These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8060#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 949 fasta sequence [CCCGNAAGAGCCATAGGTAGGTGATAAATAAATGGTTATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATTTCGATTGTTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTATTAACCTACCTATGAACATACTACTTACTTGATTACCTATGAAACATGTACATATAGAAGTAACGTGAGTTGACACACGATTGGTTTCGATTGACAAACAAACTAACTAACTGCATAGTTTTCTACATTTGTTTACATAATTTTGACTGTTTCTCTAATATGAACAGGTTCATGTTAGACTGTTGAATAAACGCCATATATGATGATATTTTGTGAGAATACTTTTATTACCTTGTTCTATGACTGAATTAATTTTGTCAATGAGTGGAAGAGATGAGGTGATCGGAACTGAAGACATGATTGTTGTTTATAGTCAATGGAATAATAATAATGAAGACAGTGATGGTAACATTAACATAAATAAAACTGGTATGAAAGTTATCAGCGGATAGTGGTTGGCAAACTAACTAACTAATTAACTGTACGTGTTATGAGGATGAGTTTGTTTTTTCTGCTTATTTGACTTGGTTAATTTATATGGTCTGCTTACCTATTTCCTTGTTTCTTATTAATTGTGTACATGAGAGATAGATAAGCATAGCATTGACTTTTGAAACAACTTCTGAATTGACTAGTAGTGAGCAAGAAGTTTTGTGAGAGGTTGAGAGTTGTTTAGTTTTGTTTTTTGTGGTGAGTCCAAANGATTGGGC] [+] EMBL CD127946 [CCCGNAAGAGCCATAGGTAGGTGATAAATAAATGGTTATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATTTCGATTGTTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACG ] [+] EMBL CD115587 [ CAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTATTAACCTACCTATGAACATACTACTTACTTGATTACCTATGAAACATGTACATATAGAAGTAACGTGAGTTGACACACGATTGGTTTCGATTGACAAACAAACTAACTAACTGCATAGTTTTCTACATTTGTTTACATAATTTTGACTGTTTCTCTAATATGAACAGGTTCATGTTAGACTGTTGAATAAACGCCATATATGATGATATTTTGTGAGAATACTTTTATTACCTTGTTCTATGACTGAATTAATTTTGTCAATGAGTGGAAGAGATG ] [-] EMBL CD128868 [ CATATATGATGATATTTTGTGAGAATACTTTTATTACCTTGTTCTATGACTGAATTAATTTTGTCAATGAGTGGAAGAGATGAGGTGATCGGAACTGAAGACATGATTGTTGTTTATAGTCAATGGAATAATAATAATGAAGACAGTGATGGTAACATTAACATAAATAAAACTGGTATGAAAGTTATCAGCGGATAGTGGTTGGCAAACTAACTAACTAATTAACTGTACGTGTTATGAGGATGAGTTTGTTTTTTCTGCTTATTTGACTTGGTTAATTTATATGGTCTGCTTACCTATTTCCTTGTTTCTTATTAATTGTGTACATGAGAGATAGATAAGCATAGCATTGACTTTTGAAACAACTTCTGAATTGACTAGTAGTGAGCAAGAAGTTTTGTGAGAGGTTGAGAGTTGTTTAGTTTTGTTTTTTGTGGTGAGTCCAAANGATTGGGC] consensusID : consensus_8060#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 525 fasta sequence [TTCAAGCTCTTCATGTATTTTTATCAGCATCAAACAGGCATTCGTGCTGTCGCTGAATGTATGGCCAAGTCCAAGTCAGAGGAAACACAAGAGTCTGCTAGAGATTTATTAGAAATATTAGCTGAAGGCAATCCTCGTTTCTCTGATCAAGTTTACAAAGGATTAATTGGTGTTTTACCATGTAATTCACCAAAAGCTCAACAATTAGCTCTTCAAAGTATA-CGGATTTTACAGGCAAAGCGTAATACTGCCAATAGAGCCTTAATCGACAGAATAGTCTACTTACTGGAGTCATTACATTTGGAAGTACAATCAGCAGTTATTGAATTAGTTCGTGTTCTGATGGGATTCGATATTGTCGATGATATATTAATGGCCTTAATTACCTTGTTAAAACCTCAACATGAAATACAACTGGGCAAATTGTTTACAGAAGTAACATCAGATGATAACAATGATGAAATAAGTTCACCTCATATGGACAGTAATGAGGAAAGATATCCTTCTCATCCTGCCCCGTTAGGT] [+] EMBL CD183976 [TTCAAGCTCTTCATGTATTTTTATCAGCATCAAACAGGCATTCGTGCTGTCGCTGAATGTATGGCCAAGTCCAAGTCAGAGGAAACACAAGAGTCTGCTAGAGATTTATTAGAAATATTAGCTGAAGGCAATCCTCGTTTCTCTGATCAAGTTTACAAAGGATTAATTGGTGTTTTACCATGTAATTCACCAAAAGCTCAACAATTAGCTCTTCAAAGTATA CGGATTTTACAGGCAAAGCGTAATACTGCCAATAGAGCCTTAATCGACAGAATAGTCTACTTACTGGAGTCATTACATTTGGAAGTACAATCAGCAGTTATTGAATTAGTTCGTGTTCTGATGGGATTCGATATTGTCGATGATATATTAATGGCCTTAATTACCTTGTTAAAACCTCAACATGAAATACAACTGGGCAAATTGTTTACAGAAGTAACATCAGATGATAACAATGATGAAATAAGTTCACCTCATATGGACAGTAATGAGGAAAGATATCCTTCTCATCCTGCCCCGTTAGGT] [+] EMBL CD184052 [TTCAAGCTCTTCATGTATTTTTATCAGCATCAAACAGGCTTTCGTGCTGTCGCTGAATGTATGGCCAAGTCCAAGTCAGAGGAAACACAAAAGTCTGCTAGAAATTTATTAAAATTATTAGGGGAGGGCATTCCTCTTTTTTCTGATCAAGTTAACAAAGGATTAATTGGTGTTTTACCATGTAATTCACCAAAAGCTCAACAATTAGCTCTTCAAAG ATACCCGATTTTACAGGCAAAGCGTAATACTGCCAATAGAGCCTTAATCGACAGAATAGTCTACTTACTGGAGTCATTACATNTGGAAGTACAATCAGCAng ] consensusID : consensus_8060#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACCGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTTCGTGCCAGTTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCGCGACACTTACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAAC] [+] EMBL CD071289 [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACCGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTTCGTGCCAGTTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCGCGACACTTACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8060#0 CCCGNAAGAGCCATAGGTAGGTGATAAATAAATGGTTATCTGGTCAACTAACCGTTGACT 60 consensus_8060#1 ------------------------------------------------------------ consensus_8060#2 ------------------------------------------------------------ consensus_8060#0 TCAATGAGAGAAGACTTATGGTCATTTCGATTGTTTGGTACAATATGAATTTTTGGAATG 120 consensus_8060#1 ------------------------------------------------------------ consensus_8060#2 ------------------------------------------------------------ consensus_8060#0 AAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGGTAGCTTT 180 consensus_8060#1 ------------------------------------------------------------ consensus_8060#2 ------------------------------------------------------------ consensus_8060#0 GGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACAT 240 consensus_8060#1 ------------------------------------------------------------ consensus_8060#2 ------------------------------------------------------------ consensus_8060#0 GACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTAT 300 consensus_8060#1 ----------------------------------------------TTCAAGCTCTTCAT 14 consensus_8060#2 ------------------------------------------------------------ consensus_8060#0 TAACCTACCTATGAACATACTACTTACTTG-ATTACCTATGAA-ACATGTACATATAGAA 358 consensus_8060#1 GTATTTTTATCAGCATCAAACAGGCATTCGTGCTGTCGCTGAATGTATGGCCAAGTCCAA 74 consensus_8060#2 ------------------------------------------------------------ consensus_8060#0 GTAACGTGAGTTGACACACGATTGGTTTCGATTGACAAACAA-ACTAACTAACTGCA--- 414 consensus_8060#1 GTCAGAGGAAAC-ACAAGAGTCTGCTAGAGATTTATTAGAAATATTAGCTGAAGGCAATC 133 consensus_8060#2 --------------------------------------------CCCGCCGTTTACC--- 13 * * consensus_8060#0 --TAGTTTTCTACATTTGTTTACATAATTTTGACTGTTTCTCTAATATGAACAGGTTCAT 472 consensus_8060#1 CTCGTTTCTCTGATCAAGTTTACAAAGGATTAATTGGTGTTTTACCATGTA---ATTCAC 190 consensus_8060#2 CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACCGGGCAGAAATCACATTGCG 73 ** * ** ** * ** consensus_8060#0 GTTAGACTGTTGAATAAACGCCATATATGATGATATTTTGTGAGAATACTTTTATTACCT 532 consensus_8060#1 CAAAAGCTCAACAATTAGCTCTTCAAAGTATACGGATTTTACAGGCAAAGCGTAATACTG 250 consensus_8060#2 TCAAAACCAATCAGTGGACATCGCAA--TGCTTTGTTTTAATTAGACAGTCGGATTCCCC 131 * * * * * * *** * * * * consensus_8060#0 TGTTCTATGACTGAATTAATT---TTGTCAATGAGTGGAAGAGATGAGGTGATCGGAACT 589 consensus_8060#1 CCAATAGAGCCTTAATCGACAGAATAGTCTACTTACTGGAGTCATTACAT--TTGGAAGT 308 consensus_8060#2 TGGTTCGTGCCAGTTCTGAGT---TAGCCGTCGCGCGCCAGAC----CAT----GGAAGT 180 * * * * * * ** * **** * consensus_8060#0 GAAGACA-TGATTGTTG-TTTATAGTCAATGGAATAATAATAATGAAGACAGT-GATGGT 646 consensus_8060#1 ACAATCAGCAGTTATTG-AAT-TAGTTCGTGTTCTGATGGGATTCGATATTGTCGATGAT 366 consensus_8060#2 ACAGCCG--GCTTGACGCAACGTGGAACATGTCCTCGCG-CGTTGCTAGCTGC-----GC 232 * * ** * * * ** * * * consensus_8060#0 AACATTAACATAAATAA--AACTGGTATGAAAGTTATCAGCGGATAGTGGTTGGCAAACT 704 consensus_8060#1 A-TATTAATGGCCTTAATTACCTTGTTAAAACCTCAACATGAAATACAACTGGGCAAATT 425 consensus_8060#2 GACACTTACAGCTGAAACCGCCC------ACGATCGACCCGGGTCAGAGTCCAGTAAC-- 284 * * * ** * * * * * * ** consensus_8060#0 AACTAACTAATTAACTGTACGTGTTA-TGAGGATGAGTTTGTTTTTTCTGCTTATTTGAC 763 consensus_8060#1 GTTTACAGAAGTAACATCAGATGATAACAATGATGAAATAAGTTCACCT-CATATGGACA 484 consensus_8060#2 ------------------------------------------------------------ consensus_8060#0 TTGGTTAATTTATATGGTCTGCTTACCTATTTCCTTGTTTCTTATTAATTGTGTACATGA 823 consensus_8060#1 GTAATGAGGAAAGATATCCTTCTCATC--CTGCCCCGTTAGGT----------------- 525 consensus_8060#2 ------------------------------------------------------------ consensus_8060#0 GAGATAGATAAGCATAGCATTGACTTTTGAAACAACTTCTGAATTGACTAGTAGTGAGCA 883 consensus_8060#1 ------------------------------------------------------------ consensus_8060#2 ------------------------------------------------------------ consensus_8060#0 AGAAGTTTTGTGAGAGGTTGAGAGTTGTTTAGTTTTGTTTTTTGTGGTGAGTCCAAANGA 943 consensus_8060#1 ------------------------------------------------------------ consensus_8060#2 ------------------------------------------------------------ consensus_8060#0 TTGGGC 949 consensus_8060#1 ------ consensus_8060#2 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||