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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8064#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 737 fasta sequence
[AGTTTTTTTTTTTTTTTTAATTACGCACTAAACATTTATTTAAACAATAATCAGTAGGTAATTTAAAATGAAAAGAAATGGAAACAGAATATCAAATATTCGGCACTATAATATATATTACAGATGTACAAAATGCAAATCAATCACGAATGAATACTTCCTAAAGCATG-ATAACCAGAAAGAATGAGATGTAATTATAGATGAAAAGATGAATCTGCAAAAAACTATTACACACAATCTTTACTAGAACTTTTCACTACAGTATCTGAATCAATTTCTTGAGACTTTGATTCTTCTTGAGGTTCATTTGGATCTTGAATAGCCAATCGAATACGAGAGAGAATAAAGCCCGGTGTAGTGTCTATGGCACGCTTACCATGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGTTATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAGGAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAATCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAAGCATATTTTCATAAATTCCCTGTACCCGCATTTTGCCACCTAAAGCAGCTTGGGAAAGTGAAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCCTCGTGCCGAATTTTTGGCCTNCGT]
[+] EMBL AI395577 [ TTTTTTTTTTTTTTTAATTACGCACTAAACATTTATTTAAACAATAATCAGTAGGTAATTTAAAATGAAAAGAAATGGAAACAGAATATCAAATATTCGGCACTATAATATATATTACAGATGTACAAAATGCAAATCAATCACGAATGAATACTTCCTAAAGCATG ATAACCAGAAAGAATGAGATGTAATTATAGATGAAAAGATGAATCTGCAAAAAACTATTACACACAATCTTTACTAGAACTTTTCACTACAGTATCTGAATCAATTTCTTGAGACTTTGATTCTTCTTGAGGTTCATTTGGATCTTGAATAGCCAATCGAATACGAGAGAGAATAAAGCCCGGTGTAGTGTCTATGGCACGCTTACCATGTTTGTCGGTCCACGTT ]
[+] EMBL CD076792 [agtgataaTTTACTGTATATTTACGCACTAAACATTTATTTAAACAATAATCAGTAGGTAATTTAAAATGAAAAGAAATGGAAACAGAATATCAAATATTCGGCACTATAATATATATTACAGATGTACAAAATGCAAATCAATCACGAATGAATACTTCCTAAAGCATG ATAACCAGAAAGAATGAGATGTAATTATAGATGAAAAGATGAATCTGCAAAAAACTATTACACACAATCTTTACTAGAACTTTTCACTACAGTATCTGAATCAATTTCTTGAGACTTTGATTCTTCTTGAGGTTCATTTGGATCTTGAATAGCCAATCGAATACGAGAGAGAATAAAGCCCGGTGTAGTGTCTATGGCACGCTTACCATGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGTTATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATC ]
[-] EMBL CD083221 [ ntAAGCATGNATAACCAGAAAGAATGAGATGTAATTATAGATGAAAAGATGAATCTGCAAANAACTATTACACACAATCTTTACTAGAACTTTTCACTACAGTATCTGAATCAATTTCTTGAGACTTTGATTCTTCTTGAGGTTCATTTGGATCTTGAATAGCCAATCGAATACGAGAGAGAATAAAGCCCGGTGTAGTGTCTATGGCACGCTTACCATGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGTTATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAGGAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAATCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAAGCATATTTTCATAAATTCCCTGTACCCGCATTTTGCCACCTAAAGCAGCTTGGGAAAGTGAAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCCTCGTGCCGAATTTTTGGCCTNCGT]
consensusID : consensus_8064#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 724 fasta sequence
[ACCTAAAAGCAGCTTGGGAAAGTGAAACCAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCTTTCTCCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGACCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGATACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTTCGAATACGAGAGAGAATAAAGCCGGNTGTAGTGTCTATGGCACGCTTACCATCTATTTTCTCAAACCCTTTAAGGTTGTATCACATAACCATTTGAGACCGTTAGTTATTCGACCCAAAACACCGGATGATTCCGTTTCCTCCCTACTATCAACCTGATTGTCCGAATGAAAGTCAGACGTATCTCTCGACTGTGTTTCCGAATTTCGGCCAAGCGTGTCTCGCAAATTTTCGTACAGTTGGCGAAGACGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGTTATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAGGAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAATCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAAGCATATTTTCATA]
[-] EMBL CD162510 [ACCTAAAAGCAGCTTGGGAAAGTGAAACCAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCTTTCTCCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGACCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGATACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTTCGAATACGAGAGAGAATAAAGCCGGNTGTAGTGTCTATGGCACGCTTACCATCTATTTTCTCAAACCCTTTAAGGTTGTATCACATAACCATTTGAGACCGTTAGTTATTCGACCCAAAACACCGGATGATTCCGTTTCCTCCCTACTATCAACCTGATTGTCCGAATGAAAGTCAGACGTATCTCTCGACTGTGTTTCCGAATTTCGGCCAAGCGTGTCTCGCAAATTTTCGTACAGTTGGCGAAGACGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGTTATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAGGAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAATCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAAGCATATTTTCATA]
consensusID : consensus_8064#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 444 fasta sequence
[CCTAAAGCAGCTTGGGAAAGTGAAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCTTTTCTCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGACCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGATACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTTCGAATAATGGTGCCGGTGCCATGGCATCGCCTACAAACACTCCGAAGCAAAAACGGTCCAGTATTCATGTTCTCAGTTCCTGTTCCACGACAACTTGGACAAGTGGACTTATCTGTCCCAGGTTCAGCACGTGTGCCTTGACAGTGTGGGCAATTAGTCACCATATTGACACTGATCTCCTTATTTACACCACGAGCAGCCTGTTCA]
[-] EMBL CD188491 [CCTAAAGCAGCTTGGGAAAGTGAAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCTTTTCTCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGACCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGATACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTTCGAATAATGGTGCCGGTGCCATGGCATCGCCTACAAACACTCCGAAGCAAAAACGGTCCAGTATTCATGTTCTCAGTTCCTGTTCCACGACAACTTGGACAAGTGGACTTATCTGTCCCAGGTTCAGCACGTGTGCCTTGACAGTGTGGGCAATTAGTCA ]
[+] EMBL CD111271 [ ACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCTTTTCTCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGACCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGATACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTTCGAATAATGGTGCCGGTGCCATGGCATCGCCTACAAACACTCCGAAGCAAAAACGGTCCAGTATTCATGTTCTCAGTTCCTGTTCCACGACAACTTGGACAAGTGGACTTATCTGTCCCAGGTTCAGCACGTGAGCCTTGACAGTGTGGGCAATTAGTCACCATATTGACACTGATCTCCTTATTTACACCACGAGCAGCCTGTTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8064#1 ACCTAAAAGCAGCTTGGGAAAGTGAAACCAGTGATGTCTGAGTGTATGTCCGCACCTTCA 60
consensus_8064#2 --CCTAAAGCAGCTTGGGAAAGTGAAAC-AGTGATGTCTGAGTGTATGTCCGCACCTTCA 57
consensus_8064#0 ------------------------------------------------------------
consensus_8064#1 CGACGAAAATGTCGGCTTTCTCCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGA 120
consensus_8064#2 CGACGAAAATGTCGGCTTTTCTCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGA 117
consensus_8064#0 -----AGTTTTTTTTTTTTTTTTAATTACGCACTAAACATTTATTTAAACAATAATCAGT 55
* * * *** * * * * ***** * ** ***
consensus_8064#1 CCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGAT 180
consensus_8064#2 CCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGAT 177
consensus_8064#0 AGGTAATTTAAAATGAAAAGAAATGGAAACAGAATATCAAATATTCG-GCACTATAATAT 114
** ** ** * * * ** * ** *** ** * *** **
consensus_8064#1 ACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTT 240
consensus_8064#2 ACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTT 237
consensus_8064#0 ATATT-ACAGATGTACAAAATGCAAATCAATC---ACGAATGAATACTTCCTAAAGCATG 170
* *** ** * *** *** * * * ** * ** ** ** * *
consensus_8064#1 CGAATACGAGAG-----AGAATAAAGCCGGNTGTAGTGTCTATGGCACGCTTACCATCTA 295
consensus_8064#2 CGAATAATGGTGCCGGTGCCATGGCATCGCCTACAAACACTCCGAAGCAAAAACGGTCCA 297
consensus_8064#0 ATAACCAGAAAG--AATGAGATGTAATTATAGATGAAAAG-ATGAATCTGCAAAAAACTA 227
** * ** * * * * *
consensus_8064#1 TTTTCTCAAACCCTT-TAAGGTTGTATCACATAACCATTTGAGACCGTTAGTTATTCGAC 354
consensus_8064#2 GTATTC---ATGTTC-TCAGTTCCTGTTCCACGACAACTTGGACAAGTGGACTTATCTGT 353
consensus_8064#0 TTACACACAATCTTTACTAGAACTTTTCACTACAGTATCTGAATCAAT---TTCTTGAGA 284
* * * ** * * * * * ** * * *
consensus_8064#1 CCAAAACACCGGATGAT-TCCGTTTCCTCCCTA--CTATCAACCTGATTGTCCGAATGAA 411
consensus_8064#2 CCCAGGTTCAGCACG---TGTGCCTTGACAGTG--TGGGCAAT-TAGTCACCATATTGAC 407
consensus_8064#0 CTTTGATTCTTCTTGAGGTTCATTTGGATCTTGAATAGCCAAT-CGAATACGAGAGAGA- 342
* * * * * * *** * **
consensus_8064#1 AGTCAGACGTATCTCTCGACTGTGTTTCCGAATTTCGGCCAAGCGTGTCTCGCAAATTTT 471
consensus_8064#2 ACTGATCTCCTTATTTACACCACGA----GCAGCCTGTTCA------------------- 444
consensus_8064#0 ATAAAGCCCGGTGTAGTGTCTATG-----GCACGCTTACCA------------------- 378
* * * * * * * * **
consensus_8064#1 CGTACAGTTGGCGAAGACGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGT 531
consensus_8064#2 ------------------------------------------------------------
consensus_8064#0 -----------------TGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGT 421
consensus_8064#1 TATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAG 591
consensus_8064#2 ------------------------------------------------------------
consensus_8064#0 TATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAG 481
consensus_8064#1 GAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAA 651
consensus_8064#2 ------------------------------------------------------------
consensus_8064#0 GAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAA 541
consensus_8064#1 TCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAA 711
consensus_8064#2 ------------------------------------------------------------
consensus_8064#0 TCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAA 601
consensus_8064#1 GCATATTTTCATA----------------------------------------------- 724
consensus_8064#2 ------------------------------------------------------------
consensus_8064#0 GCATATTTTCATAAATTCCCTGTACCCGCATTTTGCCACCTAAAGCAGCTTGGGAAAGTG 661
consensus_8064#1 ------------------------------------------------------------
consensus_8064#2 ------------------------------------------------------------
consensus_8064#0 AAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCCTCGTGCCG 721
consensus_8064#1 ----------------
consensus_8064#2 ----------------
consensus_8064#0 AATTTTTGGCCTNCGT 737
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||