These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 953 fasta sequence [ACTTGTTATCAAATGAATGATTATCTCATATATACAAACCAACTATTGAAATGACTTATGATCATTTGATAATTAAAACTGATTTAATTGATAATGATTGTTCAATCAAAGAAATTCATGGAAATCCCATTGTTACTAATGTCAATGATCAATGCATGAATAATAATAATGATGATGATGATGTTCATTCATGTTGTTTAATAAAAGAGATACAAGTTAATAAAATTGAAGATAATGGCATCTCTTCTAGTCAAAGTAAATTTGATCCTCAACTTAAACATGTACCATCATTACTACAACTGCCTACAATTCACTCTTCATCAGACAATAGTCAATTCAATAAGGATGAATTGAAGTGTGGAGAAAATGATTGTTCACAATCATCTATTTGTCAATTGAATGAATTCTTGCCACAGGAATGCAATAAACCATCATGTAGACCATCTCTTAATCGTAAATAATAATGATGCTAGAGCCCCACCTGCTCTAAATCAACTCATTTGGTAATGAACTCCAATTTAACGCCACCAACATTGATCAAAAAAATTTCGAAATCAATGAATAATAATCATAAGAGAAAACATAAAAGAAAGCGTGAATTAGATAATAATGGATTTATGTAAAAAAAATTTTCTTTTCTCTCTCTCTCACACACATATATTATGTGTATACTATCACAAGTTTAGCATGTTTTTTTTGTAAATGTATCTTTCCATGTTCTCTCTCTCTCCCTCTCCGCTCCCCTCTCTCTTTATCTTGTTTAAGTTCCCCCTCCCCTCTCCCTCCCTTTATCTTGTTTCTATTTTTAGGTTCTTATTCTTTCTCTATTTTGTGTATATGTATTTGTGTCAAGTACACTTTTGTGTTTATTTGTGTATACTATTGTTTATTCATGCCTTCTTTCCATATATTNTAATTATACATATCAGATCTGAGATATTATCTTAGTTACA] [-] EMBL CD197584 [ACTTGTTATCAAATGAATGATTATCTCATATATACAAACCAACTATTGAAATGACTTATGATCATTTGATAATTAAAACTGATTTAATTGATAATGATTGTTCAATCAAAGAAATTCATGGAAATCCCATTGTTACTAATGTCAATGATCAATGCATGAATAATAATAATGATGATGATGATGTTCATTCATGTTGTTTAATAAAAGAGATACAAGTTAATAAAATTGAAGATAATGGCATCTCTTCTAGTCAAAGTAAATTTGATCCTCAACTTAAACATGTACCATCATTACTACAACTGCCTACAATTCACTCTTCATCAGACAATAGTCAATTCAATAAGGATGAATTGAAGTGTGGAGAAAATGATTGTTCACAATCATCTATTTGTCAATTGAATGAATTCTTGCCACAGGAATGCAATAAACCATCATGTAGACCATCTCTTAATCGTAAATAATAATGATGCTAGAGCCCCACCTGCTCTAAATCAACT ] [+] EMBL CD082010 [ GACAATAGTCAATTCAATAAGGATGAATTGAAGTGTGGAGAAAATGATTGTTCACAATCATCTATTTGTCAATTGAATGAATTCTTGCCACAGGAATGCAATAAACCATCATGTAGACCATCTCTTAATC AAAATAATAATGAT CTAGAGCCCCACCT CTCTACATCAACTCATTTGGTAATGAACTCCAATTTAACGCCACCAACATTGATCAAAAAAATTTCGAAATCAATGAATAATAATCATAAGAGAAAACATAAAAGAAAGCGTGAATTAGATAATAATGGATTTATGTAAAAAAAATTTTCTTTTCTCTCTCTCTCACACACATATATTATGTGTATACTATCACAAGTTTAGCATGTTTTTTTTGTAAATGTATCTTTCCATGTTCTCTCTCTCTCCCTCTCCGCTCCCCTCTCTCTTTATCTTGTTTAAGTTCCCCCTCCCCTCTCCCTCCCTTTATCTTGTTTCTATTTTTAGGTTCTTATTCTTTCTCTATTTTGTGTATATGTATTTGTGTCAAGTACACTTTTGTGTTTATTTGTGTATACTATTGTTTATTCATGCCTTCTTTCCATATATTNTAATTATACATATCAGATCTGAGATATTATCTTAGTTACA] consensusID : consensus_8070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence [TCCCCTCTNTNTTTATCTTGTTAAGTTCCCCCCTCCCCTNTNCCNCCCCTNATCNNGTTCATNNNTAGGTTCTAATTCTTTCTCTATTTTGTGTATATGTANTGTGTCAAGNACACTTTTGTGTTTATTTGTGTAAACTATTGTTTATTCATGCCTTCTTTCCATATATTTTAATTATACATATCAGATCTGAGATATTATCTTAGTTACAAGAATCTGTTTTGTTATGTAATCTGTAGAAAAAACACTCTTCATGATCTTTATTCTTACTATTATCATCGAAATATTCAACATTCCATAATGAGATCTCTTAATGTATCACGTTTTGTTCTTCAATGTTGGGTTTTGTTAATTTGACCTAGTTAATAATCTGATCCATTCTACACTTTAGTTGTTGTTGTTGTTGAGGGGATGGTGAAGGATGTGTATAATTAACTTTATTTTCCTTTTCCTCCTCCTCCTCCTCCTCATCATCATCGTCATTTACTTTTTTGTGTTCTCATTTTGTGTAGGGTAATGGTCTTTGTTTATATTTTTTACAAATGCTGTTTTTTCGTGTTTTTTCTTTATATGTAAACATTTACTTCTTGTGTATTTGCAAGATTTCAGGGTGTTTTTGTTCTGTTATCAAAGAATAAGGAAAAACAAAGAAGTCCCCCTTATTCTTTTCAGAAATGATGTACAATTTAAGTGAATATCAATTTCATATATATCTTGTAAATTATATAATTC] [-] EMBL CD075625 [TCCCCTCTNTNTTTATCTTGTTAAGTTCCCCCCTCCCCTNTNCCNCCCCTNATCNNGTTCATNNNTAGGTTCTAATTCTTTCTCTATTTTGTGTATATGTANTGTGTCAAGNACACTTTTGTGTTTATTTGTGTAAACTATTGTTTATTCATGCCTTCTTTCCATATATTTTAATTATACATATCAGATCTGAGATATTATCTTAGTTACAAGAATCTGTTTTGTTATGTAATCTGTAGAAAAAACACTCTTCATGATCTTTATTCTTACTATTATCATCGAAATATTCAACATTCCATAATGAGATCTCTTAATGTATCACGTTTTGTTCTTCAATGTTGGGTTTTGTTAATTTGACCTAGTTAATAATCTGATCCATTCTACACTTTAGTTGTTGTTGTTGTTGAGGGGATGGTGAAGGATGTGTATAATTAACTTTATTTTCCTTTTCCTCCTCCTCCTCCTCCTCATCATCATCGTCATTTACTTTTTTGTGTTCTCATTTTGTGTAGGGTAATGGTCTTTGTTTATATTTTTTACAAATGCTGTTTTTTCGTGTTTTTTCTTTATATGTAAACATTTACTTCTTGTGTATTTGCAAGATTTCAGGGTGTTTTTGTTCTGTTATCAAAGAATAAGGAAAAACAAAGAAGTCCCCCTTATTCTTTTCAGAAATGATGTACAATTTAAGTGAATATCAATTTCATATATATCTTGTAAATTATATAATTC] consensusID : consensus_8070#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 362 fasta sequence [GAAAGCGTGAGTTAAATAATAATGGATCTATGTAAAAAAAATTTTCTTTTCTCTCTCTCTCACACACATATATTATNGTGTATACTATCACAAGTTTAGCATGTTTTTTTTGTAAATGTATCTTTCCATGTTCTCTCTCTCTGCCTCTCCGCTCCCCTCTCTCTTTATCTTGTTTAAGCTCCCCCTCCCCTCTCCCTCCCTTTATCTTGTTTCTATTTTTAGGTTCTTATTCTTTCTCTATTTTGTGTATATGTATTTGTGTCAAGTACACTTTTGTGTTTATTTGTGTATACTATTGTTTATTCATGCCT-TCTTTCCATATATTTTAATTATACATATCAGATGCGTAAATAAGGTAAATT] [+] EMBL CD082002 [GAAAGCGTGAGTTAAATAATAATGGATCTATGTAAAAAAAATTTTCTTTTCTCTCTCTCTCACACACATATATTATNGTGTATACTATCACAAGTTTAGCATGTTTTTTTTGTAAATGTATCTTTCCATGTTCTCTCTCTCTGCCTCTCCGCTCCCCTCTCTCTTTATCTTGTTTAAGCTCCCCCTCCCCTCTCCCTCCCTTTATCTTGTTTCTATTTTTAGGTTCTTATTCTTTCTCTATTTTGTGTATATGTATTTGCGTCAAGTACACTTTTGTGTTTATTTGAGTATACTATTGTTTATTCATGCCT TCTTT CATATATTTTAATT ] [-] EMBL CD152538 [ cgTCCCCTTTCCCTCCCTTTATCTTGTTTCTATTTTTAGGTTCTTATTCTTTCTCTATTTTGTGTATATGTATTTGTGTCAAGTACACTTTTGTGTTTATTTGTGTATAATATTGTTTATTCATGCCT TCTTTCAATATATTTTAGTTATACATATCAGATGCGTA ] [-] EMBL CD152537 [ GTATATGTATTTGTGTCAAGAACACTTTTGTGTTTATTTGTGTATACTATTGTTTATTCATGCCTCTCTTTCCATATATTTTAATTATACATATCAGATGGGTAAATAAGGTAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8070#0 ACTTGTTATCAAATGAATGATTATCTCATATATACAAACCAACTATTGAAATGACTTATG 60 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 ATCATTTGATAATTAAAACTGATTTAATTGATAATGATTGTTCAATCAAAGAAATTCATG 120 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ------------------------------------------------------------ consensus_8070#0 GAAATCCCATTGTTACTAATGTCAATGATCAATGCATGAATAATAATAATGATGATGATG 180 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 -------------------------------------------TCCCCTCTNTNTTTATC 17 consensus_8070#0 ATGTTCATTCATGTTGTTTAATAAAAGAGATACAAGTTAATAAAATTGAAGATAATGGCA 240 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 TTGTTAAGTTCCCCCCTCCCCTNTNCCNCCCCTNATCNNGTTCATNNNTAGGTTCTAATT 77 consensus_8070#0 TCTCTTCTAGTCAAAGTAAATTTGATCCTCAACTTAAACATGTACCATCATTACTACAAC 300 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 CTTTCTCTATTTTGTGTATATGTANTGTGTCAAGNACACTTTTGTGTTTATTTGTGTAAA 137 consensus_8070#0 TGCCTACAATTCACTCTTCATCAGACAATAGTCAATTCAATAAGGATGAATTGAAGTGTG 360 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 ---CTATTGTTTATTCATGCCTTCTTTCCATATATTTTAATTAT-ACATATCAGATCTGA 193 consensus_8070#0 GAGAAAATGATTGTTCACAATCATCTATTTGTCAATTGAATGAATTCTTGCCACAGGAAT 420 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 GATATTATC-TTAGTTACAAGAATCTGTTTT---GTTATGTAATCTGTAGAAAAAACACT 249 consensus_8070#0 GCAATAAACCATCATGTAGACCATCTCTTAATCGTAAATAATAATGATGCTAGAGCCCCA 480 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 CTTCATGATCTTTATTCTTACTATT--ATCATCG-AAATATTCAACATTCCATAATGAGA 306 consensus_8070#0 CCTGCTCTAAATCAACTCATTTGGTAATGAACTCCAATTTAACGCCACCAACATTGATCA 540 consensus_8070#2 ------------------------------------------------------------ consensus_8070#1 TCT--CTTAATGTATCACGTTTTGTTCTTCAAT---GTTGGGTTTTGTTAAT-TTGACCT 360 consensus_8070#0 AAAAAATTTCGAAATCAATGAATAATAATCATAAGAGAAAACATAAAAGAAAGCGTGAAT 600 consensus_8070#2 ------------------------------------------------GAAAGCGTGAGT 12 consensus_8070#1 AGTTAAT----AATCTGATCCATTCTACACTTTAG--------TTGTTGTTGTTGTTGAG 408 * ** consensus_8070#0 TAGATAATAATGGATTTATGTAAAAAAAATTTTCTTTTCTCTCTCTCTCACACACATATA 660 consensus_8070#2 TAAATAATAATGGATCTATGTAAAAAAAATTTTCTTTTCTCTCTCTCTCACACACATATA 72 consensus_8070#1 GGGATGGTGAAGGATGTGTATAATTAAC-TTTATTTTCCTTTTCCTCCTCCTCCTCCTCC 467 ** * * **** * * *** ** *** *** ** * *** * * consensus_8070#0 TTATG-TGTATACTATCACAAGTTTAGCATGTTTTTTTTGTAAATGTATCTTTCCATGTT 719 consensus_8070#2 TTATNGTGTATACTATCACAAGTTTAGCATGTTTTTTTTGTAAATGTATCTTTCCATGTT 132 consensus_8070#1 TCATCATCATCGTCATTTACTTTTTTGTGTTCTCATTTTGTGTAGGG------TAATGGT 521 * ** * ** *** * * * ****** * * *** * consensus_8070#0 CTCTCTCTCTCCCTCTCCGCTCCCCTCTCTCTTTATCTTGTTTAAGTTCCCCCTCCCCTC 779 consensus_8070#2 CTCTCTCTCTGCCTCTCCGCTCCCCTCTCTCTTTATCTTGTTTAAGCTCCCCCTCCCCTC 192 consensus_8070#1 CTTTGTTTATATTTTTTACAAATGCTGTTTTTTCGTGTTTTTT----------CTTTATA 571 ** * * * * * * ** * * ** * ** *** * consensus_8070#0 TCCCTCCCTTTATCTTGTTTCTATTTTTAGGTTCTTATTCTTTCTCTATTTTGTGTATAT 839 consensus_8070#2 TCCCTCCCTTTATCTTGTTTCTATTTTTAGGTTCTTATTCTTTCTCTATTTTGTGTATAT 252 consensus_8070#1 TGTAAACATTTACTTCTTGTGTATTTGCAAGATTTCAGGGTGTTTTTGTTCTGTTATCAA 631 * * **** * * * ***** * * * * * * * * * ** *** * consensus_8070#0 GTATTTGTGTCAAGTACACTTTTGTGTTTATTTGTGTATACTATTGTTTATTCATGCCTT 899 consensus_8070#2 GTATTTGTGTCAAGTACACTTTTGTGTTTATTTGTGTATACTATTGTTTATTCATGCCTT 312 consensus_8070#1 AGAATAAGGAAAAACAAAG----AAGTCCCCCT---TATTCTTTTCAGAAATGATGTACA 684 * * * ** * * ** * *** ** ** * * *** consensus_8070#0 CTTTCCATATATTNTAATTATACATATCAGATCTGAGATATTATCTTAGTTACA 953 consensus_8070#2 CTTTCCATATATTTTAATTATACATATCAGATGCGTAA-ATAAGGTAAATT--- 362 consensus_8070#1 ATTTAAGTGAATATCAATTTCATATAT---ATCTTGTAAATTATATAATTC--- 732 *** * ** **** * **** ** * ** * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||