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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 920 fasta sequence
[CCCTCCGAGGCCANAATTCGGCACGAGGAAAAAAACTACATACCTTCCATTTGGTTAAATAATATTTACACGTAATTTTCAACTGTTGAAACCACTTATCCAAAAATTTAGAATCAAATTAGAAAATAATATTTGTTTTTAGTTCTGACATTATACGATTTAAGTTAGTCGTTTGCTTGTATACCATTATAGTATCTCGAGCTTTTTGTGTTCTGTACATTGATTTTAGGTACTTCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAATGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGTCGTAAGGAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAGCGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCTCAATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATGTTGGCTGACGAGTGTGATGCAATCAGGTTATTCCACTTTAAAGCA-ATTTTTAATGATTCATTTAACACT--AACGANCAGTGGACCGATTACTTTCTTTAGTAATTCTCTGATTAAA-CGTATNTGGTG-GTATGATTTTATTGTACAGNTAANTACCTTACTAGATTNTTTGATATAAGGGCTTCGATCTGACTAGAGTTTTTTATTGAATGCANATGNTANTGGNTGGTAAGCTNCTGCACAAAATACNTTTCTACACTCTCTGTAGTAATAGCTATGGGATAAAT]
[+] EMBL CD081984 [CCCTCCGAGGCCANAATTCGGCACGAGGAAAAAAACTACATACCTTCCATTTGGTTAAATAATATTTACACGTAATTTTCAACTGTTGAAACCACTTATCCAAAAATTTAGAATCAAATTAGAAAATAATATTTGTTTTTAGTTCTGACATTATACGATTTAAGTTAGTCGTTTGCTTGTATACCATTATAGTATCTCGAGCTTTTTGTGTTCTGTACATTGATTTTAGGTACTTCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAATGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGTCGTAAGGAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAGCGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCTCAATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATGTTGGCTGACGAGTGTGATGCAATCAGGTTATTCCACTTTAAAGCA ATTTTTAATGATTCATTTAACACT AACGANCAGTGGACCGATTACTTTCTTTAGTAATTCTCTGATTAAA CGTATNTGGTG GTATGATTTTATTGTACAGNTAANTACCTTACTAGATTNTTTGATATAAGGGCTTCGATCTGACTAGAGTTTTTTATTGAATGCANATGNTANTGGNTGGTAAGCTNCTGCACAAAATACNTTTCTACACTCTCTGTAGTAATAGCTATGGGATAAAT]
[+] EMBL CD081962 [ gAATTCGGCACGAGG ACAAAACTACATACCTTCCATTTGGTTAAATAATATTTACACGTAATTTTCAACTGTTGAAACCACTTATCCAAAAATTTAGAATCAAATTAGAAAATAATATTTGTTTTTAGTTCTGACATTATACGATTTAAGTTAGTCGTTTGCTTGTATACCATTATAGTATCTCGAGCTTTTTGTGTTCTGTACATTGATTTTAGGTACTTCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAATGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGTCGTAAGGAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAGCGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCTCAATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATGTTGGCTGACGAGTGTGATGCAATCAGGTTATTCCACTTT AAGCANATTNTTAATGATTCATTTAACACTAAAACGA CAGTGGACCGNATACTNTCTTTAGTAATTCTCTGATTAAANCGTAT TGGTGTAAATGA TTTATTGTACAGNTAANTACCTTACTAGA TNNTTGATAT AGGGCTTCGA CTGACTAGAG TTTTTATTTGATGCANATG TA TGG TGGTAAGCT CTGC C AAATAC TTCT CACTCT TG AGTAATA CT TGGat ]
consensusID : consensus_8098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 846 fasta sequence
[CTACCAGCCAAAAATTCGGCACGAGGTGATTTGTTGCATGATTCTCTCACTGCTCTCCACCAGCGCAGCTTACAAGGTACCTTCAGGCTAGACACAAACCTAGCAAACACTGAAGGTTTCAGGTCACATGCCTCAAGGTACTTCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAATGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGTCGTAAGGAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAGCGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCTCAATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATGTTGGCTGACGAGTGTGATGCAATCAGGTTATTCCACTTTAAGCAAATTTTTAATGATTCATTTAACACTAACGACAAGTGGACCGATTACTTTCTGTTTAGTAATTCTCTGATTAAACGTATTTGGTGTAATGATTTTATTGTACAGTTAAATACCTTACTAGATTTTTTGATATAAGGCTTTCGATCTGACTAGAGTTTTTTATTTGAATGCAGATGTTAGTGGTGGTAAAGCTCCTGCACAAAAATACTTTCTACAACTCTCTGTAGTAAATAGCTATGGAAT-AATNAAAATAGNTGATG]
[+] EMBL CD079751 [CTACCAGCCAAAAATTCGGCACGAGGTGATTTGTTGCATGATTCTCTCACTGCTCTCCACCAGCGCAGCTTACAAGGTACCTTCAGGCTAGACACAAACCTAGCAAACACTGAAGGTTTCAGGTCACATGCCTCAAGGTACTTCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAATGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGTCGTAAGGAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAGCGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCTCAATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATGTTGGCTGACGAGTGTGATGCAATCAGGTTATTCCACTTTAAGCAAATTTTTAATGATTCATTTAACACTAACGACAAGTGGACCGATTACTTTCTGTTTAGTAATTCTCTGATTAAACGTATTTGGTGTAATGATTNTATTGTACAGTTAAATACCTTACTAGATTTTTTGATATAAGGCTNTCGATCTGACTAGAGTTTTTTATTTGAATGCAGATGTTAGTGGTGGGTAAGCTCCTGCAC AAAATACTNTCTANCACTCTCTGTAGTAAATAGCTATGGAAT AATNANAATAGNTGAT ]
[-] EMBL CD074011 [ TACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAATGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGTCGTAAGGAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAGCGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCTCAATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATGTTGGCTGACGAGTGTGATGCAATCAGGTTATTCCACTTTAAGCAAATTTTTAATGATTCATTTAACACTAACGACAAGTGGACCGATTACTTTCTGTTTAGTAATTCTCTGATTAAACGTATTTGGTGTAATGATTTTATTGTACAGTTAAATACCTTACTAGATTTTTTGATATAAGGCTTTCGATCTGACTAGAGTTTTTTATTTGAATGCAGATGTTAGTGGTGGTAAAGCTCCTGCACAAAAATACTTTCTACAACTCTCTGTAGTAAATAGCTATGGAATAAATAAAAATAGTTGATG]
[-] EMBL CD076328 [ TCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAACGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCCCAATTCAACATATTTTGAATGTAATAAATTCCTTCAAGAGTATATTGGCTGACGAGTGTGATGCAATCAGGTTATTCCCCTTTAAGCAAATTTTTAATGATTCATTTAACACTAACGACAAGTGGACCGATTACTTTCTGTTTAGTAATTCTCTGATTAAACGTATTTGGTGTAATGATTTTATTGTACAGTTAAATACCTTACTAGATTTTTTGATATAAGGCTTTCGATTTGACTAGAGTTTTTTATTTGAATGCAGATGTTAGTGGTGGTAAAGCTCCTGCACAAAAATACTTTTTACAACTCTCTGTAGTAAATAGCTATGGAAT AAataa ]
consensusID : consensus_8098#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[CCTCCGAGGCCAATAATTCGGCACGAGGCTCACTGCTCTCTACCAGCGCAGCTTACAAGGTACCTTCAGGCTAGACACAAACCTAGCAAACACTGAAGGTTTCAGGTCACATGCCTCAAGGTACTTCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAATGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGGCGTAAGGAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAACGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTANACAGTCGCCTTCCTAAAGTTGTCCCAATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATATTGGCTGACGAGTGTGATGCAATCAGGTTATTCCACTTTAAGCAAATTTTTAATGATTCATTTAACACTAACGANCAGTGGACCGATTA]
[+] EMBL CD082737 [CCTCCGAGGCCAATAATTCGGCACGAGGCTCACTGCTCTCTACCAGCGCAGCTTACAAGGTACCTTCAGGCTAGACACAAACCTAGCAAACACTGAAGGTTTCAGGTCACATGCCTCAAGGTACTTCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAATGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGGCGTAAGGAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAACGAACTCATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCATTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCATTTGCCGAGACCGTTACAAACCATTACGCCCTANACAGTCGCCTTCCTAAAGTTGTCCCAATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATATTGGCTGACGAGTGTGATGCAATCAGGTTATTCCACTTTAAGCAAATTTTTAATGATTCATTTAACACTAACGANCAGTGGACCGATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8098#1 ------------------------------------------------------------
consensus_8098#2 ------------------------------------------------------------
consensus_8098#0 CCCTCCGAGGCCANAATTCGGCACGAGGAAAAAAACTACATACCTTCCATTTGGTTAAAT 60
consensus_8098#1 -------------------------------CTACCAG-CCAAAAATTCGGCACGAGGTG 28
consensus_8098#2 ------------------------------CCTCCGAGGCCAATAATTCGGCACGAGG-- 28
consensus_8098#0 AATATTTACACGTAATTTTCAACTGTTGAAACCACTTATCCAAAAATTTAGAATCAAA-- 118
* * **** **** * * *
consensus_8098#1 ATTTGTTGCATGATTCTCTCACTGCTCTCCACCAGCGCAGCTTACAAGGTA-CCTTCAGG 87
consensus_8098#2 -----------------CTCACTGCTCTCTACCAGCGCAGCTTACAAGGTA-CCTTCAGG 70
consensus_8098#0 --TTAGAAAATAATATTTGTTTTTAGTTCTGACATTATACGATTTAAGTTAGTCGTTTGC 176
* ** ** * * *** ** * * *
consensus_8098#1 CTAGACACAAACCTAGCAAACACTGAAGGTTTCAGGTCACATGCCTCAA-----GGTACT 142
consensus_8098#2 CTAGACACAAACCTAGCAAACACTGAAGGTTTCAGGTCACATGCCTCAA-----GGTACT 125
consensus_8098#0 TTGTATACCATTATAGTA--TCTCGAGCTTTTTGTGTTCTGTACATTGATTTTAGGTACT 234
* * ** * *** * ** *** ** * * * * ******
consensus_8098#1 TCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAA 202
consensus_8098#2 TCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAA 185
consensus_8098#0 TCAGATAACTCCTGCGGATATACTGATCATATGCAAATTATATCCAAGGCTGTTCGAGAA 294
************************************************************
consensus_8098#1 TGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGTCGTAAG 262
consensus_8098#2 TGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGGCGTAAG 245
consensus_8098#0 TGGGATTCCGCATTTATTTCATTCACAAAGTCTTGCAAACACCTATATGAAAGTCGTAAG 354
***************************************************** ******
consensus_8098#1 GAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAGCGAACTC 322
consensus_8098#2 GAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAACGAACTC 305
consensus_8098#0 GAAAATAATCTGCTAGTTGATGTCCAACCGTGCTTTTCATTACCAATTCTAAGCGAACTC 414
**************************************************** *******
consensus_8098#1 ATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCA 382
consensus_8098#2 ATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCA 365
consensus_8098#0 ATTGAAACACGCTTAAGTATTTCCATGAAATTAGCTGTTGGCAAATATCAAGAAAAATCA 474
************************************************************
consensus_8098#1 TTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCA 442
consensus_8098#2 TTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCA 425
consensus_8098#0 TTCGATGCCAGAGATAAATTTGATCATTCAACGGATCACCTATTTTCTGCTCTAAATTCA 534
************************************************************
consensus_8098#1 TTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCTCA 502
consensus_8098#2 TTTGCCGAGACCGTTACAAACCATTACGCCCTANACAGTCGCCTTCCTAAAGTTGTCCCA 485
consensus_8098#0 TTTGCCGAGACCGTTACAAACCATTACGCCCTAAACAGTCGCCTTCCTAAAGTTGTCTCA 594
********************************* *********************** **
consensus_8098#1 ATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATGTTGGCTGACGAGTGTGAT 562
consensus_8098#2 ATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATATTGGCTGACGAGTGTGAT 545
consensus_8098#0 ATTCAACATATTCTGAATGTAATAAATTCCTTCAAGAGTATGTTGGCTGACGAGTGTGAT 654
***************************************** ******************
consensus_8098#1 GCAATCAGGTTATTCCACTTTAAGCAAATTTTTAATGATTCATTTAACACTAACGACAAG 622
consensus_8098#2 GCAATCAGGTTATTCCACTTTAAGCAAATTTTTAATGATTCATTTAACACTAACGANCAG 605
consensus_8098#0 GCAATCAGGTTATTCCACTTTAAAGCAATTTTTAATGATTCATTTAACACTAACGANCAG 714
*********************** ****************************** **
consensus_8098#1 TGGACCGATTACTTTCTGTTTAGTAATTCTCTGATTAAACGTATTTGGTGTAATGATTTT 682
consensus_8098#2 TGGACCGATTA------------------------------------------------- 616
consensus_8098#0 TGGACCGATTACTTTC--TTTAGTAATTCTCTGATTAAACGTATNTGGTGGTATGATTTT 772
***********
consensus_8098#1 ATTGTACAGTTAAATACCTTACTAGATTTTTTGATATAAGGCTTTCGATCTGACTAGAGT 742
consensus_8098#2 ------------------------------------------------------------
consensus_8098#0 ATTGTACAGNTAANTACCTTACTAGATTNTTTGATATAAGGGCTTCGATCTGACTAGAGT 832
consensus_8098#1 TTTTTATTTGAATGCAGATGTTAGTGGTGGTAAAGCTCCTGCACAAAAATACTTTCTACA 802
consensus_8098#2 ------------------------------------------------------------
consensus_8098#0 TTTTTATT-GAATGCANATGNTANTGGNTGGTAAGCTNCTGCACAAAATACNTTTCTACA 891
consensus_8098#1 ACTCTCTGTAGTAAATAGCTATGGAATAATNAAAATAGNTGATG 846
consensus_8098#2 --------------------------------------------
consensus_8098#0 -CTCTCTGTAGTAA-TAGCTATGGGATAAAT------------- 920
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||