cluster # 8091

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Schistosoma mansoni
cluster # 8091 cluster # 8091 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8091#0 length = 1067 sequences # 5

consensus_8091#1 length = 340 sequences # 1

consensusID : consensus_8091#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1067
fasta sequence

                              [CTACGGGGCCANAATTCGGCACGAGGTGTTTCAGGACAAGATATATTAGACCAGTTAGTAGAAGGCAACTCAAATTTCGAACAAAAAACACTATTCTCTCAACAAAAGTACCTCAAGAGAAAGAAAGATCGGCACTTGGGTTTATTCTCAGTTGAGAAGCCTAAAGTACGCATATGTTTTGAAATATACAATAATATTCGCCCAGAAAAGTGTCTTGGACTGCGTTTTGACACAGTATGTCGTATCCTGTCTTATGCTAATATTCATGCAGGATCAACTGTTCTTCTTTGTGAAACTTGTTCTGGACTCATCACAGCTGCTGTACTCGAGCGTATTGGCATAGATCAACCAAAAGGATCTGTGATTCAATTTTACCATGGTTCATCGTTTCCGAAATCAGAAATTAGT-CCTGTTTATGGAAATTCGTACAGTGAAAAAGTTCATCCTGTTCGTTTATTAGATGTATTACCGATC--TTGTTATACAAAGCTACTTTAGATACCGATCACAATTTTGTGGAAAATCATGTGGATAACAGCGATTCCCAAATTTCGTCTAAAATTCGTAAAATCGATGAGGATATTTCTTCTGAAGAGATAGCTCAGATTGAAAACCAAAACGCACCAAGTCAATCCAAAATCAGTGAATATTACATTTCTTCATTCAATCAAATTTTTGGAAATAGTCGTCCTACACCTGATTCACTTGTCATCGTTACTCGATTTCATCCGGTCGATTTAACTTTAACCTTACTTCAG-TTCTGCCTATTGGACGACCATTTGTAGTTTATACACAATATATACAACCCCTTGTTGATCTGTACAATATTTTAAAACGACGCGGTGGAATAACGCATCTTCGTTTAACCGATAGCTGGTTTCGTCATATTCAAGTATTACCAGAGAGAACGCATCCTGAAATTAATATGTCATGTTCAAACGGTTACCTTTTAACTGGTTATACAATTGAACCTGTATTAAGTACAAAAGAATTTTTGGAGTCCGGACTTTTATCATCTATTGGTTGACTTAATGTTTGAAATGCTTTTTTAATTCCTCAAAATGCATGG]

[+] EMBL CD079664             [CTACGGGGCCANAATTCGGCACGAGGTGTTTCAGGACAAGATATATTAGACCAGTTAGTAGAAGGCAACTCAAATTTCGAACAAAAAACACTATTCTCTCAACAAAAGTACCTCAAGAGAAAGAAAGATCGGCACTTGGGTTTATTCTCAGTTGAGAAGCCTAAAGTACGCATATGTTTTGAAATATACAATAATATTCGCCCAGAAAAGTGTCTTGGACTGCGTTTTGACACAGTATGTCGTATCCTGTCTTATGCTAATATTCATGCAGGATCAACTGTTCTTCTTTGTGAAACTTGTTCTGGACTCATCACAGCTGCTGTACTCGAGCGTATTGGCATAGATCAACCAAAAGGATCTGTGATTCAATTTTACCATGGTTCATCGTTTCCGAAATCAGAAATTAGT CCTGTTTATGGAAATTCGTACAGTGAAAAAGTTCATCCTGTTCGTTTATTAGATGTATTACCGATC  TTGTTATACAAAGCTACTTTAGATACCGATCACAATTTTGTGGAAAATCATGTGGATAACAGCGATTCCCAAATTTCGTCTAAAATTCGTAAAATCGATGAGGATATTTCTTCTGAAGAGATAGCTCAGATTGAAAACCAAAACGCACCAAGTCAATCCAAAATCAGTGAATATTACATTTCTTCATTCAATCAAATTTTTGGAAATAGTCGTCCTACACCTGATTCACTTGTCATCGTTACTCGATTTCATCCGGTCGATTT ACTNTAACCTTACTTCAG TTCTGCC                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD079410             [                          TGTTTCAGGACAAGATATATTAGACCAGTTAGTAGAAGGCAACTCAAATTTCGAACAAAAAACACTATTCTCTCAACAAAAGTACCTCAAGAGAAAGAAAGATCGGCACTTGGGTTTATTCTCAGTTGAGAAGCCTAAAGTACGCATATGTTTTGAAATATACAATAATATTCGCCCAGAAAAGTGTCTTGGACTGCGTTTTGACACAGTATGTCGTATCCTGTCTTATGCTAATATTCATGCAGGATCAACTGTTCTTCTTTGTGAAACTTGTTCTGGACTCATCACAGCTGCTGTACTCGAGCGTATTGGCATAGATCAACCAAAAGGATCTGTGATTCAATTTTACCATGGTTCATCGTTTCCGAAATCAGAAATTAGT CCTGTTTATGGAAATTCGTACAGTGAAAAAGTTCATCCTGTTCGTTTATTAGATGTATTACCGATC  TTGTTATACAAAGCTACTTTAGATACCGATCACAATTTTGTGGAAAATCATGTGGATAACAGCGATTCCCAAATTTCGTCTAAAATTCGTAAAATCGATGAGGATATTTCTTCTGAAGAGATAGCTCAGATTGAAAACCAAAACGCACCAAGTCAATCCAAAATCAGTGAATATTACATTTCTTCATTCAATCAAATTTTTGGAAATAGTCGTCCTACACCTGATTCACTTGTCATCGNTACTCGATTTCATCCGGTCGATTTAACTTT ACCTTACT                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD073924             [                                                                                                                                                                                                                                                                                                                                                                 AGGATCTGTGATTCAATTTTACCATGGTTCATCGTTTCCGAAATCAGAAATTAGT CCTGTTTATGGAAATTCGTACAGTGAAAAAGTTCATCCTGTTCGTTTATTAGATGTATTACCGATC  TTGTTATACAAAGCTACTTTAGATACCGATCACAATTTTGTGGAAAATCATGTGGATAACAGCGATTCCCAAATTTCGTCTAAAATTCGTAAAATCGATGAGGATATTTCTTCTGAAGAGATAGCTCAGATTGAAAACCAAAACGCACCAAGTCAATCCAAAATCAGTGAATATTACATTTCTTCATTCAATCAAATTTTTGGAAATAGTCGTCCTACACCTGATTCACTTGTCATCGTTACTCGATTTCATCCGGTCGATTTAACTTTAACCTTACTTCAGTTTCTGCCTATTGGACGACCATTTGTAGTTTATACACAATATATACAACCCCTTGTTGATCTGTACAATATTTTAAAACGACGCGGTGGAATAACGCATCTTCGTTTAACCGATAGCTGGTTTCGTCATATTCAAGTATTACCAGAGAGAACGCATCCTGAAATTAATATGTCATGTTCAAACGGTTACCTTTTAACTGGTTATACAATTGAACCTGTATTAAGTACAAAAGAATTTTTGGAGTCCGGACTTTTATCATCTATTGGTTGACTTAATGTTTGAAATGCTTTTTTAATTCCTCAAAATGCATGG]
[-] EMBL CD073684             [                                                                                                                                                                                                                                                                                                                                                                                              CATCGTTTCCGAAATCAGAAATTAGT CCTGTTTATGGAAATTCGTACAGTGAAAAAGTTCATCCTGTTCGTTTATTAGATGTATTACCGATC  TTGTTATACAAAGCTACTTTAGATACCGATCACAATTTTGTGGAAAATCATGTGGATAACAGCGATTCCCAAATTTCGTCTAAAATTCGTAAAATCGATGAGGATATTTCTTCTGAAGAGATAGCTCAGATTGAAAACCAAAACGCACCAAGTCAATCCAAAATCAGTGAATATTACATTTCTTCATTCAATCAAATTTTTGGAAATAGTCGTCCTACACCTGATTCACTTGTCATCGTTACTCGATTTCATCCGGTCGATTTAACTTTAACCTTACTTCAGTTTCTGCCTATTGGACGACCATTTGTAGTTTATACACAATATATACAACCCCTTGTTGATCTGTACAATATTTTAAAACGACGCGGTGGAATAACGCATCTTCGTTTAACCGATAGCTGGTTTCGTCATATTCAAGTATTACCAGAGAGAACGCATCCTGAAATTAATATGTCATGTTCAAACGGTTACCTTTTAACTGGTTATACAATTGAACCTGTATTAAGTACAAAAGAATTTTTGGAGTCCGGACTTTTATCATCTATTGGTTGACTTAATGTTTGAAATGCTTTTTTAATTCCTCAAAATGCATGG]
[-] EMBL CD181253             [                                                                                                                                                                                                                                                                                                                                                                                                                 naaTAGTCCCTGTTTATGGAAATTCGTACAGTGAAAAAGTTCATCCTGTTCGTTATTTAGATGTA TA CGATCNNNTGTTATACAAAGCTACTTTAGATACCGATCACAATTTTGTGGAAAATCATGTGGATAACAGCGATTCCCAAATTTCGTCTAAAATTCGTAAAATCGATGAGGATATTTCTTCTGAAGAGATAGCCCAGATTGAAAACCAAAACGCACCAAGTCAATCCAAAATCAGTGAATATTACATTTCTTCATTCAATCAAATTTTTGGAAATAGTCGTCCTACACCTGATTCACTTGTCATCGTTACTCGATTTCATCCGGTCGATTTAACTTT                                                                                                                                                                                                                                                                                                                                     ]




>consensus_8091#0
CTACGGGGCCANAATTCGGCACGAGGTGTTTCAGGACAAGATATATTAGACCAGTTAGTA
GAAGGCAACTCAAATTTCGAACAAAAAACACTATTCTCTCAACAAAAGTACCTCAAGAGA
AAGAAAGATCGGCACTTGGGTTTATTCTCAGTTGAGAAGCCTAAAGTACGCATATGTTTT
GAAATATACAATAATATTCGCCCAGAAAAGTGTCTTGGACTGCGTTTTGACACAGTATGT
CGTATCCTGTCTTATGCTAATATTCATGCAGGATCAACTGTTCTTCTTTGTGAAACTTGT
TCTGGACTCATCACAGCTGCTGTACTCGAGCGTATTGGCATAGATCAACCAAAAGGATCT
GTGATTCAATTTTACCATGGTTCATCGTTTCCGAAATCAGAAATTAGTCCTGTTTATGGA
AATTCGTACAGTGAAAAAGTTCATCCTGTTCGTTTATTAGATGTATTACCGATCTTGTTA
TACAAAGCTACTTTAGATACCGATCACAATTTTGTGGAAAATCATGTGGATAACAGCGAT
TCCCAAATTTCGTCTAAAATTCGTAAAATCGATGAGGATATTTCTTCTGAAGAGATAGCT
CAGATTGAAAACCAAAACGCACCAAGTCAATCCAAAATCAGTGAATATTACATTTCTTCA
TTCAATCAAATTTTTGGAAATAGTCGTCCTACACCTGATTCACTTGTCATCGTTACTCGA
TTTCATCCGGTCGATTTAACTTTAACCTTACTTCAGTTCTGCCTATTGGACGACCATTTG
TAGTTTATACACAATATATACAACCCCTTGTTGATCTGTACAATATTTTAAAACGACGCG
GTGGAATAACGCATCTTCGTTTAACCGATAGCTGGTTTCGTCATATTCAAGTATTACCAG
AGAGAACGCATCCTGAAATTAATATGTCATGTTCAAACGGTTACCTTTTAACTGGTTATA
CAATTGAACCTGTATTAAGTACAAAAGAATTTTTGGAGTCCGGACTTTTATCATCTATTG
GTTGACTTAATGTTTGAAATGCTTTTTTAATTCCTCAAAATGCATGG

consensusID : consensus_8091#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence

                              [GGTCGATTTAACTDTAACCTTACTTCAGTTTCTGCCTATTGGACGACCATTTGTAGTTTATACACAATATATACAACCCCTTGTTGATCATGTACAATATTTTAAAACGACGCGGTGGAATACGCATCATCGTTTAACGATAGCTCGTTTCGTCATATTCCAGTATTAACAGAGAGGACGCATCCTGAAATTAATATGTGCATGTTCAAACGGGTAGCATTTAACTGGGTATACAATTGGACCTGTGATTAGTGCACAAGAATTTTTGGAGTCCGGACATTTATCATCCTATAGGGTGACATTAAGTGTGAAAGCGCTTTTAATCTCAAAATGCGTGGGT]

[+] EMBL AI395873             [GGTCGATTTAACTDTAACCTTACTTCAGTTTCTGCCTATTGGACGACCATTTGTAGTTTATACACAATATATACAACCCCTTGTTGATCATGTACAATATTTTAAAACGACGCGGTGGAATACGCATCATCGTTTAACGATAGCTCGTTTCGTCATATTCCAGTATTAACAGAGAGGACGCATCCTGAAATTAATATGTGCATGTTCAAACGGGTAGCATTTAACTGGGTATACAATTGGACCTGTGATTAGTGCACAAGAATTTTTGGAGTCCGGACATTTATCATCCTATAGGGTGACATTAAGTGTGAAAGCGCTTTTAATCTCAAAATGCGTGGGT]




>consensus_8091#1
GGTCGATTTAACTDTAACCTTACTTCAGTTTCTGCCTATTGGACGACCATTTGTAGTTTA
TACACAATATATACAACCCCTTGTTGATCATGTACAATATTTTAAAACGACGCGGTGGAA
TACGCATCATCGTTTAACGATAGCTCGTTTCGTCATATTCCAGTATTAACAGAGAGGACG
CATCCTGAAATTAATATGTGCATGTTCAAACGGGTAGCATTTAACTGGGTATACAATTGG
ACCTGTGATTAGTGCACAAGAATTTTTGGAGTCCGGACATTTATCATCCTATAGGGTGAC
ATTAAGTGTGAAAGCGCTTTTAATCTCAAAATGCGTGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8091#0      CTACGGGGCCANAATTCGGCACGAGGTGTTTCAGGACAAGATATATTAGACCAGTTAGTA 60
consensus_8091#1      ------------------------------------------------------------
                                                                                  

consensus_8091#0      GAAGGCAACTCAAATTTCGAACAAAAAACACTATTCTCTCAACAAAAGTACCTCAAGAGA 120
consensus_8091#1      ------------------------------------------------------------
                                                                                  

consensus_8091#0      AAGAAAGATCGGCACTTGGGTTTATTCTCAGTTGAGAAGCCTAAAGTACGCATATGTTTT 180
consensus_8091#1      ------------------------------------------------------------
                                                                                  

consensus_8091#0      GAAATATACAATAATATTCGCCCAGAAAAGTGTCTTGGACTGCGTTTTGACACAGTATGT 240
consensus_8091#1      ------------------------------------------------------------
                                                                                  

consensus_8091#0      CGTATCCTGTCTTATGCTAATATTCATGCAGGATCAACTGTTCTTCTTTGTGAAACTTGT 300
consensus_8091#1      ------------------------------------------------------------
                                                                                  

consensus_8091#0      TCTGGACTCATCACAGCTGCTGTACTCGAGCGTATTGGCATAGATCAACCAAAAGGATCT 360
consensus_8091#1      ------------------------------------------------------------
                                                                                  

consensus_8091#0      GTGATTCAATTTTACCATGGTTCATCGTTTCCGAAATCAGAAATTAGTCCTGTTTATGGA 420
consensus_8091#1      ------------------------------------------------------------
                                                                                  

consensus_8091#0      AATTCGTACAGTGAAAAAGTTCATCCTGTTCGTTTATTAGATGTATTACCGATCTTGTTA 480
consensus_8091#1      ------------------------------------------------------------
                                                                                  

consensus_8091#0      TACAAAGCTACTTTAGATACCGATCACAATTTTGTGGAAAATCATGTGGATAACAGCGAT 540
consensus_8091#1      ------------------------------------------------------------
                                                                                  

consensus_8091#0      TCCCAAATTTCGTCTAAAATTCGTAAAATCGATGAGGATATTTCTTCTGAAGAGATAGCT 600
consensus_8091#1      ------------------------------------------------------------
                                                                                  

consensus_8091#0      CAGATTGAAAACCAAAACGCACCAAGTCAATCCAAAATCAGTGAATATTACATTTCTTCA 660
consensus_8091#1      ------------------------------------------------------------
                                                                                  

consensus_8091#0      TTCAATCAAATTTTTGGAAATAGTCGTCCTACACCTGATTCACTTGTCATCGTTACTCGA 720
consensus_8091#1      ------------------------------------------------------------
                                                                                  

consensus_8091#0      TTTCATCCGGTCGATTTAACTTTAACCTTACTTCAGTT-CTGCCTATTGGACGACCATTT 779
consensus_8091#1      --------GGTCGATTTAACTDTAACCTTACTTCAGTTTCTGCCTATTGGACGACCATTT 52
                              ************* **************** *********************

consensus_8091#0      GTAGTTTATACACAATATATACAACCCCTTGTTGATC-TGTACAATATTTTAAAACGACG 838
consensus_8091#1      GTAGTTTATACACAATATATACAACCCCTTGTTGATCATGTACAATATTTTAAAACGACG 112
                      ************************************* **********************

consensus_8091#0      CGGTGGAATAACGCATCTTCGTTTAACCGATAGCTGGTTTCGTCATATTCAAGTATTACC 898
consensus_8091#1      CGGTGGAATA-CGCATCATCGTTTAAC-GATAGCTCGTTTCGTCATATTCCAGTATTAAC 170
                      ********** ****** ********* ******* ************** ******* *

consensus_8091#0      AGAGAGAACGCATCCTGAAATTAATATGT-CATGTTCAAACGGTTACCTTTTAACTGGTT 957
consensus_8091#1      AGAGAGGACGCATCCTGAAATTAATATGTGCATGTTCAAACGGGTAGCATTTAACTGGGT 230
                      ****** ********************** ************* ** * ********* *

consensus_8091#0      ATACAATTGAACCTGTATTAAGTACAAAAGAATTTTTGGAGTCCGGACTTTTATCATC-T 1016
consensus_8091#1      ATACAATTGGACCTGTGATTAGTGCACAAGAATTTTTGGAGTCCGGACATTTATCATCCT 290
                      ********* ******  * *** ** ********************* ********* *

consensus_8091#0      ATTGGTTGACTTAATGTTTGAAATGCTTTTTTAATTCCTCAAAATGCATGG-- 1067
consensus_8091#1      ATAGGGTGACATTAAGTGTGAAA-GCGCTTTTAAT--CTCAAAATGCGTGGGT 340
                      ** ** **** * * ** ***** **  *******  ********** ***