These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 719 fasta sequence [TGTTCACATTGAAACACTCTAATTAATTGTCGCACCAAATAACCATTCCATACATGTGATTGGTCAATGATTCTTCCGAGCTGTCACCAAAACTGTTAGAAAAACAAATTTTCAAATGCTTGGTGTAAACAATGTTATAATTACAAGAAAAACAGATAGACAACTTACTTGAAAAAGTGATTAGATGATCAATTAATGTCTGGTTGTAAAT-AATCGGCTCACGAGTATGCATGCTAATGAACACCGACTTAATGACAACAGATTTCTGTTTTGCGTTAAACTCCTTATTACTGGCGAATATATAAGCATCGTTTTGACTTTTGGTTCGAAATAGAGTAGTAATCTACGTTCACCTAGTCATTCGATACTATGGAAATGCATTCCCCAACGTCGTTTAATTGCTTTATGGACTGAGCTTTTAGACAACAAGCCTTG-AGATAGTCAGCTCCTTCGGAAAAACAACTGCTTGGATCCAGGAACCTGAACAGTGACATAGTTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTGGCCATTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTACACTTTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCTTCTATAGTTTCTTTAGTATATTTCTCACGAAGTTCTTTCATTTCTTTACTAGCCATCTCTTCT] [+] EMBL CD184379 [TGTTCACATTGAAACACTCTAATTAATTGTCGCACCAAATAACCATTCCATACATGTGATTGGTCAATGATTCTTCCGAGCTGTCACCAAAACTGTTAGAAAAACAAATTTTCAAATGCTTGGTGTAAACAATGTTATAATTACAAGAAAAACAGATAGACAACTTACTTGAAAAAGTGATTAGATGATCAATTAATGTCTGGTTGTAAATAAATCGGCTCACGAGTATGCATGCTAATGAACACCGACTTAATGACAACAGATTTCTGTTTTGCGTTAAACTCCTTATTACTGGCGAATATATAAGCATCGTTTTGACTTTTGGTTCGAAATAGAGTAGTAATCTACGTTCACCTAGTCATTCGATACTATGGAAATGCATTCCCCAACGTCGTTTAATTGCTTTATGGACTGAGCTTTTAGACAACAAGCCTTG AGATAGTCA ] [+] EMBL CD184382 [TGTTCACATTGAAACAATCTAATTAAATCTCGCAGCAGAAAACTAGTACATAAGTGTGATTGGACAATGATTTTTCCGAGCTGTCAGCAAAACTGTTAGAAAAACAAATTTTCAAATGCTTGGTGTAAACAATGTTATAATTACAAGAAAAACAGATAGACAACTTACTTGAAAAAGTGATTAGATGATCAATTAATGTCTGGTTGTAAAT AAatc ] [+] EMBL CD125917 [ TGTAAAT AATCGGCTCACGAGTATGCATGCTAATGAACACCGACTTAATGACAACAGATTTCTGTTTTGCGTTAAACTCCTTATTACTGGCGAATATATAAGCATCGTTTTGACTTTTGGTTGGAAATAGAGTAATGATCTACGTTCACCTAGTCATCGGATACTATGGAAATGCATTCCCCAACGTCGCTTAATTGCTTTATGGACTGAGCTTTTAGACAACAAG CTTGAAGATAGTCAGCTCCTTCGGAAAAACAACTGCTTGGATCCAGGAACCTGAACAGTGACATAGTTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTGGCCATTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTACACTTTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCTTCTATAGTTTCTTTAGTATATTTCTCACGAAGTTCTTTCATTTCTTTACTAGCCATCTCTTCT] consensusID : consensus_8096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 527 fasta sequence [AGGGACATCATTGATCTTTTTGTCCAACTCTGACAGTCTATTTCTTCCTAAAAAAAAACCGGTTTTTGAGGATGAATAAGGTCGAAAACGAAGATGCATATTTCTTCTCTACTTTCTTCTTTAGTAATAGTGTTCACATTGAAACAATCTAATTAAATCTCGCAGCAGAAAACTAGTACATAAGTGTGATTGGACAATGATTTTTCCGAGCTGTCAGCAAAATTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTGGTCATTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTACACTTTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCTTCTATAGTTTCTTTAGTATATTTCTCACGAAGTTCTTTCATTTCTTTACTAGCCATCTCTTCTGATGTCATAGATGCTAGTTTATCCGGACTCACGTGTCCCATTAGGACATTAAGTCGCAAATTGGGATTATTAGAATCGCGTA] [+] EMBL CD140399 [AGGGACATCATTGATCTTTTTGTCCAACTCTGACAGTCTATTTCTTCCTAAAAAAAAACCGGTTTTTGAGGATGAATAAGGTCGAAAACGAAGATGCATATTTCTTCTCTACTTTCTTCTTTAGTAATAGTGTTCACATTGAAACAATCTAATTAAATCTCGCAGCAGAAAACTAGTACATAAGTGTGATTGGACAATGATTTTTCCGAGCTGTCAGCAAAATTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTGGTCATTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTACACTTTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCTTCTATAGTTTCTTTAGTATATTTCTCACGAAGTTCTTTCATTTCTTTACTAGCCATCTC ] [+] EMBL CD140352 [AGGGACATCATTGATCTTTTTGTCCAACTCTGACAGTCTATTTCTTCCT AAAAAAACCGGTTTTTGAGAATGAATAAGGTCGAAAACGAAGATGCATATTTCTTCTCTACTTTCTTCTTTAGTAATAGTGTTCACATTGAAACAATCTAATTAAATCTCGCAGCAGAAAACTAGTACATAAGTGTGATTGGACAATGATTTTTCCGAGCTGTCAGCAAAATTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTGGTCATTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTACACTTTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCTTCTAT ] [-] EMBL CD197179 [ GAAGATGCATATTTCTTCTCTACTTTCTTCTTTAGTAATAGTGTTCACATTGAAACAATCTAATTAAATCTCGCAGCAGAAAACTAGTACATAAGTGTGATTGGACAATGATTTTTCCGAGCTGTCAGCAAAATTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTGGTCATTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTACACTTTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCTTCTATAGTTTCTTTAGTATATTTCTCACGAAGTTCTTTCATTTCTGTACTAGCCATCTCTTCTGATGTCATAGATGCTAGTTTATCCGGACTCACGTGTCCCATTAGGACATTAAGTCGCAAATTGGGATTATTAGAATCGCGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8096#0 TGTTCACATTGAAACACTCTAATTAATTGTCGCACCAAATAACCATTCCATACATGTGAT 60 consensus_8096#1 ------------------------------------------------------------ consensus_8096#0 TGGTCAATGATTCTTCCGAGCTGTCACCAAAACTGTTAGAAAAACAAATTTTCAAATGCT 120 consensus_8096#1 ------------------------------------------------------------ consensus_8096#0 TGGTGTAAACAATGTTATAATTACAAGAAAAACAGATAGACAACTTACTTGAAAAAGTGA 180 consensus_8096#1 ------------------------------------------------------------ consensus_8096#0 TTAGATGATCAATTAATGTCTGGTTGTAAATAATCGGCTCACGAGTATGCATGCTAATGA 240 consensus_8096#1 ------------------------------------------------------------ consensus_8096#0 ACACCGACTTAATGACAACA--GATTTCTGT-TTTGCGTTAAACTCCTTATTACTGGCGA 297 consensus_8096#1 ----------AGGGACATCATTGATCTTTTTGTCCAACTCTGACAGTCTATTTCTTCCTA 50 * **** ** *** * * * * * ** **** ** * * consensus_8096#0 ATATATAAGCATCGTTTTGACTTTTGGTTCGAAATAGAGTAGTAATCTACGTTCACCTAG 357 consensus_8096#1 AAAAAAAA--------CCGGTTTTTGAGGATGAATAAGGTCGAAAACGAAGAT-GCATAT 101 * * * ** * ***** **** ** * ** * * * * * ** consensus_8096#0 TCATTCGATACTATGGAAATGCATTCCCCAACGTCGTTTAATTGCTTTATGGACTGAGCT 417 consensus_8096#1 TTCTTCTCTACTTT-----CTTCTTTAGTAATAGTGTTCACAT------TGAAACAATCT 150 * *** **** * ** ** *** * * ** * * ** consensus_8096#0 TTTAGACAACAAGCCTTGAGATAGTCAGCTCCTTCGGAAAAACAACTGCTTGGATCCAGG 477 consensus_8096#1 AAT------TAAATCTCGCAGCAGAAAACTAGTACATAAGTGTGATTGGAC--AATGATT 202 * ** ** * ** * ** * * ** * ** * * consensus_8096#0 AACCTGAACAGTGA-CATAGTTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTG 536 consensus_8096#1 TTTCCGAGCTGTCAGCAAAATTTCCAACGGTGGCCGCAATTGTTACAATAGACAAAAGTG 262 * ** * ** * ** * **************************************** consensus_8096#0 GCCATTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTA 596 consensus_8096#1 GTCATTGGTTCATCTGCACTACGAGTTTGGACCTGATTATATGTACACTTGGTTTGCTTA 322 * ********************************************************** consensus_8096#0 CACTTTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCT 656 consensus_8096#1 CACTTTCCACATCGTAATAAATCAGTTTCTGTACCACCAGTTACAGCCATTTGATGGTCT 382 ************************************************************ consensus_8096#0 TCTATAGTTTCTTTAGTATATTTCTCACGAAGTTCTTTCATTTCTTTACTAGCCATCTCT 716 consensus_8096#1 TCTATAGTTTCTTTAGTATATTTCTCACGAAGTTCTTTCATTTCTTTACTAGCCATCTCT 442 ************************************************************ consensus_8096#0 TCT--------------------------------------------------------- 719 consensus_8096#1 TCTGATGTCATAGATGCTAGTTTATCCGGACTCACGTGTCCCATTAGGACATTAAGTCGC 502 *** consensus_8096#0 ------------------------- consensus_8096#1 AAATTGGGATTATTAGAATCGCGTA 527 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||