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Schistosoma mansoni
cluster # 8064 cluster # 8064       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8064#0 length = 737 sequences # 3  
consensus_8064#1 length = 724 sequences # 1  
consensus_8064#2 length = 444 sequences # 2  

consensusID : consensus_8064#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 737
fasta sequence
                              [AGTTTTTTTTTTTTTTTTAATTACGCACTAAACATTTATTTAAACAATAATCAGTAGGTAATTTAAAATGAAAAGAAATGGAAACAGAATATCAAATATTCGGCACTATAATATATATTACAGATGTACAAAATGCAAATCAATCACGAATGAATACTTCCTAAAGCATG-ATAACCAGAAAGAATGAGATGTAATTATAGATGAAAAGATGAATCTGCAAAAAACTATTACACACAATCTTTACTAGAACTTTTCACTACAGTATCTGAATCAATTTCTTGAGACTTTGATTCTTCTTGAGGTTCATTTGGATCTTGAATAGCCAATCGAATACGAGAGAGAATAAAGCCCGGTGTAGTGTCTATGGCACGCTTACCATGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGTTATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAGGAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAATCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAAGCATATTTTCATAAATTCCCTGTACCCGCATTTTGCCACCTAAAGCAGCTTGGGAAAGTGAAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCCTCGTGCCGAATTTTTGGCCTNCGT]

[+] EMBL AI395577             [   TTTTTTTTTTTTTTTAATTACGCACTAAACATTTATTTAAACAATAATCAGTAGGTAATTTAAAATGAAAAGAAATGGAAACAGAATATCAAATATTCGGCACTATAATATATATTACAGATGTACAAAATGCAAATCAATCACGAATGAATACTTCCTAAAGCATG ATAACCAGAAAGAATGAGATGTAATTATAGATGAAAAGATGAATCTGCAAAAAACTATTACACACAATCTTTACTAGAACTTTTCACTACAGTATCTGAATCAATTTCTTGAGACTTTGATTCTTCTTGAGGTTCATTTGGATCTTGAATAGCCAATCGAATACGAGAGAGAATAAAGCCCGGTGTAGTGTCTATGGCACGCTTACCATGTTTGTCGGTCCACGTT                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD076792             [agtgataaTTTACTGTATATTTACGCACTAAACATTTATTTAAACAATAATCAGTAGGTAATTTAAAATGAAAAGAAATGGAAACAGAATATCAAATATTCGGCACTATAATATATATTACAGATGTACAAAATGCAAATCAATCACGAATGAATACTTCCTAAAGCATG ATAACCAGAAAGAATGAGATGTAATTATAGATGAAAAGATGAATCTGCAAAAAACTATTACACACAATCTTTACTAGAACTTTTCACTACAGTATCTGAATCAATTTCTTGAGACTTTGATTCTTCTTGAGGTTCATTTGGATCTTGAATAGCCAATCGAATACGAGAGAGAATAAAGCCCGGTGTAGTGTCTATGGCACGCTTACCATGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGTTATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATC                                                                                                                                                                                                                                                                              ]
[-] EMBL CD083221             [                                                                                                                                                                 ntAAGCATGNATAACCAGAAAGAATGAGATGTAATTATAGATGAAAAGATGAATCTGCAAANAACTATTACACACAATCTTTACTAGAACTTTTCACTACAGTATCTGAATCAATTTCTTGAGACTTTGATTCTTCTTGAGGTTCATTTGGATCTTGAATAGCCAATCGAATACGAGAGAGAATAAAGCCCGGTGTAGTGTCTATGGCACGCTTACCATGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGTTATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAGGAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAATCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAAGCATATTTTCATAAATTCCCTGTACCCGCATTTTGCCACCTAAAGCAGCTTGGGAAAGTGAAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCCTCGTGCCGAATTTTTGGCCTNCGT]


>consensus_8064#0 AGTTTTTTTTTTTTTTTTAATTACGCACTAAACATTTATTTAAACAATAATCAGTAGGTA ATTTAAAATGAAAAGAAATGGAAACAGAATATCAAATATTCGGCACTATAATATATATTA CAGATGTACAAAATGCAAATCAATCACGAATGAATACTTCCTAAAGCATGATAACCAGAA AGAATGAGATGTAATTATAGATGAAAAGATGAATCTGCAAAAAACTATTACACACAATCT TTACTAGAACTTTTCACTACAGTATCTGAATCAATTTCTTGAGACTTTGATTCTTCTTGA GGTTCATTTGGATCTTGAATAGCCAATCGAATACGAGAGAGAATAAAGCCCGGTGTAGTG TCTATGGCACGCTTACCATGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACG TTATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTA GGAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTA ATCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATA AGCATATTTTCATAAATTCCCTGTACCCGCATTTTGCCACCTAAAGCAGCTTGGGAAAGT GAAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCCTCGTGCC GAATTTTTGGCCTNCGT



consensusID : consensus_8064#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 724
fasta sequence
                              [ACCTAAAAGCAGCTTGGGAAAGTGAAACCAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCTTTCTCCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGACCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGATACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTTCGAATACGAGAGAGAATAAAGCCGGNTGTAGTGTCTATGGCACGCTTACCATCTATTTTCTCAAACCCTTTAAGGTTGTATCACATAACCATTTGAGACCGTTAGTTATTCGACCCAAAACACCGGATGATTCCGTTTCCTCCCTACTATCAACCTGATTGTCCGAATGAAAGTCAGACGTATCTCTCGACTGTGTTTCCGAATTTCGGCCAAGCGTGTCTCGCAAATTTTCGTACAGTTGGCGAAGACGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGTTATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAGGAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAATCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAAGCATATTTTCATA]

[-] EMBL CD162510             [ACCTAAAAGCAGCTTGGGAAAGTGAAACCAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCTTTCTCCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGACCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGATACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTTCGAATACGAGAGAGAATAAAGCCGGNTGTAGTGTCTATGGCACGCTTACCATCTATTTTCTCAAACCCTTTAAGGTTGTATCACATAACCATTTGAGACCGTTAGTTATTCGACCCAAAACACCGGATGATTCCGTTTCCTCCCTACTATCAACCTGATTGTCCGAATGAAAGTCAGACGTATCTCTCGACTGTGTTTCCGAATTTCGGCCAAGCGTGTCTCGCAAATTTTCGTACAGTTGGCGAAGACGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGTTATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAGGAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAATCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAAGCATATTTTCATA]


>consensus_8064#1 ACCTAAAAGCAGCTTGGGAAAGTGAAACCAGTGATGTCTGAGTGTATGTCCGCACCTTCA CGACGAAAATGTCGGCTTTCTCCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGA CCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGAT ACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTT CGAATACGAGAGAGAATAAAGCCGGNTGTAGTGTCTATGGCACGCTTACCATCTATTTTC TCAAACCCTTTAAGGTTGTATCACATAACCATTTGAGACCGTTAGTTATTCGACCCAAAA CACCGGATGATTCCGTTTCCTCCCTACTATCAACCTGATTGTCCGAATGAAAGTCAGACG TATCTCTCGACTGTGTTTCCGAATTTCGGCCAAGCGTGTCTCGCAAATTTTCGTACAGTT GGCGAAGACGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGTTATTTTCTG TCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAGGAGCTTGAA TATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAATCCCTTTAC CTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAAGCATATTTT CATA



consensusID : consensus_8064#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 444
fasta sequence
                              [CCTAAAGCAGCTTGGGAAAGTGAAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCTTTTCTCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGACCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGATACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTTCGAATAATGGTGCCGGTGCCATGGCATCGCCTACAAACACTCCGAAGCAAAAACGGTCCAGTATTCATGTTCTCAGTTCCTGTTCCACGACAACTTGGACAAGTGGACTTATCTGTCCCAGGTTCAGCACGTGTGCCTTGACAGTGTGGGCAATTAGTCACCATATTGACACTGATCTCCTTATTTACACCACGAGCAGCCTGTTCA]

[-] EMBL CD188491             [CCTAAAGCAGCTTGGGAAAGTGAAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCTTTTCTCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGACCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGATACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTTCGAATAATGGTGCCGGTGCCATGGCATCGCCTACAAACACTCCGAAGCAAAAACGGTCCAGTATTCATGTTCTCAGTTCCTGTTCCACGACAACTTGGACAAGTGGACTTATCTGTCCCAGGTTCAGCACGTGTGCCTTGACAGTGTGGGCAATTAGTCA                                               ]
[+] EMBL CD111271             [                        ACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCTTTTCTCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGACCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGATACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTTCGAATAATGGTGCCGGTGCCATGGCATCGCCTACAAACACTCCGAAGCAAAAACGGTCCAGTATTCATGTTCTCAGTTCCTGTTCCACGACAACTTGGACAAGTGGACTTATCTGTCCCAGGTTCAGCACGTGAGCCTTGACAGTGTGGGCAATTAGTCACCATATTGACACTGATCTCCTTATTTACACCACGAGCAGCCTGTTCA]


>consensus_8064#2 CCTAAAGCAGCTTGGGAAAGTGAAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGA CGAAAATGTCGGCTTTTCTCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGACCG TCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGATACA TTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTTCGA ATAATGGTGCCGGTGCCATGGCATCGCCTACAAACACTCCGAAGCAAAAACGGTCCAGTA TTCATGTTCTCAGTTCCTGTTCCACGACAACTTGGACAAGTGGACTTATCTGTCCCAGGT TCAGCACGTGTGCCTTGACAGTGTGGGCAATTAGTCACCATATTGACACTGATCTCCTTA TTTACACCACGAGCAGCCTGTTCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8064#1      ACCTAAAAGCAGCTTGGGAAAGTGAAACCAGTGATGTCTGAGTGTATGTCCGCACCTTCA 60
consensus_8064#2      --CCTAAAGCAGCTTGGGAAAGTGAAAC-AGTGATGTCTGAGTGTATGTCCGCACCTTCA 57
consensus_8064#0      ------------------------------------------------------------
                                                                                  

consensus_8064#1      CGACGAAAATGTCGGCTTTCTCCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGA 120
consensus_8064#2      CGACGAAAATGTCGGCTTTTCTCCACACGAATTTGCAGAAATATTTCGTTATTACGCAGA 117
consensus_8064#0      -----AGTTTTTTTTTTTTTTTTAATTACGCACTAAACATTTATTTAAACAATAATCAGT 55
                           *   * *    ***     *        *  * *  *****    * **  *** 

consensus_8064#1      CCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGAT 180
consensus_8064#2      CCGTCGTTACCAACGGACATTCGCAAAACCTGACCATCTTCTACCCCTGCAGGGATGGAT 177
consensus_8064#0      AGGTAATTTAAAATGAAAAGAAATGGAAACAGAATATCAAATATTCG-GCACTATAATAT 114
                        **  **   ** * * *       ** * **  ***   **  *  ***       **

consensus_8064#1      ACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTT 240
consensus_8064#2      ACATTGACTCGTTTACGTCCGACAATCCTACCTTTACCTTCGCATTCTCGACAAGGATTT 237
consensus_8064#0      ATATT-ACAGATGTACAAAATGCAAATCAATC---ACGAATGAATACTTCCTAAAGCATG 170
                      * *** **   * ***      ***  * * *   **    * ** **    ** *  * 

consensus_8064#1      CGAATACGAGAG-----AGAATAAAGCCGGNTGTAGTGTCTATGGCACGCTTACCATCTA 295
consensus_8064#2      CGAATAATGGTGCCGGTGCCATGGCATCGCCTACAAACACTCCGAAGCAAAAACGGTCCA 297
consensus_8064#0      ATAACCAGAAAG--AATGAGATGTAATTATAGATGAAAAG-ATGAATCTGCAAAAAACTA 227
                        **       *        **                     *   *    *    * *

consensus_8064#1      TTTTCTCAAACCCTT-TAAGGTTGTATCACATAACCATTTGAGACCGTTAGTTATTCGAC 354
consensus_8064#2      GTATTC---ATGTTC-TCAGTTCCTGTTCCACGACAACTTGGACAAGTGGACTTATCTGT 353
consensus_8064#0      TTACACACAATCTTTACTAGAACTTTTCACTACAGTATCTGAATCAAT---TTCTTGAGA 284
                       *       *   *    **    * *  *   *  *  **      *    *  *    

consensus_8064#1      CCAAAACACCGGATGAT-TCCGTTTCCTCCCTA--CTATCAACCTGATTGTCCGAATGAA 411
consensus_8064#2      CCCAGGTTCAGCACG---TGTGCCTTGACAGTG--TGGGCAAT-TAGTCACCATATTGAC 407
consensus_8064#0      CTTTGATTCTTCTTGAGGTTCATTTGGATCTTGAATAGCCAAT-CGAATACGAGAGAGA- 342
                      *       *     *   *     *      *       ***            *  ** 

consensus_8064#1      AGTCAGACGTATCTCTCGACTGTGTTTCCGAATTTCGGCCAAGCGTGTCTCGCAAATTTT 471
consensus_8064#2      ACTGATCTCCTTATTTACACCACGA----GCAGCCTGTTCA------------------- 444
consensus_8064#0      ATAAAGCCCGGTGTAGTGTCTATG-----GCACGCTTACCA------------------- 378
                      *   *      * *     *   *     * *       **                   

consensus_8064#1      CGTACAGTTGGCGAAGACGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGT 531
consensus_8064#2      ------------------------------------------------------------
consensus_8064#0      -----------------TGTTTGTCGGTCGACGTTACGCCTTCAACTGAACCAGTCACGT 421
                                                                                  

consensus_8064#1      TATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAG 591
consensus_8064#2      ------------------------------------------------------------
consensus_8064#0      TATTTTCTGTCTCGGCATAGGCTAGGAGAAGGGCGCGTTGAAGATCAGTTAGTTTCTTAG 481
                                                                                  

consensus_8064#1      GAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAA 651
consensus_8064#2      ------------------------------------------------------------
consensus_8064#0      GAGCTTGAATATGAATATGTATATAATGATCCCCATATCCATATCCATTGATCCGACTAA 541
                                                                                  

consensus_8064#1      TCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAA 711
consensus_8064#2      ------------------------------------------------------------
consensus_8064#0      TCCCTTTACCTGGCAATCGAATCCTATCATCACTGCAAGATCCAGCCGGAATAGTTATAA 601
                                                                                  

consensus_8064#1      GCATATTTTCATA----------------------------------------------- 724
consensus_8064#2      ------------------------------------------------------------
consensus_8064#0      GCATATTTTCATAAATTCCCTGTACCCGCATTTTGCCACCTAAAGCAGCTTGGGAAAGTG 661
                                                                                  

consensus_8064#1      ------------------------------------------------------------
consensus_8064#2      ------------------------------------------------------------
consensus_8064#0      AAACAGTGATGTCTGAGTGTATGTCCGCACCTTCACGACGAAAATGTCGGCCTCGTGCCG 721
                                                                                  

consensus_8064#1      ----------------
consensus_8064#2      ----------------
consensus_8064#0      AATTTTTGGCCTNCGT 737
                                      




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)