cluster # 8075

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Schistosoma mansoni
cluster # 8075 cluster # 8075 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8075#0 length = 707 sequences # 5

consensus_8075#1 length = 611 sequences # 1

consensusID : consensus_8075#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 707
fasta sequence

                              [CTGTCACATGAGGCTACTCGTATGTCTTCAACAGGTTTAAAAGGTAGAATACAAGTTACTGAGGCTGTTGCTAAACGCCTAGAATCACGTTATATATTTGAATACCGTGGTGAAGTGTTTGTCAAGGGTAAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTAAGACGAAGGGATGATTATCGAGATAATTTCACTGAAATGTATATTGTCTGTTCGTTTGTGTTACTACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTTGATCAATAGAACAATTTAGAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTAACTGCACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTTTGTTATATTTCTTCTTCGCTTAATCATAATTTTTCAATAAACATAAGAATACTTTCGAGAAATAATCATATATTCAACATATTAGTTTACACCTGCAATCATCATTTTTCTGTCTTTGCCTTCCTTTATTATCGTCTTTCTACACAGTGATTATTATTGGTGTCATTATCGGGTTGGCTTTCATTTT-CTCATTTCAAACAAAC-TTCATCTACTGGGCATTTGTCCTAGACATCCATCGTCAATATTCTATTGGTACATTTAGAAATAATAATATAAATGTATTAAATTCTGTGTCTTTATAT]

[+] EMBL CD094397             [CTGTCACATGAGGCTACTCGTATGTCTTCAACAGGTTTAAAAGGTAGAATACAAGTTACTGAGGCTGTTGCTAAACGCCTAGAATCACGTTATATATTTGAATACCGTGGTGAAGTGTTTGTCAAGGGTAAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTAAGACGAAGGGATGATTATCGAGATAATTTCACTGAAATGTATATTGTCTGTTCGTTTGTGTTACTACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTTGATCAATAGAACAATTTAGAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTAACTGCACAAAAAAAATCCCTTAATGGATCTTTACATATACACATGTTTGTTATATTTCTTCTTCGCTTAATCATAATTTTTCAATAAACATAAGAATACTTTCGAGAAAT ATCATATATTCAACATATTAGTTTACACCTGCAATCATCATTTTTCTGTCTTTGCCCTTCTTTATTATCGNCTTTCTACACAGTGATTATTATTGGTGTCATTATCGGGTTGGCTTTCATTTT CTCATTTCAAACAAAC TTCATCTACTGGGCATT                                                                                  ]
[-] EMBL CD074797             [                                                                                                TTTGAATACCGTGGTGAAGTGTTTGTCAAGGGTAAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTAAGACGAAGGGATGATTATAGAGATAATTTCACTGAAATGTATATTGTCTGTTCGTTTGTGTTACAACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTTGATCAATAGAACAATTTAGAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTAACTGCACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTTTGTTATATTTCTTCTTCGCTTAATCATAATTTTTCAATAAACATAAGAATACTTTCCAGAAATAATCATATATTCAACATATTAGTTTACACCTGCAATCATCATTTTTCTGTCTTTGCCTTCCTTTATAATCGTCTTTCTACACAGTGATTATTATTGTTGTCATTATC GGTTTGCTTTCATTTTCCTCATTTCAAACAAACTTTCATTTACTGTGCATTTGTCCTAGACATCCATCGTCAATATTCTATTGGTACATTTAGAAATAATAATATAAATGTATTAAATTCTGTGTCTTTATAT]
[+] EMBL CD178879             [                                                                                                                                 AAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTAAGACGAAGGGATGATTATCGAGATAATTTCACTGAAATGTATATTGTCTGTTCGTTTGTGTTACTACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTTGATCAATAGAACAATTTAGAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTAACTGCACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTTTGTTATATTTCTTCTTCGCTTAATCATAATTTTTCAATAAACATAAGAATACTTTCGAGAAATAATCATATATTCAACATATTAGTTTACACCTGCAATCATCATCTT                                                                                                                                                                                                    ]
[-] EMBL CD122157             [                                                                                                                                        ATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTAAGACGAAGGGATGATTATCGAGATAATTTCACTGAAATGTATATTGTCTGTTCGTTTGTGTTACTACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTTGATCAATAGAACAATTTAGAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTAACTGCACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTTTGTTATATTTCTTCTTCGCTTAATCATAATTTTTCAATAAACATAAGAATACTTTCGAGAAATAATCATATATTCAACATATTAGTTTACACCTGCAATCATCA                                                                                                                                                                                                        ]
[-] EMBL CD187101             [                                                                                                                                                                                            GATTATCGAGATAATTTCACTGAAATGTATATTGTCTGTTCGTTTGTGTTACTACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTTGATCAATAGAACAATTTAGAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTAACTGCACAAAAAAAATCCCTTAATGGATCTTTACATATACACATGTTTGTTATATTTCTTCTTCGCTTAATCATAATTTTTCAATAAACATAAGAATACTTTCGAGAAATAATCATATATTCAACATATTAGTTTACACCTGCAATCATCATTTTTCTGTCTTTGCCTTCCTTTATTATCGT                                                                                                                                                                         ]




>consensus_8075#0
CTGTCACATGAGGCTACTCGTATGTCTTCAACAGGTTTAAAAGGTAGAATACAAGTTACT
GAGGCTGTTGCTAAACGCCTAGAATCACGTTATATATTTGAATACCGTGGTGAAGTGTTT
GTCAAGGGTAAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTAAGAC
GAAGGGATGATTATCGAGATAATTTCACTGAAATGTATATTGTCTGTTCGTTTGTGTTAC
TACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCA
CTTGATCAATAGAACAATTTAGAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTAAC
TGCACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTTTGTTATATTTCTTCT
TCGCTTAATCATAATTTTTCAATAAACATAAGAATACTTTCGAGAAATAATCATATATTC
AACATATTAGTTTACACCTGCAATCATCATTTTTCTGTCTTTGCCTTCCTTTATTATCGT
CTTTCTACACAGTGATTATTATTGGTGTCATTATCGGGTTGGCTTTCATTTTCTCATTTC
AAACAAACTTCATCTACTGGGCATTTGTCCTAGACATCCATCGTCAATATTCTATTGGTA
CATTTAGAAATAATAATATAAATGTATTAAATTCTGTGTCTTTATAT

consensusID : consensus_8075#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence

                              [CCTCCAGGCCAANAATTCGGCACGAGGCAGATGAACATTTGTGGGCACTGCTTGATTTTGCTTTGGATTCGCCAAATGTTCAATTTTCAATTTGAACTAAAAGTTGGTTATAATATTGGTGAAGTGACAGCTGGTGTTATTGGAACTACAAAACTATTATATGATATATGGGGTGATACTGTCAATGTGGCTAGTNNNNNNNNNNNNNNNNNNNNNNNNGGTAGAATACAAGTTACTGATGCTGTTGCTAAACGCCTAGAATCACGTTATATATTTGAATACCGTGGTGAAGTGTTTGTCAAGGGTAAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTNNNNNNNNNNNNNNNNNNNNGAGATAATTTCACTGAAATGTATATTGGCTGTTCGTTTGTGTTACTACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTTGATCAATAGAACAATTTACAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTNNNGGCACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTATGATATATTTCTTCTTCGCTTAATCATAA]

[+] EMBL CD080971             [CCTCCAGGCCAANAATTCGGCACGAGGCAGATGAACATTTGTGGGCACTGCTTGATTTTGCTTTGGATTCGCCAAATGTTCAATTTTCAATTTGAACTAAAAGTTGGTTATAATATTGGTGAAGTGACAGCTGGTGTTATTGGAACTACAAAACTATTATATGATATATGGGGTGATACTGTCAATGTGGCTAGTNNNNNNNNNNNNNNNNNNNNNNNNGGTAGAATACAAGTTACTGATGCTGTTGCTAAACGCCTAGAATCACGTTATATATTTGAATACCGTGGTGAAGTGTTTGTCAAGGGTAAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTNNNNNNNNNNNNNNNNNNNNGAGATAATTTCACTGAAATGTATATTGGCTGTTCGTTTGTGTTACTACTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTTGATCAATAGAACAATTTACAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTNNNGGCACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTATGATATATTTCTTCTTCGCTTAATCATAA]




>consensus_8075#1
CCTCCAGGCCAANAATTCGGCACGAGGCAGATGAACATTTGTGGGCACTGCTTGATTTTG
CTTTGGATTCGCCAAATGTTCAATTTTCAATTTGAACTAAAAGTTGGTTATAATATTGGT
GAAGTGACAGCTGGTGTTATTGGAACTACAAAACTATTATATGATATATGGGGTGATACT
GTCAATGTGGCTAGTNNNNNNNNNNNNNNNNNNNNNNNNGGTAGAATACAAGTTACTGAT
GCTGTTGCTAAACGCCTAGAATCACGTTATATATTTGAATACCGTGGTGAAGTGTTTGTC
AAGGGTAAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTNNNNNNNN
NNNNNNNNNNNNGAGATAATTTCACTGAAATGTATATTGGCTGTTCGTTTGTGTTACTAC
TGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACTT
GATCAATAGAACAATTTACAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTNNNGGC
ACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTATGATATATTTCTTCTTCG
CTTAATCATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8075#0      ------------------------------------------------------------
consensus_8075#1      CCTCCAGGCCAANAATTCGGCACGAGGCAGATGAACATTTGTGGGCACTGCTTGATTTTG 60
                                                                                  

consensus_8075#0      ------------------------------------------------------------
consensus_8075#1      CTTTGGATTCGCCAAATGTTCAATTTTCAATTTGAACTAAAAGTTGGTTATAATATTGGT 120
                                                                                  

consensus_8075#0      ----------------------------------------------------------CT 2
consensus_8075#1      GAAGTGACAGCTGGTGTTATTGGAACTACAAAACTATTATATGATATATGGGGTGATACT 180
                                                                                **

consensus_8075#0      GTCACATGAGGCTACTCGTATGTCTTCAACAGGTTTAAAAGGTAGAATACAAGTTACTGA 62
consensus_8075#1      GTCA-ATGTGGCTAGTNNNNNNNNNNNNNNNNNNNNNNNNGGTAGAATACAAGTTACTGA 239
                      **** *** ***** *                        ********************

consensus_8075#0      GGCTGTTGCTAAACGCCTAGAATCACGTTATATATTTGAATACCGTGGTGAAGTGTTTGT 122
consensus_8075#1      TGCTGTTGCTAAACGCCTAGAATCACGTTATATATTTGAATACCGTGGTGAAGTGTTTGT 299
                       ***********************************************************

consensus_8075#0      CAAGGGTAAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTAAGACGA 182
consensus_8075#1      CAAGGGTAAAGGTAATATGAAAACCTACTTATTAGTAAGCCGTCGAAATAGTTNNNNNNN 359
                      *****************************************************       

consensus_8075#0      AGGGATGATTATCGAGATAATTTCACTGAAATGTATATTGTCTGTTCGTTTGTGTTACTA 242
consensus_8075#1      NNNNNNNNNNNNNGAGATAATTTCACTGAAATGTATATTGGCTGTTCGTTTGTGTTACTA 419
                                   *************************** *******************

consensus_8075#0      CTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACT 302
consensus_8075#1      CTGGTACGGGTACTACTCATAACAATTTGGTCAGTTATAACGCCTTCGTTTCTGGTCACT 479
                      ************************************************************

consensus_8075#0      TGATCAATAGAACAATTTAGAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTAACTG 362
consensus_8075#1      TGATCAATAGAACAATTTACAAAATTTTAAAAAGTATGATCTGGATTTTTTACTTNNNGG 539
                      ******************* ***********************************    *

consensus_8075#0      CACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTTTGTTATATTTCTTCTTC 422
consensus_8075#1      CACAAAAAAGATCCCTTAATGGATCTTTACATATACACATGTATGATATATTTCTTCTTC 599
                      ****************************************** ** **************

consensus_8075#0      GCTTAATCATAATTTTTCAATAAACATAAGAATACTTTCGAGAAATAATCATATATTCAA 482
consensus_8075#1      GCTTAATCATAA------------------------------------------------ 611
                      ************                                                

consensus_8075#0      CATATTAGTTTACACCTGCAATCATCATTTTTCTGTCTTTGCCTTCCTTTATTATCGTCT 542
consensus_8075#1      ------------------------------------------------------------
                                                                                  

consensus_8075#0      TTCTACACAGTGATTATTATTGGTGTCATTATCGGGTTGGCTTTCATTTTCTCATTTCAA 602
consensus_8075#1      ------------------------------------------------------------
                                                                                  

consensus_8075#0      ACAAACTTCATCTACTGGGCATTTGTCCTAGACATCCATCGTCAATATTCTATTGGTACA 662
consensus_8075#1      ------------------------------------------------------------
                                                                                  

consensus_8075#0      TTTAGAAATAATAATATAAATGTATTAAATTCTGTGTCTTTATAT 707
consensus_8075#1      ---------------------------------------------