCGNAAGAGCCATAGGTAGGTGATAAATAAATGGTTATCTGGTCAACTAACCGTTGACT TCAATGAGAGAAGACTTATGGTCATTTCGATTGTTTGGTACAATATGAATTTTTGGAATG AAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTT GGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACAT GACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTAT TAACCTACCTATGAACATACTACTTACTTGATTACCTATGAAACATGTACATATAGAAGT AACGTGAGTTGACACACGATTGGTTTCGATTGACAAACAAACTAACTAACTGCATAGTTT TCTACATTTGTTTACATAATTTTGACTGTTTCTCTAATATGAACAGGTTCATGTTAGACT GTTGAATAAACGCCATATATGATGATATTTTGTGAGAATACTTTTATTACCTTGTTCTAT GACTGAATTAATTTTGTCAATGAGTGGAAGAGATGAGGTGATCGGAACTGAAGACATGAT TGTTGTTTATAGTCAATGGAATAATAATAATGAAGACAGTGATGGTAACATTAACATAAA TAAAACTGGTATGAAAGTTATCAGCGGATAGTGGTTGGCAAACTAACTAACTAATTAACT GTACGTGTTATGAGGATGAGTTTGTTTTTTCTGCTTATTTGACTTGGTTAATTTATATGG TCTGCTTACCTATTTCCTTGTTTCTTATTAATTGTGTACATGAGAGATAGATAAGCATAG CATTGACTTTTGAAACAACTTCTGAATTGACTAGTAGTGAGCAAGAAGTTTTGTGAGAGG TTGAGAGTTGTTTAGTTTTGTTTTTTGTGGTGAGTCCAAANGATTGGGC



consensusID : consensus_8060#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 525
fasta sequence
                              [TTCAAGCTCTTCATGTATTTTTATCAGCATCAAACAGGCATTCGTGCTGTCGCTGAATGTATGGCCAAGTCCAAGTCAGAGGAAACACAAGAGTCTGCTAGAGATTTATTAGAAATATTAGCTGAAGGCAATCCTCGTTTCTCTGATCAAGTTTACAAAGGATTAATTGGTGTTTTACCATGTAATTCACCAAAAGCTCAACAATTAGCTCTTCAAAGTATA-CGGATTTTACAGGCAAAGCGTAATACTGCCAATAGAGCCTTAATCGACAGAATAGTCTACTTACTGGAGTCATTACATTTGGAAGTACAATCAGCAGTTATTGAATTAGTTCGTGTTCTGATGGGATTCGATATTGTCGATGATATATTAATGGCCTTAATTACCTTGTTAAAACCTCAACATGAAATACAACTGGGCAAATTGTTTACAGAAGTAACATCAGATGATAACAATGATGAAATAAGTTCACCTCATATGGACAGTAATGAGGAAAGATATCCTTCTCATCCTGCCCCGTTAGGT]

[+] EMBL CD183976             [TTCAAGCTCTTCATGTATTTTTATCAGCATCAAACAGGCATTCGTGCTGTCGCTGAATGTATGGCCAAGTCCAAGTCAGAGGAAACACAAGAGTCTGCTAGAGATTTATTAGAAATATTAGCTGAAGGCAATCCTCGTTTCTCTGATCAAGTTTACAAAGGATTAATTGGTGTTTTACCATGTAATTCACCAAAAGCTCAACAATTAGCTCTTCAAAGTATA CGGATTTTACAGGCAAAGCGTAATACTGCCAATAGAGCCTTAATCGACAGAATAGTCTACTTACTGGAGTCATTACATTTGGAAGTACAATCAGCAGTTATTGAATTAGTTCGTGTTCTGATGGGATTCGATATTGTCGATGATATATTAATGGCCTTAATTACCTTGTTAAAACCTCAACATGAAATACAACTGGGCAAATTGTTTACAGAAGTAACATCAGATGATAACAATGATGAAATAAGTTCACCTCATATGGACAGTAATGAGGAAAGATATCCTTCTCATCCTGCCCCGTTAGGT]
[+] EMBL CD184052             [TTCAAGCTCTTCATGTATTTTTATCAGCATCAAACAGGCTTTCGTGCTGTCGCTGAATGTATGGCCAAGTCCAAGTCAGAGGAAACACAAAAGTCTGCTAGAAATTTATTAAAATTATTAGGGGAGGGCATTCCTCTTTTTTCTGATCAAGTTAACAAAGGATTAATTGGTGTTTTACCATGTAATTCACCAAAAGCTCAACAATTAGCTCTTCAAAG ATACCCGATTTTACAGGCAAAGCGTAATACTGCCAATAGAGCCTTAATCGACAGAATAGTCTACTTACTGGAGTCATTACATNTGGAAGTACAATCAGCAng                                                                                                                                                                                                             ]


>consensus_8060#1 TTCAAGCTCTTCATGTATTTTTATCAGCATCAAACAGGCATTCGTGCTGTCGCTGAATGT ATGGCCAAGTCCAAGTCAGAGGAAACACAAGAGTCTGCTAGAGATTTATTAGAAATATTA GCTGAAGGCAATCCTCGTTTCTCTGATCAAGTTTACAAAGGATTAATTGGTGTTTTACCA TGTAATTCACCAAAAGCTCAACAATTAGCTCTTCAAAGTATACGGATTTTACAGGCAAAG CGTAATACTGCCAATAGAGCCTTAATCGACAGAATAGTCTACTTACTGGAGTCATTACAT TTGGAAGTACAATCAGCAGTTATTGAATTAGTTCGTGTTCTGATGGGATTCGATATTGTC GATGATATATTAATGGCCTTAATTACCTTGTTAAAACCTCAACATGAAATACAACTGGGC AAATTGTTTACAGAAGTAACATCAGATGATAACAATGATGAAATAAGTTCACCTCATATG GACAGTAATGAGGAAAGATATCCTTCTCATCCTGCCCCGTTAGGT



consensusID : consensus_8060#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 284
fasta sequence
                              [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACCGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTTCGTGCCAGTTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCGCGACACTTACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAAC]

[+] EMBL CD071289             [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACCGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTTCGTGCCAGTTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCGCGACACTTACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAAC]


>consensus_8060#2 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACCGGGCAG AAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAG TCGGATTCCCCTGGTTCGTGCCAGTTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGT ACAGCCGGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCGCGACACTTA CAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8060#0      CCCGNAAGAGCCATAGGTAGGTGATAAATAAATGGTTATCTGGTCAACTAACCGTTGACT 60
consensus_8060#1      ------------------------------------------------------------
consensus_8060#2      ------------------------------------------------------------
                                                                                  

consensus_8060#0      TCAATGAGAGAAGACTTATGGTCATTTCGATTGTTTGGTACAATATGAATTTTTGGAATG 120
consensus_8060#1      ------------------------------------------------------------
consensus_8060#2      ------------------------------------------------------------
                                                                                  

consensus_8060#0      AAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTT 180
consensus_8060#1      ------------------------------------------------------------
consensus_8060#2      ------------------------------------------------------------
                                                                                  

consensus_8060#0      GGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACAT 240
consensus_8060#1      ------------------------------------------------------------
consensus_8060#2      ------------------------------------------------------------
                                                                                  

consensus_8060#0      GACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTAT 300
consensus_8060#1      ----------------------------------------------TTCAAGCTCTTCAT 14
consensus_8060#2      ------------------------------------------------------------
                                                                                  

consensus_8060#0      TAACCTACCTATGAACATACTACTTACTTG-ATTACCTATGAA-ACATGTACATATAGAA 358
consensus_8060#1      GTATTTTTATCAGCATCAAACAGGCATTCGTGCTGTCGCTGAATGTATGGCCAAGTCCAA 74
consensus_8060#2      ------------------------------------------------------------
                                                                                  

consensus_8060#0      GTAACGTGAGTTGACACACGATTGGTTTCGATTGACAAACAA-ACTAACTAACTGCA--- 414
consensus_8060#1      GTCAGAGGAAAC-ACAAGAGTCTGCTAGAGATTTATTAGAAATATTAGCTGAAGGCAATC 133
consensus_8060#2      --------------------------------------------CCCGCCGTTTACC--- 13
                                                                      *      *    

consensus_8060#0      --TAGTTTTCTACATTTGTTTACATAATTTTGACTGTTTCTCTAATATGAACAGGTTCAT 472
consensus_8060#1      CTCGTTTCTCTGATCAAGTTTACAAAGGATTAATTGGTGTTTTACCATGTA---ATTCAC 190
consensus_8060#2      CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACCGGGCAGAAATCACATTGCG 73
                           **   *       ** **       *                        **   

consensus_8060#0      GTTAGACTGTTGAATAAACGCCATATATGATGATATTTTGTGAGAATACTTTTATTACCT 532
consensus_8060#1      CAAAAGCTCAACAATTAGCTCTTCAAAGTATACGGATTTTACAGGCAAAGCGTAATACTG 250
consensus_8060#2      TCAAAACCAATCAGTGGACATCGCAA--TGCTTTGTTTTAATTAGACAGTCGGATTCCCC 131
                         *  *     * *   *     *           ***        *     * * *  

consensus_8060#0      TGTTCTATGACTGAATTAATT---TTGTCAATGAGTGGAAGAGATGAGGTGATCGGAACT 589
consensus_8060#1      CCAATAGAGCCTTAATCGACAGAATAGTCTACTTACTGGAGTCATTACAT--TTGGAAGT 308
consensus_8060#2      TGGTTCGTGCCAGTTCTGAGT---TAGCCGTCGCGCGCCAGAC----CAT----GGAAGT 180
                              * *       *     * * *          **        *    **** *

consensus_8060#0      GAAGACA-TGATTGTTG-TTTATAGTCAATGGAATAATAATAATGAAGACAGT-GATGGT 646
consensus_8060#1      ACAATCAGCAGTTATTG-AAT-TAGTTCGTGTTCTGATGGGATTCGATATTGTCGATGAT 366
consensus_8060#2      ACAGCCG--GCTTGACGCAACGTGGAACATGTCCTCGCG-CGTTGCTAGCTGC-----GC 232
                        *  *     **   *     * *    **   *        *       *        

consensus_8060#0      AACATTAACATAAATAA--AACTGGTATGAAAGTTATCAGCGGATAGTGGTTGGCAAACT 704
consensus_8060#1      A-TATTAATGGCCTTAATTACCTTGTTAAAACCTCAACATGAAATACAACTGGGCAAATT 425
consensus_8060#2      GACACTTACAGCTGAAACCGCCC------ACGATCGACCCGGGTCAGAGTCCAGTAAC-- 284
                         * * *       **    *       *   *   *       *       * **   

consensus_8060#0      AACTAACTAATTAACTGTACGTGTTA-TGAGGATGAGTTTGTTTTTTCTGCTTATTTGAC 763
consensus_8060#1      GTTTACAGAAGTAACATCAGATGATAACAATGATGAAATAAGTTCACCT-CATATGGACA 484
consensus_8060#2      ------------------------------------------------------------
                                                                                  

consensus_8060#0      TTGGTTAATTTATATGGTCTGCTTACCTATTTCCTTGTTTCTTATTAATTGTGTACATGA 823
consensus_8060#1      GTAATGAGGAAAGATATCCTTCTCATC--CTGCCCCGTTAGGT----------------- 525
consensus_8060#2      ------------------------------------------------------------
                                                                                  

consensus_8060#0      GAGATAGATAAGCATAGCATTGACTTTTGAAACAACTTCTGAATTGACTAGTAGTGAGCA 883
consensus_8060#1      ------------------------------------------------------------
consensus_8060#2      ------------------------------------------------------------
                                                                                  

consensus_8060#0      AGAAGTTTTGTGAGAGGTTGAGAGTTGTTTAGTTTTGTTTTTTGTGGTGAGTCCAAANGA 943
consensus_8060#1      ------------------------------------------------------------
consensus_8060#2      ------------------------------------------------------------
                                                                                  

consensus_8060#0      TTGGGC 949
consensus_8060#1      ------
consensus_8060#2      ------
                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)