cluster # 8061

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Schistosoma mansoni
cluster # 8061 cluster # 8061 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8061#0 length = 428 sequences # 1

consensus_8061#1 length = 419 sequences # 5

consensusID : consensus_8061#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [TAGGTATACGGTTCAGCTTTAGTGCATGGGATCCAAACGCGAGAGTTAATAAAACCCGACTCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCAGGAAAAACGGACGTGTTGTTTGTTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACGTTACGATGGTACTGGCTTGAATACACACAGTGGTTGCACTTATATCGCTTTGAAGTAAACGCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTACCACAAAGACTGCAATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTCGAAAGGCCAGGTCGACGACAAACAGGACTGGAATTCGGAGACATTTTTTCCGTTTCTTTTAAGAGTTGAGGATC]

[+] EMBL CD062555             [TAGGTATACGGTTCAGCTTTAGTGCATGGGATCCAAACGCGAGAGTTAATAAAACCCGACTCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCAGGAAAAACGGACGTGTTGTTTGTTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACGTTACGATGGTACTGGCTTGAATACACACAGTGGTTGCACTTATATCGCTTTGAAGTAAACGCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTACCACAAAGACTGCAATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTCGAAAGGCCAGGTCGACGACAAACAGGACTGGAATTCGGAGACATTTTTTCCGTTTCTTTTAAGAGTTGAGGATC]




>consensus_8061#0
TAGGTATACGGTTCAGCTTTAGTGCATGGGATCCAAACGCGAGAGTTAATAAAACCCGAC
TCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCAGGAAAAACGGAC
GTGTTGTTTGTTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACG
TTACGATGGTACTGGCTTGAATACACACAGTGGTTGCACTTATATCGCTTTGAAGTAAAC
GCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTA
CCACAAAGACTGCAATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTCGAAAGG
CCAGGTCGACGACAAACAGGACTGGAATTCGGAGACATTTTTTCCGTTTCTTTTAAGAGT
TGAGGATC

consensusID : consensus_8061#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 419
fasta sequence

                              [GATCTAGAGTATACCATCGGGATCCAAACGCGAGAGTTAATAAAACCCGACTCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCA-GGAAAAACGGACGTGTTGTTTG-TTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACGTTACGATGGTACTGGCTTGAATACACACAGTGGTTGCACTTATATCGCTTTGAAGTAAACGCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTACCACAAAGACTGCAATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTCGAAAG-GCCAGGTCGACGACAAACAGGACTGGAATTCGGAGACATTTTTTCCGTTTCTTTTAAGAGTTGAGGATC]

[+] EMBL CD061895             [GATCTAGAGTATACCATCGGGATCCAAACGCGAGAGTTAATAAAACCCGACTCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCA GGAAAAACGGACGTGTTGTTTG TTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACGTTACGATGGTACTGGCTTGAATACACACAGTGGTTGCACTTATATCGCTTTGAAGTAAACGCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTACCACAAAGACTGCAATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTCGAAAG GCCAGGTCGACGACAAACAGGACTGGAATTCGGAGACATTTTTTCCGTTTCTTTTAAGAGTTGAGGATC]
[-] EMBL CD062660             [                          AACGCGAGAGTTAATAAAACCCGGCTCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCA GGAAAAACGGACGTGTTGTTTG TTGAGAGTGTT                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD062390             [                      catcgACGCGAGAGTTAATAAAACCCGACTCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCACGGAAAAACGGACGTGTTGTTTG TTGAGAG                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD062493             [                               GAGAGTTAATAAAACCCGACTCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCA GGAAAAACGGACGTGTTGTTTG TTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACGTTACGATGGTACTGGCTTGAATACACACAGTGGTTGCACTTATATCGCTTTGAAGTAAACGCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTACCACAAAGACTGCGATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTCGAAAG GCCAGGTCGACGACAAACAGGACTGGAATTCGGAGACATTTTTTCCGTTTCTTTTAAGAGTTGAGatta]
[-] EMBL CD062473             [                                AGAGTTAAT AAACCCGACTCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGTACAGATCTCA GGAAATACGGACGTGTTGTTTGTTTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACGTTACGATGGTACTGGCTTGAATACACACAGTGTTTGCACTTATATCGCTTTGAAGTATACGCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTACCACAAAGACTGCAATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTGGGAAGTGCCA                                                                 ]




>consensus_8061#1
GATCTAGAGTATACCATCGGGATCCAAACGCGAGAGTTAATAAAACCCGACTCTAAGTCA
TCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCAGGAAAAACGGACGTGTTGTTT
GTTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACGTTACGATGG
TACTGGCTTGAATACACACAGTGGTTGCACTTATATCGCTTTGAAGTAAACGCTCCTGAT
GTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTACCACAAAGA
CTGCAATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTCGAAAGGCCAGGTCGA
CGACAAACAGGACTGGAATTCGGAGACATTTTTTCCGTTTCTTTTAAGAGTTGAGGATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8061#0      TAGGTATACGGTTCAGCTTTAGTGCATGGGATCCAAACGCGAGAGTTAATAAAACCCGAC 60
consensus_8061#1      ---------GATCTAGAGTATACCATCGGGATCCAAACGCGAGAGTTAATAAAACCCGAC 51
                               * *  **  *        *********************************

consensus_8061#0      TCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCAGGAAAAACGGAC 120
consensus_8061#1      TCTAAGTCATCAGAAGCGACTGAATCACACGGGGCGGAACAGATCTCAGGAAAAACGGAC 111
                      ************************************************************

consensus_8061#0      GTGTTGTTTGTTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACG 180
consensus_8061#1      GTGTTGTTTGTTGAGAGTGTTTCATGATCACGATGAGTTGCTTCCATGTGTTTGATAACG 171
                      ************************************************************

consensus_8061#0      TTACGATGGTACTGGCTTGAATACACACAGTGGTTGCACTTATATCGCTTTGAAGTAAAC 240
consensus_8061#1      TTACGATGGTACTGGCTTGAATACACACAGTGGTTGCACTTATATCGCTTTGAAGTAAAC 231
                      ************************************************************

consensus_8061#0      GCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTA 300
consensus_8061#1      GCTCCTGATGTATGCTTACGCATATGATTCCTTAGAGAAGCAACATGACGATATTGCTTA 291
                      ************************************************************

consensus_8061#0      CCACAAAGACTGCAATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTCGAAAGG 360
consensus_8061#1      CCACAAAGACTGCAATGGTGAGCAGCAGAAGGAGAGGAAGGGCCTGACCCCTTCGAAAGG 351
                      ************************************************************

consensus_8061#0      CCAGGTCGACGACAAACAGGACTGGAATTCGGAGACATTTTTTCCGTTTCTTTTAAGAGT 420
consensus_8061#1      CCAGGTCGACGACAAACAGGACTGGAATTCGGAGACATTTTTTCCGTTTCTTTTAAGAGT 411
                      ************************************************************

consensus_8061#0      TGAGGATC 428
consensus_8061#1      TGAGGATC 419
                      ********