cluster # 8082

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Schistosoma mansoni
cluster # 8082 cluster # 8082 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8082#0 length = 630 sequences # 4

consensus_8082#1 length = 564 sequences # 1
consensus_8082#2 length = 405 sequences # 1

consensusID : consensus_8082#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 630
fasta sequence

                              [ATTTCACCAAGAGCATCATGTTGTATGGCATCTTCCAGTCAAACGCACAATTTTCAGTATGGTTCACCTGTTTTGACAGAAGTAGCTTATAGCCCAATATCCATGTCCCAACAGAAAATTAATTCCGAACTACAAGTCAATAATCGTTCATTATTTTCTTCCAGTAATAGTGGTTCATTGATTACGACAACGACTACTGTTGGTGCTGGTACTGTTACATCGTCGGTGAATTTGTCGTACGTTGAAATTCGATCTTCACAACCACGAACTGAGAGTTTATTAGTTCGTTTACTTCACCCAGCAAAAAATCACTCTGTTGGACATCATACAGATATGAATACTTCTGATGGGGGACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGTGACCTCTCAACTTGTTCCAGATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAATCAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTCTCTAGATAATCTATGCAATAATCAACCAACAACANATTCTAGTAAACGATGTCGTAGTGGTCCTGCAACTACACAATCAATTTCATCACCATTTAGT]

[-] EMBL CD201197             [ATTTCACCAAGAGCATCATGTTGTATGGCATCTTCCAGTCAAACGCACAATTTTCAGTATGGTTCACCTGTTTTGACAGAAGTAGCTTATAGCCCAATATCCATGTCCCAACAGAAAATTAACTCCGAACTACAAGTCAATAATCGTTCATTATTTTCTTCCAGTAATAGTGGTTCATTGATTACGACAACGACTACTGTTGGTGCTGGTACTGTTACATCGTCGGTGAATTTGTCGTACGTTGAGATTCGATCTTCACAACCACGAACTGAGAGTTTATTAGTTCGTTTACTTCACCCAGCAAAAAATCACTCTGTTGGACATCATACAGATATGAACACTTCTGATGGGGGACATTTACTGA                                                                                                                                                                                                                                                                          ]
[+] EMBL CD116722             [   TCACCAAGAGCATCATGTTGTATGGCATCTTCCAGTCAAACGCACAATTTTCAGTATGGTTCACCTGTTTTGACAGAAGTAGCTTATAGCCCAATATCCATGTCCCAACAGAAAATTAATTCCGAACTACAAGTCAATAATCGTTCTTTATTTTCTTCCAGTAATAGTGGTTCATTGATTACGACAACGACTACTGTTGGTGCTGGTACTGTTACATCGTCGGTGAATTTGTCGTACGTTGAAATTCGATCTTCACAACCACGAACTGAGAGTTTATTAGTTCGTTTACTTCACCCAGCAAAAAATCACTCTGTTGGACATCATACAGATATGAATACTTCTGATGGGGGACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGTGACCTCTCAACTTGTTCCAGATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAATCAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTCTCTAGATAATCTATGCAATAATCAACCAACAACANATTCTAGTAAACGATGTCGTAGTGG                                     ]
[-] EMBL CD112676             [                                         AACGCACAATTTTCAGTATGGTTCACCTGTTTTGACAGAAGTAGCTTATAGCCCAATATCCGTGTCCCAACAGAAAATTAATTCCGAACTACAAGTCAATAATCGTTCATTATTTTCTTCCAGTAATAGTGGTTCATTGATTACGACAACGACTACTGTTGGTGCTGGTACTGTTACATCGTCGGTGAATTTGTCGTACGTTGAAATTCGATCTTCACAACCACGAACTGAGAGTTTATTAGTTCGTTTACTTCACCCAGCAAAAAATCACTCTGTTGGACATCATACAGATATGAATACTTCTGATGGGGGACATTTACTGAAGTTATCCTCTCCAACATTACCA                                                                                                                                                                                                                                                   ]
[+] EMBL CD123093             [                                                                                                                                                                                                                                                                  cgACCACGAACTGAGAGTTTATTAGTTCGTTTACTTCACCCAGCAAAAAATCACTCTGTTGGACATCATACAGATATGAATACTTCTGATGGGGGACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGTGACCTCTCAACTTGTTCCAGATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAATCAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTCTCTAGATAATCTATGCAATAATCAACCAACAACAAATTCTAGTAAACGATGTCGTAGTGGTCCTGCAACTACACAATCAATTTCATCACCATTTAGT]




>consensus_8082#0
ATTTCACCAAGAGCATCATGTTGTATGGCATCTTCCAGTCAAACGCACAATTTTCAGTAT
GGTTCACCTGTTTTGACAGAAGTAGCTTATAGCCCAATATCCATGTCCCAACAGAAAATT
AATTCCGAACTACAAGTCAATAATCGTTCATTATTTTCTTCCAGTAATAGTGGTTCATTG
ATTACGACAACGACTACTGTTGGTGCTGGTACTGTTACATCGTCGGTGAATTTGTCGTAC
GTTGAAATTCGATCTTCACAACCACGAACTGAGAGTTTATTAGTTCGTTTACTTCACCCA
GCAAAAAATCACTCTGTTGGACATCATACAGATATGAATACTTCTGATGGGGGACATTTA
CTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGTGACCTCTCAACTTGTTCCA
GATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAATCAATAAT
TTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTCTCTAGAT
AATCTATGCAATAATCAACCAACAACANATTCTAGTAAACGATGTCGTAGTGGTCCTGCA
ACTACACAATCAATTTCATCACCATTTAGT

consensusID : consensus_8082#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [CGAACTAATAAACTCTCAGTTCGTGGTTGTGAAGATCGAATTTCAACGTACGACAAATTCACCGACGATGTAACAGTACCAGCACCAACAGTAATCGTTGTCGTAATCAATGAACCACTATTACTGGAAGAAAATAATGAACGATTATTGACTTGTAGTTCGGAATTAATTTTCTGTTGGGACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGTGACCTCTCAACTTGTTCCAGATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAATCAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTCTCTAGATAATCTATGCAATAATCAACCAACAACAAATTCTAGTAAACGATGTCGTAGTGGTCCTGCAACTACACAATCAATTTCATCACCATTTAGTCCACATATATCACCCGGTAATAAACGAACTCGACATGCTTCACAATTTGAAGAAGTTCCTTCGCCTAGTATAAGAAAAAATTCTGGTATATCTGAAGCACAAAATC]

[+] EMBL CD200990             [CGAACTAATAAACTCTCAGTTCGTGGTTGTGAAGATCGAATTTCAACGTACGACAAATTCACCGACGATGTAACAGTACCAGCACCAACAGTAATCGTTGTCGTAATCAATGAACCACTATTACTGGAAGAAAATAATGAACGATTATTGACTTGTAGTTCGGAATTAATTTTCTGTTGGGACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGTGACCTCTCAACTTGTTCCAGATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAATCAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTCTCTAGATAATCTATGCAATAATCAACCAACAACAAATTCTAGTAAACGATGTCGTAGTGGTCCTGCAACTACACAATCAATTTCATCACCATTTAGTCCACATATATCACCCGGTAATAAACGAACTCGACATGCTTCACAATTTGAAGAAGTTCCTTCGCCTAGTATAAGAAAAAATTCTGGTATATCTGAAGCACAAAATC]




>consensus_8082#1
CGAACTAATAAACTCTCAGTTCGTGGTTGTGAAGATCGAATTTCAACGTACGACAAATTC
ACCGACGATGTAACAGTACCAGCACCAACAGTAATCGTTGTCGTAATCAATGAACCACTA
TTACTGGAAGAAAATAATGAACGATTATTGACTTGTAGTTCGGAATTAATTTTCTGTTGG
GACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGTGACCTCTCAAC
TTGTTCCAGATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAA
TCAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTT
CTCTAGATAATCTATGCAATAATCAACCAACAACAAATTCTAGTAAACGATGTCGTAGTG
GTCCTGCAACTACACAATCAATTTCATCACCATTTAGTCCACATATATCACCCGGTAATA
AACGAACTCGACATGCTTCACAATTTGAAGAAGTTCCTTCGCCTAGTATAAGAAAAAATT
CTGGTATATCTGAAGCACAAAATC

consensusID : consensus_8082#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [GGGCCGGCCCGGTCTGGGGGGACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGAGACCTCTCAACTTGTTCCAAATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAATCAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTCTCTAGATAATCTATGCAATAATCAACCAACAACAAATTCTAGTAAACGATGTCGTAGTGGTCCTGCAACTACACAATCAATTTCATCACCATTTAGTCCACATATATCACCCGGTAATAAACGAACTCGACATGCTTCACAATTTGAAGAAGTTCCTTCGCCTAGTATAAAAAAAAATTCTGGTATATCTGAAGCACAAAATTC]

[+] EMBL CD200821             [GGGCCGGCCCGGTCTGGGGGGACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGAGACCTCTCAACTTGTTCCAAATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAATCAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTCTCTAGATAATCTATGCAATAATCAACCAACAACAAATTCTAGTAAACGATGTCGTAGTGGTCCTGCAACTACACAATCAATTTCATCACCATTTAGTCCACATATATCACCCGGTAATAAACGAACTCGACATGCTTCACAATTTGAAGAAGTTCCTTCGCCTAGTATAAAAAAAAATTCTGGTATATCTGAAGCACAAAATTC]




>consensus_8082#2
GGGCCGGCCCGGTCTGGGGGGACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTC
TGTAGCTGAGACCTCTCAACTTGTTCCAAATACAACTGATTTTAACACTTCTAACATAAT
TACAAACACTGAATCTGAAATCAATAATTTACAACGACAACTAAACAATCGAAAATCGGA
ATGTCGATTAATAGCTGTTTCTCTAGATAATCTATGCAATAATCAACCAACAACAAATTC
TAGTAAACGATGTCGTAGTGGTCCTGCAACTACACAATCAATTTCATCACCATTTAGTCC
ACATATATCACCCGGTAATAAACGAACTCGACATGCTTCACAATTTGAAGAAGTTCCTTC
GCCTAGTATAAAAAAAAATTCTGGTATATCTGAAGCACAAAATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8082#1      ------------------------------------------------------------
consensus_8082#2      ------------------------------------------------------------
consensus_8082#0      ATTTCACCAAGAGCATCATGTTGTATGGCATCTTCCAGTCAAACGCACAATTTTCAGTAT 60
                                                                                  

consensus_8082#1      ------------------------------------------------------------
consensus_8082#2      ------------------------------------------------------------
consensus_8082#0      GGTTCACCTGTTTTGACAGAAGTAGCTTATAGCCCAATATCCATGTCCCAACAGAAAATT 120
                                                                                  

consensus_8082#1      ------------------------------------------------------CGAACT 6
consensus_8082#2      ------------------------------------------------------------
consensus_8082#0      AATTCCGAACTACAAGTCAATAATCGTTCATTATTTTCTTCCAGTAATAGTGGTTCATTG 180
                                                                                  

consensus_8082#1      AATAAACTCTCAGTTCGTGGTTGTGAAGATCGAATTTCAACGTACGACAAATTCACCG-A 65
consensus_8082#2      ------------------------------------------------------------
consensus_8082#0      ATTACGACAACGACTACTGTTGGTGCTGGTACTGTTACATCGT-CGGTGAATTTGTCGTA 239
                                                                                  

consensus_8082#1      CGATGTAACAGTACCAGCACCAACAGTAATCGTTGTCGTAATCAATGAACCACTATTACT 125
consensus_8082#2      ------------------------------------------------------------
consensus_8082#0      CGTTGAAATTCGATCTTCACAACCACGAACTGAGAGTTTATTAGTTCGTTTACTTCACCC 299
                                                                                  

consensus_8082#1      GGAAGAAAATAATGAACGATTATTGACTTGTAGTTCGGAATTAATTT--TCTGTTGGG-- 181
consensus_8082#2      -------------------------------------GGGCCGGCCCGGTCTGGGGGG-- 21
consensus_8082#0      AGCAAAAAATCACT-----CTGTTGGAC-ATCATACAGATATGAATACTTCTGATGGGGG 353
                                                           *           ****  ***  

consensus_8082#1      ACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGTGACCTCTCAACT 241
consensus_8082#2      ACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGAGACCTCTCAACT 81
consensus_8082#0      ACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGTGACCTCTCAACT 413
                      *********************************************** ************

consensus_8082#1      TGTTCCAGATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAAT 301
consensus_8082#2      TGTTCCAAATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAAT 141
consensus_8082#0      TGTTCCAGATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAAT 473
                      ******* ****************************************************

consensus_8082#1      CAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTC 361
consensus_8082#2      CAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTC 201
consensus_8082#0      CAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTC 533
                      ************************************************************

consensus_8082#1      TCTAGATAATCTATGCAATAATCAACCAACAACAAATTCTAGTAAACGATGTCGTAGTGG 421
consensus_8082#2      TCTAGATAATCTATGCAATAATCAACCAACAACAAATTCTAGTAAACGATGTCGTAGTGG 261
consensus_8082#0      TCTAGATAATCTATGCAATAATCAACCAACAACANATTCTAGTAAACGATGTCGTAGTGG 593
                      ********************************** *************************

consensus_8082#1      TCCTGCAACTACACAATCAATTTCATCACCATTTAGTCCACATATATCACCCGGTAATAA 481
consensus_8082#2      TCCTGCAACTACACAATCAATTTCATCACCATTTAGTCCACATATATCACCCGGTAATAA 321
consensus_8082#0      TCCTGCAACTACACAATCAATTTCATCACCATTTAGT----------------------- 630
                      *************************************                       

consensus_8082#1      ACGAACTCGACATGCTTCACAATTTGAAGAAGTTCCTTCGCCTAGTATAAGAAAAAATTC 541
consensus_8082#2      ACGAACTCGACATGCTTCACAATTTGAAGAAGTTCCTTCGCCTAGTATAAAAAAAAATTC 381
consensus_8082#0      ------------------------------------------------------------
                                                                                  

consensus_8082#1      TGGTATATCTGAAGCACAAAATC- 564
consensus_8082#2      TGGTATATCTGAAGCACAAAATTC 405
consensus_8082#0      ------------------------