cluster # 8070

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8070 cluster # 8070 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8070#0 length = 953 sequences # 2

consensus_8070#1 length = 732 sequences # 1
consensus_8070#2 length = 362 sequences # 3

consensusID : consensus_8070#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 953
fasta sequence

                              [ACTTGTTATCAAATGAATGATTATCTCATATATACAAACCAACTATTGAAATGACTTATGATCATTTGATAATTAAAACTGATTTAATTGATAATGATTGTTCAATCAAAGAAATTCATGGAAATCCCATTGTTACTAATGTCAATGATCAATGCATGAATAATAATAATGATGATGATGATGTTCATTCATGTTGTTTAATAAAAGAGATACAAGTTAATAAAATTGAAGATAATGGCATCTCTTCTAGTCAAAGTAAATTTGATCCTCAACTTAAACATGTACCATCATTACTACAACTGCCTACAATTCACTCTTCATCAGACAATAGTCAATTCAATAAGGATGAATTGAAGTGTGGAGAAAATGATTGTTCACAATCATCTATTTGTCAATTGAATGAATTCTTGCCACAGGAATGCAATAAACCATCATGTAGACCATCTCTTAATCGTAAATAATAATGATGCTAGAGCCCCACCTGCTCTAAATCAACTCATTTGGTAATGAACTCCAATTTAACGCCACCAACATTGATCAAAAAAATTTCGAAATCAATGAATAATAATCATAAGAGAAAACATAAAAGAAAGCGTGAATTAGATAATAATGGATTTATGTAAAAAAAATTTTCTTTTCTCTCTCTCTCACACACATATATTATGTGTATACTATCACAAGTTTAGCATGTTTTTTTTGTAAATGTATCTTTCCATGTTCTCTCTCTCTCCCTCTCCGCTCCCCTCTCTCTTTATCTTGTTTAAGTTCCCCCTCCCCTCTCCCTCCCTTTATCTTGTTTCTATTTTTAGGTTCTTATTCTTTCTCTATTTTGTGTATATGTATTTGTGTCAAGTACACTTTTGTGTTTATTTGTGTATACTATTGTTTATTCATGCCTTCTTTCCATATATTNTAATTATACATATCAGATCTGAGATATTATCTTAGTTACA]

[-] EMBL CD197584             [ACTTGTTATCAAATGAATGATTATCTCATATATACAAACCAACTATTGAAATGACTTATGATCATTTGATAATTAAAACTGATTTAATTGATAATGATTGTTCAATCAAAGAAATTCATGGAAATCCCATTGTTACTAATGTCAATGATCAATGCATGAATAATAATAATGATGATGATGATGTTCATTCATGTTGTTTAATAAAAGAGATACAAGTTAATAAAATTGAAGATAATGGCATCTCTTCTAGTCAAAGTAAATTTGATCCTCAACTTAAACATGTACCATCATTACTACAACTGCCTACAATTCACTCTTCATCAGACAATAGTCAATTCAATAAGGATGAATTGAAGTGTGGAGAAAATGATTGTTCACAATCATCTATTTGTCAATTGAATGAATTCTTGCCACAGGAATGCAATAAACCATCATGTAGACCATCTCTTAATCGTAAATAATAATGATGCTAGAGCCCCACCTGCTCTAAATCAACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD082010             [                                                                                                                                                                                                                                                                                                                                   GACAATAGTCAATTCAATAAGGATGAATTGAAGTGTGGAGAAAATGATTGTTCACAATCATCTATTTGTCAATTGAATGAATTCTTGCCACAGGAATGCAATAAACCATCATGTAGACCATCTCTTAATC AAAATAATAATGAT CTAGAGCCCCACCT CTCTACATCAACTCATTTGGTAATGAACTCCAATTTAACGCCACCAACATTGATCAAAAAAATTTCGAAATCAATGAATAATAATCATAAGAGAAAACATAAAAGAAAGCGTGAATTAGATAATAATGGATTTATGTAAAAAAAATTTTCTTTTCTCTCTCTCTCACACACATATATTATGTGTATACTATCACAAGTTTAGCATGTTTTTTTTGTAAATGTATCTTTCCATGTTCTCTCTCTCTCCCTCTCCGCTCCCCTCTCTCTTTATCTTGTTTAAGTTCCCCCTCCCCTCTCCCTCCCTTTATCTTGTTTCTATTTTTAGGTTCTTATTCTTTCTCTATTTTGTGTATATGTATTTGTGTCAAGTACACTTTTGTGTTTATTTGTGTATACTATTGTTTATTCATGCCTTCTTTCCATATATTNTAATTATACATATCAGATCTGAGATATTATCTTAGTTACA]




>consensus_8070#0
ACTTGTTATCAAATGAATGATTATCTCATATATACAAACCAACTATTGAAATGACTTATG
ATCATTTGATAATTAAAACTGATTTAATTGATAATGATTGTTCAATCAAAGAAATTCATG
GAAATCCCATTGTTACTAATGTCAATGATCAATGCATGAATAATAATAATGATGATGATG
ATGTTCATTCATGTTGTTTAATAAAAGAGATACAAGTTAATAAAATTGAAGATAATGGCA
TCTCTTCTAGTCAAAGTAAATTTGATCCTCAACTTAAACATGTACCATCATTACTACAAC
TGCCTACAATTCACTCTTCATCAGACAATAGTCAATTCAATAAGGATGAATTGAAGTGTG
GAGAAAATGATTGTTCACAATCATCTATTTGTCAATTGAATGAATTCTTGCCACAGGAAT
GCAATAAACCATCATGTAGACCATCTCTTAATCGTAAATAATAATGATGCTAGAGCCCCA
CCTGCTCTAAATCAACTCATTTGGTAATGAACTCCAATTTAACGCCACCAACATTGATCA
AAAAAATTTCGAAATCAATGAATAATAATCATAAGAGAAAACATAAAAGAAAGCGTGAAT
TAGATAATAATGGATTTATGTAAAAAAAATTTTCTTTTCTCTCTCTCTCACACACATATA
TTATGTGTATACTATCACAAGTTTAGCATGTTTTTTTTGTAAATGTATCTTTCCATGTTC
TCTCTCTCTCCCTCTCCGCTCCCCTCTCTCTTTATCTTGTTTAAGTTCCCCCTCCCCTCT
CCCTCCCTTTATCTTGTTTCTATTTTTAGGTTCTTATTCTTTCTCTATTTTGTGTATATG
TATTTGTGTCAAGTACACTTTTGTGTTTATTTGTGTATACTATTGTTTATTCATGCCTTC
TTTCCATATATTNTAATTATACATATCAGATCTGAGATATTATCTTAGTTACA

consensusID : consensus_8070#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 732
fasta sequence

                              [TCCCCTCTNTNTTTATCTTGTTAAGTTCCCCCCTCCCCTNTNCCNCCCCTNATCNNGTTCATNNNTAGGTTCTAATTCTTTCTCTATTTTGTGTATATGTANTGTGTCAAGNACACTTTTGTGTTTATTTGTGTAAACTATTGTTTATTCATGCCTTCTTTCCATATATTTTAATTATACATATCAGATCTGAGATATTATCTTAGTTACAAGAATCTGTTTTGTTATGTAATCTGTAGAAAAAACACTCTTCATGATCTTTATTCTTACTATTATCATCGAAATATTCAACATTCCATAATGAGATCTCTTAATGTATCACGTTTTGTTCTTCAATGTTGGGTTTTGTTAATTTGACCTAGTTAATAATCTGATCCATTCTACACTTTAGTTGTTGTTGTTGTTGAGGGGATGGTGAAGGATGTGTATAATTAACTTTATTTTCCTTTTCCTCCTCCTCCTCCTCCTCATCATCATCGTCATTTACTTTTTTGTGTTCTCATTTTGTGTAGGGTAATGGTCTTTGTTTATATTTTTTACAAATGCTGTTTTTTCGTGTTTTTTCTTTATATGTAAACATTTACTTCTTGTGTATTTGCAAGATTTCAGGGTGTTTTTGTTCTGTTATCAAAGAATAAGGAAAAACAAAGAAGTCCCCCTTATTCTTTTCAGAAATGATGTACAATTTAAGTGAATATCAATTTCATATATATCTTGTAAATTATATAATTC]

[-] EMBL CD075625             [TCCCCTCTNTNTTTATCTTGTTAAGTTCCCCCCTCCCCTNTNCCNCCCCTNATCNNGTTCATNNNTAGGTTCTAATTCTTTCTCTATTTTGTGTATATGTANTGTGTCAAGNACACTTTTGTGTTTATTTGTGTAAACTATTGTTTATTCATGCCTTCTTTCCATATATTTTAATTATACATATCAGATCTGAGATATTATCTTAGTTACAAGAATCTGTTTTGTTATGTAATCTGTAGAAAAAACACTCTTCATGATCTTTATTCTTACTATTATCATCGAAATATTCAACATTCCATAATGAGATCTCTTAATGTATCACGTTTTGTTCTTCAATGTTGGGTTTTGTTAATTTGACCTAGTTAATAATCTGATCCATTCTACACTTTAGTTGTTGTTGTTGTTGAGGGGATGGTGAAGGATGTGTATAATTAACTTTATTTTCCTTTTCCTCCTCCTCCTCCTCCTCATCATCATCGTCATTTACTTTTTTGTGTTCTCATTTTGTGTAGGGTAATGGTCTTTGTTTATATTTTTTACAAATGCTGTTTTTTCGTGTTTTTTCTTTATATGTAAACATTTACTTCTTGTGTATTTGCAAGATTTCAGGGTGTTTTTGTTCTGTTATCAAAGAATAAGGAAAAACAAAGAAGTCCCCCTTATTCTTTTCAGAAATGATGTACAATTTAAGTGAATATCAATTTCATATATATCTTGTAAATTATATAATTC]




>consensus_8070#1
TCCCCTCTNTNTTTATCTTGTTAAGTTCCCCCCTCCCCTNTNCCNCCCCTNATCNNGTTC
ATNNNTAGGTTCTAATTCTTTCTCTATTTTGTGTATATGTANTGTGTCAAGNACACTTTT
GTGTTTATTTGTGTAAACTATTGTTTATTCATGCCTTCTTTCCATATATTTTAATTATAC
ATATCAGATCTGAGATATTATCTTAGTTACAAGAATCTGTTTTGTTATGTAATCTGTAGA
AAAAACACTCTTCATGATCTTTATTCTTACTATTATCATCGAAATATTCAACATTCCATA
ATGAGATCTCTTAATGTATCACGTTTTGTTCTTCAATGTTGGGTTTTGTTAATTTGACCT
AGTTAATAATCTGATCCATTCTACACTTTAGTTGTTGTTGTTGTTGAGGGGATGGTGAAG
GATGTGTATAATTAACTTTATTTTCCTTTTCCTCCTCCTCCTCCTCCTCATCATCATCGT
CATTTACTTTTTTGTGTTCTCATTTTGTGTAGGGTAATGGTCTTTGTTTATATTTTTTAC
AAATGCTGTTTTTTCGTGTTTTTTCTTTATATGTAAACATTTACTTCTTGTGTATTTGCA
AGATTTCAGGGTGTTTTTGTTCTGTTATCAAAGAATAAGGAAAAACAAAGAAGTCCCCCT
TATTCTTTTCAGAAATGATGTACAATTTAAGTGAATATCAATTTCATATATATCTTGTAA
ATTATATAATTC

consensusID : consensus_8070#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 362
fasta sequence

                              [GAAAGCGTGAGTTAAATAATAATGGATCTATGTAAAAAAAATTTTCTTTTCTCTCTCTCTCACACACATATATTATNGTGTATACTATCACAAGTTTAGCATGTTTTTTTTGTAAATGTATCTTTCCATGTTCTCTCTCTCTGCCTCTCCGCTCCCCTCTCTCTTTATCTTGTTTAAGCTCCCCCTCCCCTCTCCCTCCCTTTATCTTGTTTCTATTTTTAGGTTCTTATTCTTTCTCTATTTTGTGTATATGTATTTGTGTCAAGTACACTTTTGTGTTTATTTGTGTATACTATTGTTTATTCATGCCT-TCTTTCCATATATTTTAATTATACATATCAGATGCGTAAATAAGGTAAATT]

[+] EMBL CD082002             [GAAAGCGTGAGTTAAATAATAATGGATCTATGTAAAAAAAATTTTCTTTTCTCTCTCTCTCACACACATATATTATNGTGTATACTATCACAAGTTTAGCATGTTTTTTTTGTAAATGTATCTTTCCATGTTCTCTCTCTCTGCCTCTCCGCTCCCCTCTCTCTTTATCTTGTTTAAGCTCCCCCTCCCCTCTCCCTCCCTTTATCTTGTTTCTATTTTTAGGTTCTTATTCTTTCTCTATTTTGTGTATATGTATTTGCGTCAAGTACACTTTTGTGTTTATTTGAGTATACTATTGTTTATTCATGCCT TCTTT CATATATTTTAATT                               ]
[-] EMBL CD152538             [                                                                                                                                                                                       cgTCCCCTTTCCCTCCCTTTATCTTGTTTCTATTTTTAGGTTCTTATTCTTTCTCTATTTTGTGTATATGTATTTGTGTCAAGTACACTTTTGTGTTTATTTGTGTATAATATTGTTTATTCATGCCT TCTTTCAATATATTTTAGTTATACATATCAGATGCGTA             ]
[-] EMBL CD152537             [                                                                                                                                                                                                                                                      GTATATGTATTTGTGTCAAGAACACTTTTGTGTTTATTTGTGTATACTATTGTTTATTCATGCCTCTCTTTCCATATATTTTAATTATACATATCAGATGGGTAAATAAGGTAAATT]




>consensus_8070#2
GAAAGCGTGAGTTAAATAATAATGGATCTATGTAAAAAAAATTTTCTTTTCTCTCTCTCT
CACACACATATATTATNGTGTATACTATCACAAGTTTAGCATGTTTTTTTTGTAAATGTA
TCTTTCCATGTTCTCTCTCTCTGCCTCTCCGCTCCCCTCTCTCTTTATCTTGTTTAAGCT
CCCCCTCCCCTCTCCCTCCCTTTATCTTGTTTCTATTTTTAGGTTCTTATTCTTTCTCTA
TTTTGTGTATATGTATTTGTGTCAAGTACACTTTTGTGTTTATTTGTGTATACTATTGTT
TATTCATGCCTTCTTTCCATATATTTTAATTATACATATCAGATGCGTAAATAAGGTAAA
TT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8070#0      ACTTGTTATCAAATGAATGATTATCTCATATATACAAACCAACTATTGAAATGACTTATG 60
consensus_8070#2      ------------------------------------------------------------
consensus_8070#1      ------------------------------------------------------------
                                                                                  

consensus_8070#0      ATCATTTGATAATTAAAACTGATTTAATTGATAATGATTGTTCAATCAAAGAAATTCATG 120
consensus_8070#2      ------------------------------------------------------------
consensus_8070#1      ------------------------------------------------------------
                                                                                  

consensus_8070#0      GAAATCCCATTGTTACTAATGTCAATGATCAATGCATGAATAATAATAATGATGATGATG 180
consensus_8070#2      ------------------------------------------------------------
consensus_8070#1      -------------------------------------------TCCCCTCTNTNTTTATC 17
                                                                                  

consensus_8070#0      ATGTTCATTCATGTTGTTTAATAAAAGAGATACAAGTTAATAAAATTGAAGATAATGGCA 240
consensus_8070#2      ------------------------------------------------------------
consensus_8070#1      TTGTTAAGTTCCCCCCTCCCCTNTNCCNCCCCTNATCNNGTTCATNNNTAGGTTCTAATT 77
                                                                                  

consensus_8070#0      TCTCTTCTAGTCAAAGTAAATTTGATCCTCAACTTAAACATGTACCATCATTACTACAAC 300
consensus_8070#2      ------------------------------------------------------------
consensus_8070#1      CTTTCTCTATTTTGTGTATATGTANTGTGTCAAGNACACTTTTGTGTTTATTTGTGTAAA 137
                                                                                  

consensus_8070#0      TGCCTACAATTCACTCTTCATCAGACAATAGTCAATTCAATAAGGATGAATTGAAGTGTG 360
consensus_8070#2      ------------------------------------------------------------
consensus_8070#1      ---CTATTGTTTATTCATGCCTTCTTTCCATATATTTTAATTAT-ACATATCAGATCTGA 193
                                                                                  

consensus_8070#0      GAGAAAATGATTGTTCACAATCATCTATTTGTCAATTGAATGAATTCTTGCCACAGGAAT 420
consensus_8070#2      ------------------------------------------------------------
consensus_8070#1      GATATTATC-TTAGTTACAAGAATCTGTTTT---GTTATGTAATCTGTAGAAAAAACACT 249
                                                                                  

consensus_8070#0      GCAATAAACCATCATGTAGACCATCTCTTAATCGTAAATAATAATGATGCTAGAGCCCCA 480
consensus_8070#2      ------------------------------------------------------------
consensus_8070#1      CTTCATGATCTTTATTCTTACTATT--ATCATCG-AAATATTCAACATTCCATAATGAGA 306
                                                                                  

consensus_8070#0      CCTGCTCTAAATCAACTCATTTGGTAATGAACTCCAATTTAACGCCACCAACATTGATCA 540
consensus_8070#2      ------------------------------------------------------------
consensus_8070#1      TCT--CTTAATGTATCACGTTTTGTTCTTCAAT---GTTGGGTTTTGTTAAT-TTGACCT 360
                                                                                  

consensus_8070#0      AAAAAATTTCGAAATCAATGAATAATAATCATAAGAGAAAACATAAAAGAAAGCGTGAAT 600
consensus_8070#2      ------------------------------------------------GAAAGCGTGAGT 12
consensus_8070#1      AGTTAAT----AATCTGATCCATTCTACACTTTAG--------TTGTTGTTGTTGTTGAG 408
                                                                      *     **    

consensus_8070#0      TAGATAATAATGGATTTATGTAAAAAAAATTTTCTTTTCTCTCTCTCTCACACACATATA 660
consensus_8070#2      TAAATAATAATGGATCTATGTAAAAAAAATTTTCTTTTCTCTCTCTCTCACACACATATA 72
consensus_8070#1      GGGATGGTGAAGGATGTGTATAATTAAC-TTTATTTTCCTTTTCCTCCTCCTCCTCCTCC 467
                         **  * * **** * * ***  **  ***  *** ** *  ***   * *       

consensus_8070#0      TTATG-TGTATACTATCACAAGTTTAGCATGTTTTTTTTGTAAATGTATCTTTCCATGTT 719
consensus_8070#2      TTATNGTGTATACTATCACAAGTTTAGCATGTTTTTTTTGTAAATGTATCTTTCCATGTT 132
consensus_8070#1      TCATCATCATCGTCATTTACTTTTTTGTGTTCTCATTTTGTGTAGGG------TAATGGT 521
                      * **  *       **      *** *  *  *  ******  * *         *** *

consensus_8070#0      CTCTCTCTCTCCCTCTCCGCTCCCCTCTCTCTTTATCTTGTTTAAGTTCCCCCTCCCCTC 779
consensus_8070#2      CTCTCTCTCTGCCTCTCCGCTCCCCTCTCTCTTTATCTTGTTTAAGCTCCCCCTCCCCTC 192
consensus_8070#1      CTTTGTTTATATTTTTTACAAATGCTGTTTTTTCGTGTTTTTT----------CTTTATA 571
                      ** * * * *   * *        ** * * **  * ** ***               * 

consensus_8070#0      TCCCTCCCTTTATCTTGTTTCTATTTTTAGGTTCTTATTCTTTCTCTATTTTGTGTATAT 839
consensus_8070#2      TCCCTCCCTTTATCTTGTTTCTATTTTTAGGTTCTTATTCTTTCTCTATTTTGTGTATAT 252
consensus_8070#1      TGTAAACATTTACTTCTTGTGTATTTGCAAGATTTCAGGGTGTTTTTGTTCTGTTATCAA 631
                      *     * ****  *  * * *****  * * * * *   * * * * ** ***    * 

consensus_8070#0      GTATTTGTGTCAAGTACACTTTTGTGTTTATTTGTGTATACTATTGTTTATTCATGCCTT 899
consensus_8070#2      GTATTTGTGTCAAGTACACTTTTGTGTTTATTTGTGTATACTATTGTTTATTCATGCCTT 312
consensus_8070#1      AGAATAAGGAAAAACAAAG----AAGTCCCCCT---TATTCTTTTCAGAAATGATGTACA 684
                        * *   *  **  * *       **     *   *** ** **    * * ***    

consensus_8070#0      CTTTCCATATATTNTAATTATACATATCAGATCTGAGATATTATCTTAGTTACA 953
consensus_8070#2      CTTTCCATATATTTTAATTATACATATCAGATGCGTAA-ATAAGGTAAATT--- 362
consensus_8070#1      ATTTAAGTGAATATCAATTTCATATAT---ATCTTGTAAATTATATAATTC--- 732
                       ***   *  **   ****  * ****   **     * ** *  * * *