These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8064#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 737 fasta sequence [AGTTTTTTTTTTTTTTTTAATTACGCACTAAACATTTATTTAAACAATAATCAGTAGGTAATTTAAAATGAAAAGAAATGGAAACAGAATATCAAATATTCGGCACTATAATATATATTACAGATGTACAAAATGCAAATCAATCACGAATGAATACTTCCTAAAGCATG-ATAACCAGAAAGAATGAGATGTAATTATAGATGAAAAGATGAATCTGCAAAAAACTATTACACACAATCTTTACTAGAACTTTTCACTACAGTATCTGAATCAATTTCTTGAGACTTTGATTCTTCTTGAGGTTCATTTGGATCTTGAATAGCCAATCGAATACGAGAGAGAATAAAGCCCGGTGTAGTGTCTATGGCACGCTTACCATGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGTTATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAGGAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAATCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAAGCATATTTTCATAAATTCCCTGTACCCGCATTTTGCCACCTAAAGCAGCTTGGGAAAGTGAAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCCTCGTGCCGAATTTTTGGCCTNCGT] [+] EMBL AI395577 [ TTTTTTTTTTTTTTTAATTACGCACTAAACATTTATTTAAACAATAATCAGTAGGTAATTTAAAATGAAAAGAAATGGAAACAGAATATCAAATATTCGGCACTATAATATATATTACAGATGTACAAAATGCAAATCAATCACGAATGAATACTTCCTAAAGCATG ATAACCAGAAAGAATGAGATGTAATTATAGATGAAAAGATGAATCTGCAAAAAACTATTACACACAATCTTTACTAGAACTTTTCACTACAGTATCTGAATCAATTTCTTGAGACTTTGATTCTTCTTGAGGTTCATTTGGATCTTGAATAGCCAATCGAATACGAGAGAGAATAAAGCCCGGTGTAGTGTCTATGGCACGCTTACCATGTTTGTCGGTCCACGTT ] [+] EMBL CD076792 [agtgataaTTTACTGTATATTTACGCACTAAACATTTATTTAAACAATAATCAGTAGGTAATTTAAAATGAAAAGAAATGGAAACAGAATATCAAATATTCGGCACTATAATATATATTACAGATGTACAAAATGCAAATCAATCACGAATGAATACTTCCTAAAGCATG ATAACCAGAAAGAATGAGATGTAATTATAGATGAAAAGATGAATCTGCAAAAAACTATTACACACAATCTTTACTAGAACTTTTCACTACAGTATCTGAATCAATTTCTTGAGACTTTGATTCTTCTTGAGGTTCATTTGGATCTTGAATAGCCAATCGAATACGAGAGAGAATAAAGCCCGGTGTAGTGTCTATGGCACGCTTACCATGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGTTATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATC ] [-] EMBL CD083221 [ ntAAGCATGNATAACCAGAAAGAATGAGATGTAATTATAGATGAAAAGATGAATCTGCAAANAACTATTACACACAATCTTTACTAGAACTTTTCACTACAGTATCTGAATCAATTTCTTGAGACTTTGATTCTTCTTGAGGTTCATTTGGATCTTGAATAGCCAATCGAATACGAGAGAGAATAAAGCCCGGTGTAGTGTCTATGGCACGCTTACCATGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGTTATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAGGAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAATCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAAGCATATTTTCATAAATTCCCTGTACCCGCATTTTGCCACCTAAAGCAGCTTGGGAAAGTGAAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCCTCGTGCCGAATTTTTGGCCTNCGT] consensusID : consensus_8064#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 724 fasta sequence [ACCTAAAAGCAGCTTGGGAAAGTGAAACCAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCTTTCTCCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGACCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGATACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTTCGAATACGAGAGAGAATAAAGCCGGNTGTAGTGTCTATGGCACGCTTACCATCTATTTTCTCAAACCCTTTAAGGTTGTATCACATAACCATTTGAGACCGTTAGTTATTCGACCCAAAACACCGGATGATTCCGTTTCCTCCCTACTATCAACCTGATTGTCCGAATGAAAGTCAGACGTATCTCTCGACTGTGTTTCCGAATTTCGGCCAAGCGTGTCTCGCAAATTTTCGTACAGTTGGCGAAGACGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGTTATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAGGAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAATCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAAGCATATTTTCATA] [-] EMBL CD162510 [ACCTAAAAGCAGCTTGGGAAAGTGAAACCAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCTTTCTCCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGACCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGATACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTTCGAATACGAGAGAGAATAAAGCCGGNTGTAGTGTCTATGGCACGCTTACCATCTATTTTCTCAAACCCTTTAAGGTTGTATCACATAACCATTTGAGACCGTTAGTTATTCGACCCAAAACACCGGATGATTCCGTTTCCTCCCTACTATCAACCTGATTGTCCGAATGAAAGTCAGACGTATCTCTCGACTGTGTTTCCGAATTTCGGCCAAGCGTGTCTCGCAAATTTTCGTACAGTTGGCGAAGACGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGTTATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAGGAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAATCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAAGCATATTTTCATA] consensusID : consensus_8064#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 444 fasta sequence [CCTAAAGCAGCTTGGGAAAGTGAAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCTTTTCTCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGACCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGATACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTTCGAATAATGGTGCCGGTGCCATGGCATCGCCTACAAACACTCCGAAGCAAAAACGGTCCAGTATTCATGTTCTCAGTTCCTGTTCCACGACAACTTGGACAAGTGGACTTATCTGTCCCAGGTTCAGCACGTGTGCCTTGACAGTGTGGGCAATTAGTCACCATATTGACACTGATCTCCTTATTTACACCACGAGCAGCCTGTTCA] [-] EMBL CD188491 [CCTAAAGCAGCTTGGGAAAGTGAAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCTTTTCTCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGACCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGATACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTTCGAATAATGGTGCCGGTGCCATGGCATCGCCTACAAACACTCCGAAGCAAAAACGGTCCAGTATTCATGTTCTCAGTTCCTGTTCCACGACAACTTGGACAAGTGGACTTATCTGTCCCAGGTTCAGCACGTGTGCCTTGACAGTGTGGGCAATTAGTCA ] [+] EMBL CD111271 [ ACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCTTTTCTCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGACCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGATACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTTCGAATAATGGTGCCGGTGCCATGGCATCGCCTACAAACACTCCGAAGCAAAAACGGTCCAGTATTCATGTTCTCAGTTCCTGTTCCACGACAACTTGGACAAGTGGACTTATCTGTCCCAGGTTCAGCACGTGAGCCTTGACAGTGTGGGCAATTAGTCACCATATTGACACTGATCTCCTTATTTACACCACGAGCAGCCTGTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8064#1 ACCTAAAAGCAGCTTGGGAAAGTGAAACCAGTGATGTCTGAGTGTATGTCCGCACCTTCA 60 consensus_8064#2 --CCTAAAGCAGCTTGGGAAAGTGAAAC-AGTGATGTCTGAGTGTATGTCCGCACCTTCA 57 consensus_8064#0 ------------------------------------------------------------ consensus_8064#1 CGACGAAAATGTCGGCTTTCTCCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGA 120 consensus_8064#2 CGACGAAAATGTCGGCTTTTCTCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGA 117 consensus_8064#0 -----AGTTTTTTTTTTTTTTTTAATTACGCACTAAACATTTATTTAAACAATAATCAGT 55 * * * *** * * * * ***** * ** *** consensus_8064#1 CCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGAT 180 consensus_8064#2 CCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGAT 177 consensus_8064#0 AGGTAATTTAAAATGAAAAGAAATGGAAACAGAATATCAAATATTCG-GCACTATAATAT 114 ** ** ** * * * ** * ** *** ** * *** ** consensus_8064#1 ACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTT 240 consensus_8064#2 ACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTT 237 consensus_8064#0 ATATT-ACAGATGTACAAAATGCAAATCAATC---ACGAATGAATACTTCCTAAAGCATG 170 * *** ** * *** *** * * * ** * ** ** ** * * consensus_8064#1 CGAATACGAGAG-----AGAATAAAGCCGGNTGTAGTGTCTATGGCACGCTTACCATCTA 295 consensus_8064#2 CGAATAATGGTGCCGGTGCCATGGCATCGCCTACAAACACTCCGAAGCAAAAACGGTCCA 297 consensus_8064#0 ATAACCAGAAAG--AATGAGATGTAATTATAGATGAAAAG-ATGAATCTGCAAAAAACTA 227 ** * ** * * * * * consensus_8064#1 TTTTCTCAAACCCTT-TAAGGTTGTATCACATAACCATTTGAGACCGTTAGTTATTCGAC 354 consensus_8064#2 GTATTC---ATGTTC-TCAGTTCCTGTTCCACGACAACTTGGACAAGTGGACTTATCTGT 353 consensus_8064#0 TTACACACAATCTTTACTAGAACTTTTCACTACAGTATCTGAATCAAT---TTCTTGAGA 284 * * * ** * * * * * ** * * * consensus_8064#1 CCAAAACACCGGATGAT-TCCGTTTCCTCCCTA--CTATCAACCTGATTGTCCGAATGAA 411 consensus_8064#2 CCCAGGTTCAGCACG---TGTGCCTTGACAGTG--TGGGCAAT-TAGTCACCATATTGAC 407 consensus_8064#0 CTTTGATTCTTCTTGAGGTTCATTTGGATCTTGAATAGCCAAT-CGAATACGAGAGAGA- 342 * * * * * * *** * ** consensus_8064#1 AGTCAGACGTATCTCTCGACTGTGTTTCCGAATTTCGGCCAAGCGTGTCTCGCAAATTTT 471 consensus_8064#2 ACTGATCTCCTTATTTACACCACGA----GCAGCCTGTTCA------------------- 444 consensus_8064#0 ATAAAGCCCGGTGTAGTGTCTATG-----GCACGCTTACCA------------------- 378 * * * * * * * * ** consensus_8064#1 CGTACAGTTGGCGAAGACGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGT 531 consensus_8064#2 ------------------------------------------------------------ consensus_8064#0 -----------------TGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGT 421 consensus_8064#1 TATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAG 591 consensus_8064#2 ------------------------------------------------------------ consensus_8064#0 TATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAG 481 consensus_8064#1 GAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAA 651 consensus_8064#2 ------------------------------------------------------------ consensus_8064#0 GAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAA 541 consensus_8064#1 TCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAA 711 consensus_8064#2 ------------------------------------------------------------ consensus_8064#0 TCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAA 601 consensus_8064#1 GCATATTTTCATA----------------------------------------------- 724 consensus_8064#2 ------------------------------------------------------------ consensus_8064#0 GCATATTTTCATAAATTCCCTGTACCCGCATTTTGCCACCTAAAGCAGCTTGGGAAAGTG 661 consensus_8064#1 ------------------------------------------------------------ consensus_8064#2 ------------------------------------------------------------ consensus_8064#0 AAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCCTCGTGCCG 721 consensus_8064#1 ---------------- consensus_8064#2 ---------------- consensus_8064#0 AATTTTTGGCCTNCGT 737 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||