cluster # 8096

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Schistosoma mansoni
cluster # 8096 cluster # 8096 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8096#0 length = 719 sequences # 3

consensus_8096#1 length = 527 sequences # 3

consensusID : consensus_8096#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 719
fasta sequence

                              [TGTTCACATTGAAACACTCTAATTAATTGTCGCACCAAATAACCATTCCATACATGTGATTGGTCAATGATTCTTCCGAGCTGTCACCAAAACTGTTAGAAAAACAAATTTTCAAATGCTTGGTGTAAACAATGTTATAATTACAAGAAAAACAGATAGACAACTTACTTGAAAAAGTGATTAGATGATCAATTAATGTCTGGTTGTAAAT-AATCGGCTCACGAGTATGCATGCTAATGAACACCGACTTAATGACAACAGATTTCTGTTTTGCGTTAAACTCCTTATTACTGGCGAATATATAAGCATCGTTTTGACTTTTGGTTCGAAATAGAGTAGTAATCTACGTTCACCTAGTCATTCGATACTATGGAAATGCATTCCCCAACGTCGTTTAATTGCTTTATGGACTGAGCTTTTAGACAACAAGCCTTG-AGATAGTCAGCTCCTTCGGAAAAACAACTGCTTGGATCCAGGAACCTGAACAGTGACATAGTTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTGGCCATTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTACACTTTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCTTCTATAGTTTCTTTAGTATATTTCTCACGAAGTTCTTTCATTTCTTTACTAGCCATCTCTTCT]

[+] EMBL CD184379             [TGTTCACATTGAAACACTCTAATTAATTGTCGCACCAAATAACCATTCCATACATGTGATTGGTCAATGATTCTTCCGAGCTGTCACCAAAACTGTTAGAAAAACAAATTTTCAAATGCTTGGTGTAAACAATGTTATAATTACAAGAAAAACAGATAGACAACTTACTTGAAAAAGTGATTAGATGATCAATTAATGTCTGGTTGTAAATAAATCGGCTCACGAGTATGCATGCTAATGAACACCGACTTAATGACAACAGATTTCTGTTTTGCGTTAAACTCCTTATTACTGGCGAATATATAAGCATCGTTTTGACTTTTGGTTCGAAATAGAGTAGTAATCTACGTTCACCTAGTCATTCGATACTATGGAAATGCATTCCCCAACGTCGTTTAATTGCTTTATGGACTGAGCTTTTAGACAACAAGCCTTG AGATAGTCA                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD184382             [TGTTCACATTGAAACAATCTAATTAAATCTCGCAGCAGAAAACTAGTACATAAGTGTGATTGGACAATGATTTTTCCGAGCTGTCAGCAAAACTGTTAGAAAAACAAATTTTCAAATGCTTGGTGTAAACAATGTTATAATTACAAGAAAAACAGATAGACAACTTACTTGAAAAAGTGATTAGATGATCAATTAATGTCTGGTTGTAAAT AAatc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD125917             [                                                                                                                                                                                                            TGTAAAT AATCGGCTCACGAGTATGCATGCTAATGAACACCGACTTAATGACAACAGATTTCTGTTTTGCGTTAAACTCCTTATTACTGGCGAATATATAAGCATCGTTTTGACTTTTGGTTGGAAATAGAGTAATGATCTACGTTCACCTAGTCATCGGATACTATGGAAATGCATTCCCCAACGTCGCTTAATTGCTTTATGGACTGAGCTTTTAGACAACAAG CTTGAAGATAGTCAGCTCCTTCGGAAAAACAACTGCTTGGATCCAGGAACCTGAACAGTGACATAGTTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTGGCCATTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTACACTTTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCTTCTATAGTTTCTTTAGTATATTTCTCACGAAGTTCTTTCATTTCTTTACTAGCCATCTCTTCT]




>consensus_8096#0
TGTTCACATTGAAACACTCTAATTAATTGTCGCACCAAATAACCATTCCATACATGTGAT
TGGTCAATGATTCTTCCGAGCTGTCACCAAAACTGTTAGAAAAACAAATTTTCAAATGCT
TGGTGTAAACAATGTTATAATTACAAGAAAAACAGATAGACAACTTACTTGAAAAAGTGA
TTAGATGATCAATTAATGTCTGGTTGTAAATAATCGGCTCACGAGTATGCATGCTAATGA
ACACCGACTTAATGACAACAGATTTCTGTTTTGCGTTAAACTCCTTATTACTGGCGAATA
TATAAGCATCGTTTTGACTTTTGGTTCGAAATAGAGTAGTAATCTACGTTCACCTAGTCA
TTCGATACTATGGAAATGCATTCCCCAACGTCGTTTAATTGCTTTATGGACTGAGCTTTT
AGACAACAAGCCTTGAGATAGTCAGCTCCTTCGGAAAAACAACTGCTTGGATCCAGGAAC
CTGAACAGTGACATAGTTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTGGCCA
TTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTACACT
TTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCTTCTA
TAGTTTCTTTAGTATATTTCTCACGAAGTTCTTTCATTTCTTTACTAGCCATCTCTTCT

consensusID : consensus_8096#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 527
fasta sequence

                              [AGGGACATCATTGATCTTTTTGTCCAACTCTGACAGTCTATTTCTTCCTAAAAAAAAACCGGTTTTTGAGGATGAATAAGGTCGAAAACGAAGATGCATATTTCTTCTCTACTTTCTTCTTTAGTAATAGTGTTCACATTGAAACAATCTAATTAAATCTCGCAGCAGAAAACTAGTACATAAGTGTGATTGGACAATGATTTTTCCGAGCTGTCAGCAAAATTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTGGTCATTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTACACTTTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCTTCTATAGTTTCTTTAGTATATTTCTCACGAAGTTCTTTCATTTCTTTACTAGCCATCTCTTCTGATGTCATAGATGCTAGTTTATCCGGACTCACGTGTCCCATTAGGACATTAAGTCGCAAATTGGGATTATTAGAATCGCGTA]

[+] EMBL CD140399             [AGGGACATCATTGATCTTTTTGTCCAACTCTGACAGTCTATTTCTTCCTAAAAAAAAACCGGTTTTTGAGGATGAATAAGGTCGAAAACGAAGATGCATATTTCTTCTCTACTTTCTTCTTTAGTAATAGTGTTCACATTGAAACAATCTAATTAAATCTCGCAGCAGAAAACTAGTACATAAGTGTGATTGGACAATGATTTTTCCGAGCTGTCAGCAAAATTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTGGTCATTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTACACTTTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCTTCTATAGTTTCTTTAGTATATTTCTCACGAAGTTCTTTCATTTCTTTACTAGCCATCTC                                                                                      ]
[+] EMBL CD140352             [AGGGACATCATTGATCTTTTTGTCCAACTCTGACAGTCTATTTCTTCCT  AAAAAAACCGGTTTTTGAGAATGAATAAGGTCGAAAACGAAGATGCATATTTCTTCTCTACTTTCTTCTTTAGTAATAGTGTTCACATTGAAACAATCTAATTAAATCTCGCAGCAGAAAACTAGTACATAAGTGTGATTGGACAATGATTTTTCCGAGCTGTCAGCAAAATTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTGGTCATTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTACACTTTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCTTCTAT                                                                                                                                            ]
[-] EMBL CD197179             [                                                                                         GAAGATGCATATTTCTTCTCTACTTTCTTCTTTAGTAATAGTGTTCACATTGAAACAATCTAATTAAATCTCGCAGCAGAAAACTAGTACATAAGTGTGATTGGACAATGATTTTTCCGAGCTGTCAGCAAAATTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTGGTCATTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTACACTTTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCTTCTATAGTTTCTTTAGTATATTTCTCACGAAGTTCTTTCATTTCTGTACTAGCCATCTCTTCTGATGTCATAGATGCTAGTTTATCCGGACTCACGTGTCCCATTAGGACATTAAGTCGCAAATTGGGATTATTAGAATCGCGTA]




>consensus_8096#1
AGGGACATCATTGATCTTTTTGTCCAACTCTGACAGTCTATTTCTTCCTAAAAAAAAACC
GGTTTTTGAGGATGAATAAGGTCGAAAACGAAGATGCATATTTCTTCTCTACTTTCTTCT
TTAGTAATAGTGTTCACATTGAAACAATCTAATTAAATCTCGCAGCAGAAAACTAGTACA
TAAGTGTGATTGGACAATGATTTTTCCGAGCTGTCAGCAAAATTTCCAACGGTGGCCGCA
ATTGTTACAATAGACAAAAGTGGTCATTGGTTCATCTGCACTACGAGTTTGGACCTGATT
ATATGTACACTTGGTTTGCTTACACTTTCCACATCGTAATAAATCAGTTTCTGTACCACC
AGTTACAGCCATTTGATGGTCTTCTATAGTTTCTTTAGTATATTTCTCACGAAGTTCTTT
CATTTCTTTACTAGCCATCTCTTCTGATGTCATAGATGCTAGTTTATCCGGACTCACGTG
TCCCATTAGGACATTAAGTCGCAAATTGGGATTATTAGAATCGCGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8096#0      TGTTCACATTGAAACACTCTAATTAATTGTCGCACCAAATAACCATTCCATACATGTGAT 60
consensus_8096#1      ------------------------------------------------------------
                                                                                  

consensus_8096#0      TGGTCAATGATTCTTCCGAGCTGTCACCAAAACTGTTAGAAAAACAAATTTTCAAATGCT 120
consensus_8096#1      ------------------------------------------------------------
                                                                                  

consensus_8096#0      TGGTGTAAACAATGTTATAATTACAAGAAAAACAGATAGACAACTTACTTGAAAAAGTGA 180
consensus_8096#1      ------------------------------------------------------------
                                                                                  

consensus_8096#0      TTAGATGATCAATTAATGTCTGGTTGTAAATAATCGGCTCACGAGTATGCATGCTAATGA 240
consensus_8096#1      ------------------------------------------------------------
                                                                                  

consensus_8096#0      ACACCGACTTAATGACAACA--GATTTCTGT-TTTGCGTTAAACTCCTTATTACTGGCGA 297
consensus_8096#1      ----------AGGGACATCATTGATCTTTTTGTCCAACTCTGACAGTCTATTTCTTCCTA 50
                                *  **** **  *** * * * *     *   **    **** **  * *

consensus_8096#0      ATATATAAGCATCGTTTTGACTTTTGGTTCGAAATAGAGTAGTAATCTACGTTCACCTAG 357
consensus_8096#1      AAAAAAAA--------CCGGTTTTTGAGGATGAATAAGGTCGAAAACGAAGAT-GCATAT 101
                      * * * **          *  *****      ****  ** * ** * * * *  * ** 

consensus_8096#0      TCATTCGATACTATGGAAATGCATTCCCCAACGTCGTTTAATTGCTTTATGGACTGAGCT 417
consensus_8096#1      TTCTTCTCTACTTT-----CTTCTTTAGTAATAGTGTTCACAT------TGAAACAATCT 150
                      *  ***  **** *         **    **    *** *  *      ** *   * **

consensus_8096#0      TTTAGACAACAAGCCTTGAGATAGTCAGCTCCTTCGGAAAAACAACTGCTTGGATCCAGG 477
consensus_8096#1      AAT------TAAATCTCGCAGCAGAAAACTAGTACATAAGTGTGATTGGAC--AATGATT 202
                        *       **  ** *    **  * **  * *  **     * **     *   *  

consensus_8096#0      AACCTGAACAGTGA-CATAGTTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTG 536
consensus_8096#1      TTTCCGAGCTGTCAGCAAAATTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTG 262
                         * ** * ** * ** * ****************************************

consensus_8096#0      GCCATTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTA 596
consensus_8096#1      GTCATTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTA 322
                      * **********************************************************

consensus_8096#0      CACTTTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCT 656
consensus_8096#1      CACTTTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCT 382
                      ************************************************************

consensus_8096#0      TCTATAGTTTCTTTAGTATATTTCTCACGAAGTTCTTTCATTTCTTTACTAGCCATCTCT 716
consensus_8096#1      TCTATAGTTTCTTTAGTATATTTCTCACGAAGTTCTTTCATTTCTTTACTAGCCATCTCT 442
                      ************************************************************

consensus_8096#0      TCT--------------------------------------------------------- 719
consensus_8096#1      TCTGATGTCATAGATGCTAGTTTATCCGGACTCACGTGTCCCATTAGGACATTAAGTCGC 502
                      ***                                                         

consensus_8096#0      -------------------------
consensus_8096#1      AAATTGGGATTATTAGAATCGCGTA 527