cluster # 8089

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Schistosoma mansoni
cluster # 8089 cluster # 8089 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8089#0 length = 324 sequences # 1

consensus_8089#1 length = 323 sequences # 1
consensus_8089#2 length = 307 sequences # 4

consensusID : consensus_8089#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence

                              [TCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAACTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAGTTATTCAACCAAACGTTTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCACAAACAAACAGTGACCTGGTAAAACGGCTAGAGTTAGTCGTTATCCGTAGTCTTGATCAGCTTGAATCCACAAAACGTGAATCGGTGTGTTGCAAGAAGGCTAGCACTAATG]

[+] EMBL CD159297             [TCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAACTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAGTTATTCAACCAAACGTTTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCACAAACAAACAGTGACCTGGTAAAACGGCTAGAGTTAGTCGTTATCCGTAGTCTTGATCAGCTTGAATCCACAAAACGTGAATCGGTGTGTTGCAAGAAGGCTAGCACTAATG]




>consensus_8089#0
TCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACT
TTAATGAAGACTGCAGTTACAACAATAACTTACTTGAAAAGTTACTATGTTTTCTTTTCA
TGAATAATGCTCAAAACTTATCGGTCAAGGAGTTATTCAACCAAACGTTTGCCGTTGACT
CAAATCAAAGTATGGGTGAATTATATGTCTCACAAACAAACAGTGACCTGGTAAAACGGC
TAGAGTTAGTCGTTATCCGTAGTCTTGATCAGCTTGAATCCACAAAACGTGAATCGGTGT
GTTGCAAGAAGGCTAGCACTAATG

consensusID : consensus_8089#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [GGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGTTCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCAAGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAATTATTCAACCAATTATATTTGATCAGACGTCTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCACAAA]

[+] EMBL CD186864             [GGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGTTCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCAAGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAATTATTCAACCAATTATATTTGATCAGACGTCTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCACAAA]




>consensus_8089#1
GGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGTT
CTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTT
TAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCAA
GCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCA
AGGAATTATTCAACCAATTATATTTGATCAGACGTCTGCCGTTGACTCAAATCAAAGTAT
GGGTGAATTATATGTCTCACAAA

consensusID : consensus_8089#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 307
fasta sequence

                              [CGGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGTTCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCAAGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAATTATTCAACCAAACGTTTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCAC]

[+] EMBL CD121221             [CGGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGTTCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCAAGCTTACTTGAAAAGTTACTACGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAATTATTCAACCAAACGTTTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCAC]
[+] EMBL CD121182             [CGGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGTTCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCAAGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAATTATTCAACCAAACGTTTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCAC]
[+] EMBL CD121235             [CGGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGTTCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCAAGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAATTATTCAACCAAACGTTTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCAC]
[+] EMBL CD121179             [CGGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGTTCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACTTTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCAAGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTCAAGGAATTATTCAACCAAACGTTTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATATGTCTCAC]




>consensus_8089#2
CGGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGT
TCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACT
TTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCA
AGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTC
AAGGAATTATTCAACCAAACGTTTGCCGTTGACTCAAATCAAAGTATGGGTGAATTATAT
GTCTCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8089#1      -GGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGT 59
consensus_8089#2      CGGCGGGTGACTTTAAGGAAGCCTGGCTTTTAACCGTTCCTGCACGTCCAGCATTTATGT 60
consensus_8089#0      ------------------------------------------------------------
                                                                                  

consensus_8089#1      TCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACT 119
consensus_8089#2      TCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACT 120
consensus_8089#0      TCTCACTCTGTTTTTAGCACAATGGAAGATAGTATGAGTTATTCGCTCATGCAATCAACT 60
                      ************************************************************

consensus_8089#1      TTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCA 179
consensus_8089#2      TTAATGAAGACTGCAGTTACAACAATAAGTAATCATTTGTCGAATCTAAAATCTAATTCA 180
consensus_8089#0      TTAATGAAGACTGCAGTTACAACAATAA-------------------------------- 88
                      ****************************                                

consensus_8089#1      AGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTC 239
consensus_8089#2      AGCTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTC 240
consensus_8089#0      --CTTACTTGAAAAGTTACTATGTTTTCTTTTCATGAATAATGCTCAAAACTTATCGGTC 146
                        **********************************************************

consensus_8089#1      AAGGAATTATTCAACCAATTATATTTGATCAGACGTCTGCCGTTGACTCAAATCAAAGTA 299
consensus_8089#2      AAGGAATTATTCAACCAA--------------ACGTTTGCCGTTGACTCAAATCAAAGTA 286
consensus_8089#0      AAGGAGTTATTCAACCAA--------------ACGTTTGCCGTTGACTCAAATCAAAGTA 192
                      ***** ************              **** ***********************

consensus_8089#1      TGGGTGAATTATATGTCTCACAAA------------------------------------ 323
consensus_8089#2      TGGGTGAATTATATGTCTCAC--------------------------------------- 307
consensus_8089#0      TGGGTGAATTATATGTCTCACAAACAAACAGTGACCTGGTAAAACGGCTAGAGTTAGTCG 252
                      *********************                                       

consensus_8089#1      ------------------------------------------------------------
consensus_8089#2      ------------------------------------------------------------
consensus_8089#0      TTATCCGTAGTCTTGATCAGCTTGAATCCACAAAACGTGAATCGGTGTGTTGCAAGAAGG 312
                                                                                  

consensus_8089#1      ------------
consensus_8089#2      ------------
consensus_8089#0      CTAGCACTAATG 324