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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8079#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 584 fasta sequence
[CTTTCCGTACGGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCGAACGATGTGGCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACCACCGCCTCCACCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTGCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTTCGTTCACGCCTCCACATTGCATCGACTTGCTATATGGCCATAACCATGGTACTTATAGCACTGGGGAGCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCG]
[+] EMBL CD142615 [CTTTCCGTACGGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCGAACGATGTGGCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACCACCGCCTCCACCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCAC ]
[-] EMBL CD145912 [ ACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTGCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTTCGTTCACGCCTCCACATTGCATCGACTTGCTATATGGCCATAACCATGGTACTTATAGCACTGGGGAGCAGAACCTCCACTTTCCGTACAGTCTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCG]
consensusID : consensus_8079#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 517 fasta sequence
[TTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGTGGCGTGAAACTCTGGATTTACCGCTACCACCATGTCGTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGTAACGTCCACATTTGAAACAGTCGTCGGACATCTTAAGAATACACTAACAGAGCTTACACCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACCACCGCCTCCACCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCTTCTTTCTGGTCTGTCTCCACGGGTGGTGGGAGAAGATCTTCTAGTTGGTCTAGGCTTACGA]
[+] EMBL CD142596 [TTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGTGGCGTGAAACTCTGGATTTACCGCTACCACCATGTCGTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGTAACGTCCACATTTGAAACAGTCGTCGGACATCTTAAGAATACACTAACAGAGCTTACACCCTGACTCACCACAACTGTAACAACGCCCACCACCACCACCACCGCCTCCACCATTATAGCCACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCAC ]
[-] EMBL CD135008 [ ACTATCACCTCGCTGTCCGTCATTTGTACAATCTCGTGCAAAGTGTCCCGTCCCACCACAGTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCTTCTTTCTGGTCTGTCTCCACGGGTGGTGGGAGAAGATCTTCTAGTTGGTCTAGGCTTACGA]
consensusID : consensus_8079#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence
[GCGGTTTCGGCTTCCTGAAGTTCCCTTCTGGGTACCATTTTTGATACGAGGGACAGAAGAGACTTTTTTGCGCGAGTTTCTGGTTGTAACAGTCCTCTTTGGAGGATGTTCTTCCTCCTTAGTAGGGTGTGGGTCGGCAGTTTTAGGACTCACTTGGGCCTGCCTTGTGTCAATCTGCGTGTCGACAGATTGAGTTCTGACTGATGTATCCCGACCGCGCTTGCCGAGACACTTTTTTGCGGCATTTACTATTGAAATGGCCTCGGTTAGCAGGCTATTTCCATACACATCCATTTTTACTAAACCGCTTGAAAGCTGCAGGTGTTAGATTCGTGCAAACATCGTGGTACCAACCTTTGCACTCATCGCACTGCATGCCGCTATCAACAGGATATCGACATCCTGGGCGGTGGCAAATGCTTTTGTTNNNNNNNNNNNNNNNNNTAAGATGCGAAAGTGAGTGTTGA]
[+] EMBL CD080890 [GCGGTTTCGGCTTCCTGAAGTTCCCTTCTGGGTACCATTTTTGATACGAGGGACAGAAGAGACTTTTTTGCGCGAGTTTCTGGTTGTAACAGTCCTCTTTGGAGGATGTTCTTCCTCCTTAGTAGGGTGTGGGTCGGCAGTTTTAGGACTCACTTGGGCCTGCCTTGTGTCAATCTGCGTGTCGACAGATTGAGTTCTGACTGATGTATCCCGACCGCGCTTGCCGAGACACTTTTTTGCGGCATTTACTATTGAAATGGCCTCGGTTAGCAGGCTATTTCCATACACATCCATTTTTACTAAACCGCTTGAAAGCTGCAGGTGTTAGATTCGTGCAAACATCGTGGTACCAACCTTTGCACTCATCGCACTGCATGCCGCTATCAACAGGATATCGACATCCTGGGCGGTGGCAAATGCTTTTGTTNNNNNNNNNNNNNNNNNTAAGATGCGAAAGTGAGTGTTGA]
consensusID : consensus_8079#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence
[AAATTTACATGCTTTAAACGATGTACTTTGCCTTTAACCTGGCCATTTATTCGAAAAATGTTAGCACAATATGCAACATTTTTAGTTCTTTTTTAAAGAAAAATCCCCATTGGTATACTTATACCTTTAACTGATTGCAACAGCCTTTATTAATAATTTCATAGCCACTGAACGAACAAGAGGATATCTGAATTCAATAGCTTGGTGAATAACGTGCTAATGTGAATGGTGAAAGATACTGAGTTCAAGTCTTATTTTGAACATTAAAATTGAGATCTAGGTACATCCATATGAAAAGTCCTAAAATAAAACAAAATGAACATTCTAAATCTCAATGTCACTCATATTTTCAACTTTGCTAGAATTTAAATTCATTTAGTATTGCTTGCTTGAATCTTCCCATTGATGTTTTAGGACTGCAACTGGTCAGTCTCTTATTGACATATGTGCATACTGTGCGTA]
[+] EMBL CD091268 [AAATTTACATGCTTTAAACGATGTACTTTGCCTTTAACCTGGCCATTTATTCGAAAAATGTTAGCACAATATGCAACATTTTTAGTTCTTTTTTAAAGAAAAATCCCCATTGGTATACTTATACCTTTAACTGATTGCAACAGCCTTTATTAATAATTTCATAGCCACTGAACGAACAAGAGGATATCTGAATTCAATAGCTTGGTGAATAACGTGCTAATGTGAATGGTGAAAGATACTGAGTTCAAGTCTTATTTTGAACATTAAAATTGAGATCTAGGTACATCCATATGAAAAGTCCTAAAATAAAACAAAATGAACATTCTAAATCTCAATGTCACTCATATTTTCAACTTTGCTAGAATTTAAATTCATTTAGTATTGCTTGCTTGAATCTTCCCATTGATGTTTTAGGACTGCAACTGGTCAGTCTCTTATTGACATATGTGCATACTGTGCGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8079#0 ------------------------------------------------------------
consensus_8079#1 TTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGTGGCGTGAAACTCTGGATTTACCG 60
consensus_8079#3 ---------------------------------------------------AAATTTACA 9
consensus_8079#2 -----------------------------------------------------------G 1
consensus_8079#0 ------------------CTTTCCGTACGGTCTCTCGCGAAGTGACCATATTTATTACA- 41
consensus_8079#1 CTACCACCATGTCGTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGTAACGTCCACA- 119
consensus_8079#3 TGCTTTAAACGATGTACTTTGCCTTTAACCTGGCCATTTATTCGAAAAATGTTAGCACAA 69
consensus_8079#2 CGGTTTCGGCTTCCTGAAGTTCCCTTCTGGGTACCATTTTTGATACGAGGGACAGAAGAG 61
* * * * *
consensus_8079#0 TCTGTAGCATAGCGTGTCGCTATTATTATTTGGGCAGTTTCGAACGATGTGGCCTGACTC 101
consensus_8079#1 TTTGAAACAG---TCGTCGGACATCTTAAGAATACACTAACAGAGCTTACACCCTGACTC 176
consensus_8079#3 TATGCAACAT---TTTTAGTTCTTTTTTAAAGAAAAATCCCCATTGGTATACTTATACCT 126
consensus_8079#2 ACTTTTTTGC---GCGAGTTTCTGGTTGTAACAGTCCTCTTTGGAGGATGTTCTTCCTCC 118
* ** *
consensus_8079#0 ACCAC-AACTGTAACAACGCCCACCACCACCACCACCGCCTCCACCATTATAGCCACTAT 160
consensus_8079#1 ACCAC-AACTGTAACAACGCCCACCACCACCACCACCGCCTCCACCATTATAGCCACTAT 235
consensus_8079#3 TTAACTGATTGCAACAGCCTTTATTAATAATTTCATAGCCACTG--AACGAACAAGAGGA 184
consensus_8079#2 TTAGTAGGGTGTGG-GTCGGCAGTTTTAGGACTCACTTGGGCCTGCCTTGTGTCAATCTG 177
** * ** *
consensus_8079#0 CACCTCGCTGTCCGTCATT-TGTACAATCTCGTGCAAA-GTGTCCCGTCCCAC---CACA 215
consensus_8079#1 CACCTCGCTGTCCGTCATT-TGTACAATCTCGTGCAAA-GTGTCCCGTCCCAC---CACA 290
consensus_8079#3 TATCTGAAT-TCAATAGCT-TGGTGAATAACGTGCTAATGTGAATGGTGAAAGATACTGA 242
consensus_8079#2 CGTGTCGACAGATTGAGTTCTGACTGATGTATCCCGACCGCGCTTGCCGAGAC--ACTTT 235
* * ** ** * * * * * *
consensus_8079#0 GTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCC 275
consensus_8079#1 GTTGAAACATTTGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCC 350
consensus_8079#3 GTTCAAGT-CTTATTTTGAACATTAAAATTGAGATCTAGGTACATCCATATGAAAAGTCC 301
consensus_8079#2 TTTGCGGCATTTACTATTGAAATGGCCTCGGTTAGCAGGCTATTTCCATACACATCCATT 295
** ** * * * * * *
consensus_8079#0 TCGTCCGCCGCGATAACCTGCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCA 335
consensus_8079#1 TCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCA 410
consensus_8079#3 TAAAATAAAACAA-AATGAACATTCTAAATCTCAATGTCACTCATATTTTCAACTTTGCT 360
consensus_8079#2 TTTACTAAACCGC--TTGAAAGCTGCAGGTGTTAG----ATTCGTGCAAACATCGTGGTA 349
* * * * * ** * * *
consensus_8079#0 ATCGCGAGCATAATGACCGGGACGTCC-ACATTTGAAACAGTCGTCCGACATCTTAAGAA 394
consensus_8079#1 ATCGCGAGCATAATGACCGGGACGTCC-ACATTTGAAACAGTCGTCT--TCTTTCTGGTC 467
consensus_8079#3 A--GAATTTAAATTCATTTAGTATTGC-TTGCTTGAATCTTCCCATTGATGTTTTAGGAC 417
consensus_8079#2 CCAACCTTTGCACTCATCGCACTGCATGCCGCTATCAACAGGATATCGACATCCT-GGGC 408
* * * * * * * *
consensus_8079#0 TACACTAACAGACCTTACACCCTGACTTCGTTCACGCCTCCACATTGCATCGACTTGCTA 454
consensus_8079#1 TGTCTCCACGGGTGGTGGGAGAAGATCTTCTAGTTGGTCTAGGCTTACGA---------- 517
consensus_8079#3 TGCAAC--TGGTCAGTCTCTTATTGACATATGTGCATACTGTGCGTA------------- 462
consensus_8079#2 GGTGGCAAATGCTTTTGTTNNNNNNNNNNNNNNNNNTAAGATGCGAAAGTGAGTGTTGA- 467
* *
consensus_8079#0 TATGGCCATAACCATGGTACTTATAGCACTGGGGAGCAGAACCTCCACTTTCCGTACAGT 514
consensus_8079#1 ------------------------------------------------------------
consensus_8079#3 ------------------------------------------------------------
consensus_8079#2 ------------------------------------------------------------
consensus_8079#0 CTCTCGCGAAGTGACCATATTTATTACATCTGTAGCATAGCGTGTCGCTATTATTATTTG 574
consensus_8079#1 ------------------------------------------------------------
consensus_8079#3 ------------------------------------------------------------
consensus_8079#2 ------------------------------------------------------------
consensus_8079#0 GGCAGTTTCG 584
consensus_8079#1 ----------
consensus_8079#3 ----------
consensus_8079#2 ----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||