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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 575 fasta sequence
[TTAATAAACTAGAATCTACGATAAACTTAAACTACCATAAACATTAACAGTCCTATAAACATAAAGTAAATAACATAAACTAGTAAACCTTTTATACCCATTACTATAA-TACCTTTCCTGTCTAATAATGAATTTATAACTAAACCTAATACCATTAATCCTAACAATCTACCCCCAAACAAAATCATGACTGCTGATAAAATCAATACAAAATCCTGTCTTAATAAACTTATAACGGCCACTCCCACTTCTCCAAAAAACTGTAAAGTTGGGGGAAAACTCGATGCACCCATAAATACCATGACACTTACTACCTGAATGAAAATAACCGAACAAAATA-CAGGTGATAAAATTAATCATCTTCGAGACAATATGCACCTATAGCCTCATCATATAAATATAAACATTGCACTTACAGAACACCCATGACCATAAAGATACCAACAAACTAATTAAATCCGTATTATACTCACCAAAAATCAATATTACAACCCTCACCACTATATGTAACAAACTCAAAACAGCCAATCAACGCTTAGAATCAACTTCAGCATAAGCTCAACACATAAATACTA]
[+] EMBL AI977494 [TTAATAAACTAGAATCTACGATTAACTTAAACTACCATAAACACTAACAGTCCTATAAACATAAAGTAAATAACATAAACTAGTAAACCTTTTATACCCATTACTATAA TACCTTTCCTGTCTAATAATGAATTTATAACTAAACCTAATACCATTAATCCTAACAATCTACCCCCAAACAAAATCATGACTGCTGATAAAATCAATACAAAATCCTGTCTTAATAAACTTATAACGGCCACTCCCACTTCTCCAAAAAACTGTAAAGTTGGGGGAAAACTCGATGCACCCATAAATACCATGACACTTACTACCTGAATGAAAATAACCGAACAAAATA CAGGTGATAAAATTAATCAT ]
[+] EMBL SMT14487 [ AAACTAGANTCTACGATAAACTTAAACTACCATAAACATTAACAGTCCTATAAACATAAAGTAAATAACATAAACTAGTAAACCTTTTATACCCNTTACTATAANTACCTTTCCTGTCT ATAATGAATTTATAACTAAACCTAA ]
[+] EMBL BF936171 [ AACTAGAATCTACGATAAACTTAAACTACCATAAACATTAACAGTCCTATAAACATAAAGTAAATAACATAAACTAGTAAACCTTTTATACCCATTACTATAA TACCTTTCCTGTCTAATAATGAATTTATAACTAAACCTAATACCATTAATCCTAACAATCTACCCCCAAACAAAATCATGACTGCTGATAAAATCAATACAAAATCCTGTCTTAATAAACTTATAACGGCCACTCCCACTTCTCCAAAAAACTGTAAAGTTGGGGGAAAACTCGATGCACCCATAAATACCATGACACTTACTACCTGAATGAAAATAACCGAACAAAATACCAGTTGATAAAATTAATCATCTTCGAGACAATATGCACCTATAGCCTCATCATATAAATATAAACATTGCACTTACAGAACACCCATGACCATAAAGATACCAACAAACTAATTAAATCCGTATTATACTCACCAAAAATCAATATTACAACCCTCACCACTATATGTAACAAACTCAAAACAGCCAATCAACGCTTAGAATCAACTTCAGCATAAGCTCAACACATAAATACTA]
[-] EMBL SM268 [ CTAGAATCTACGATAAACTTAAACTACCATAAACATTAATAGTCCTATTAATATNAAGTAAATAACATAAACTANCAAACCTTTTAT ]
[+] EMBL SMT14520 [ GAATCTACGATAAACTTAAACTACCATAAACATTAACAGTCCTATAAACATAAAGTAAATAACATAAACTAGTAAACCTTTTATACCCATTACTATAA TACCTTTCCNGTCTAATAATGANTTTNTAACTAANCCTAATACCATTAATCCTAACANTCTACCNCCAAACAAAATCATGACTGCGGATAAANTCAATACAAAATCCTGTNTTAATAAACTTATNGCGGCCNCTCCCACTTCTCCAAAAAACTGTAAAGTTGGGGGAAAACTCGAT ]
consensusID : consensus_8067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence
[AACTAGAATCTNCGATAAACTTNAGCTACCATAANCATTNATAGTCCTATTAATATAAAGTAAATAACATAANCTAGCAAACCTTTTATACCCCTTACTATNACACCTTTCCTATCTAATAATGAATTNATAACTAAACCCAATACCATTAATCCTAGCAATCTACCCCCAAACAAAGTTATAACTGCTGATAAAATCAATACAAAATCCTGTCTTAATAGACTTATAACGGCCACTACCACTTCTCCAAAAAACTGTAAAGTTGGAGGAAAACTCGATACACCCATAAACACCACGACACTTACTGCCTGAATGAAAATAACTGAACAAAATACAGTTGATAAAATTA]
[-] EMBL SM663 [AACTAGAATCTNCGATAAACTTNAGCTACCATAANCATTNATAGTCCTATTAATATAAAGTAAATAACATAANCTAGCAAACCTTTTATACCCCTTACTATNACACCTTTCCTATCTAATAATGAATTNATAACTAAACCCAATACCATTAATCCTAGCAATCTACCCCCAAACAAAGTTATAACTGCTGATAAAATCAATACAAAATCCTGTCTTAATAGACTTATAACGGCCACTACCACTTCTCCAAAAAACTGTAAAGTTGGAGGAAAACTCGATACACCCATAAACACCACGACACTTACTGCCTGAATGAAAATAACTGAACAAAATACAGTTGATAAAATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8067#0 TTAATAAACTAGAATCTACGATAAACTTAAACTACCATAAACATTAACAGTCCTATAAAC 60
consensus_8067#1 ------AACTAGAATCTNCGATAAACTTNAGCTACCATAANCATTNATAGTCCTATTAAT 54
*********** ********** * ********* **** * ******** **
consensus_8067#0 ATAAAGTAAATAACATAAACTAGTAAACCTTTTATACCCATTACTATAATACCTTTCCTG 120
consensus_8067#1 ATAAAGTAAATAACATAANCTAGCAAACCTTTTATACCCCTTACTATNACACCTTTCCTA 114
****************** **** *************** ******* * *********
consensus_8067#0 TCTAATAATGAATTTATAACTAAACCTAATACCATTAATCCTAACAATCTACCCCCAAAC 180
consensus_8067#1 TCTAATAATGAATTNATAACTAAACCCAATACCATTAATCCTAGCAATCTACCCCCAAAC 174
************** *********** **************** ****************
consensus_8067#0 AAAATCATGACTGCTGATAAAATCAATACAAAATCCTGTCTTAATAAACTTATAACGGCC 240
consensus_8067#1 AAAGTTATAACTGCTGATAAAATCAATACAAAATCCTGTCTTAATAGACTTATAACGGCC 234
*** * ** ************************************* *************
consensus_8067#0 ACTCCCACTTCTCCAAAAAACTGTAAAGTTGGGGGAAAACTCGATGCACCCATAAATACC 300
consensus_8067#1 ACTACCACTTCTCCAAAAAACTGTAAAGTTGGAGGAAAACTCGATACACCCATAAACACC 294
*** **************************** ************ ********** ***
consensus_8067#0 ATGACACTTACTACCTGAATGAAAATAACCGAACAAAATACAGGTGATAAAATTAATCAT 360
consensus_8067#1 ACGACACTTACTGCCTGAATGAAAATAACTGAACAAAATACAGTTGATAAAATTA----- 349
* ********** **************** ************* ***********
consensus_8067#0 CTTCGAGACAATATGCACCTATAGCCTCATCATATAAATATAAACATTGCACTTACAGAA 420
consensus_8067#1 ------------------------------------------------------------
consensus_8067#0 CACCCATGACCATAAAGATACCAACAAACTAATTAAATCCGTATTATACTCACCAAAAAT 480
consensus_8067#1 ------------------------------------------------------------
consensus_8067#0 CAATATTACAACCCTCACCACTATATGTAACAAACTCAAAACAGCCAATCAACGCTTAGA 540
consensus_8067#1 ------------------------------------------------------------
consensus_8067#0 ATCAACTTCAGCATAAGCTCAACACATAAATACTA 575
consensus_8067#1 -----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||