These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8102#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1265 fasta sequence [ACGGTACTTCAAGCTATTCAATCAATGATGTTCCCCAACTATCATAAATTCCTAACTACGAGTTTCCGTAGTTACAGTGCCAAGAAACTGCTTCCGAGGTACGATATAGTAATTGTCGGTGGTGGGATGGTTGGATTTGGTTTGGCTGCCGTTGCAGCAGCCTCCAAATTTCTCGGCGAGAA-AAATATTTTATTGCTAGAAAGTTCTGGTAAAAAAACGTATCAACGTAAAGAAGAATATGAAAATCGTGTCGTTGCTCTTAACGACCTTTCGGTAAACATGCTGAAAAATATTGGTGTCT-GGGAATTTATTCAGTCATTCCGTTCTCAGCCTGTAAATAAAATGAAAGTATGGGAAACAAAGTCAAACCTTTACTTAACATTTCAACGCAATCCCTTGGCATATATAGTAGAAAATGATTTAGTTATTGAATCACTTCGCAATCATCTGGAATCGATTAATAATTCTCCAAATGTGACAATATTATATGAAGCACAAGCTGAAAACA-TCAGCTACCTTCTCGAGATCATCCAGAACA-TTAG-TCGTTT-GNCG-TC-ACAAAGGA-ANAG-ATAAACGGGAAACTGTTGAAACAGATCTACTTGTTGGTGCCGATGGGTTCAATTCACTTGTCCGTAAAACAGCTAATATTCATACAATTGGTTGGAATCATAATCAAAAAGCAATTGTAGCAACTTTAAAATTGGAACAGGCTAATAATGAATCTATCGCTTGGCAAAGGTTTCTACCAACAGGCCCAATTGCATTACTCCCATTATCGAAAGAGTATACATCATTGGTATGGAGTACAACTTCGTATGAAGCTGATCGTTTGATGAATTTAAAAGATTCAGATTNNTATTC-AGAGTTGAATGACTGTTTGACTAAACCTAGTGAATCGATGTCACCAATAGGTACAGTTCTCAGTAACGTGGGACAATGTTTTGCTGGTGTTGTTGATTACTTTGGTAAATCAAAT-AAATCTACAGAAAATGAAAGTGAATCCAGCTCATTTTCCAACACCATCAGTAGTATCAATCCAACCAAATACGAAAAGGGCTTGTTTCCCTCTAGGTTTTCAACATGCAATCATCTATTTGCCATAATTCTAAACTATCATATTTAATAAATAAGTTTATCACAAATATTCGTGGAACTGGAATGAGTACTATTCAATCTAGTCAAGTATTAAAGGAATTTTTGATGGGAGTNCGCTGTCACTGGACAAATCGGAACATCACAATCCAAAACCCACTTATTGCTTGTAGTTG] [+] EMBL CD112490 [ACGGTACTTCAAGCTATTCAATCAATGATGTTCCCCAACTATCATAAATTCCTAACTACGAGTTTCCGTAGTTACAGTGCCAAGAAACTGCTTCCGAGGTACGATATAGTAATTGTCGGTGGTGGGATGGTTGGATTTGGTTTGGCTGCCGTTGCAGCAGCCTCCAAATTTCTCGGCGAGAACAAATATTTTATTGCTAGAAAGTTCTGGTAAAAAAACGTATCAACGTAAAGAAGAATATGAAAATCGTGTCGTTGCTCTTAACGACCTTTCGGTAAACATGCTGAAAAATATTGGTGTCT GGAAATTTATTCAG ] [+] EMBL SM961 [ TATAGTAATTGTCGGTGGTGGGATGGTTGGATTTGGTTTGGCTGNCGTTGCAGCAGNCTCCAAATTTCTCGGNAAGAA AAATATTTTATTGCTAGAAAGTTCTGGTAAAAAAACGTATCAACGTAAAGAAGAATATGAAAATCGTGTCGTTGCTCTTAACGACCTTTCGGTAAACATGCTGAAAAATATTGGTGTNTGGGGAATTTATCCAGTCATTCCGTTCTCAGCCTGTAAATAAAATGAAAGTATGGGAAACAAAGTCAAACCTTTACTTAACATTTCAACGCAATCCCTTGGCATATATAGTAGAAAATGATTTAGTTATTGAATCACTTCGCAATCATCTGGAATCGATTAATAATTCTCCAAATGTGACAATATTATATGAAGCACAAGCTGAAAACA TCAGCTACCTTCTCGAGATCATCCAGAACA TTAG TCGTTT GNCG TC ACAAAGGA ANAG ATTAACGGG AACTGTGGAA AGATCTNCTGGTGGGgcg ] [+] EMBL CD154139 [ GGAATTTATTCAGTCATTCCGTTCTCAGCCTGTAAATAAAATGAAAGTATGGGAAACAAAGTCAAACCTTTACTTAACATTTCAACGCAATCCCTTGGCATATATAGTAGAAAATGATTTAGTTATTGAATCACTTCGCAATCATCTGGAATCGATTAATAATTCTTCAAATGTGACAATATTATATGAAGCACAAGCTGAAAACATTCAGCTACCTTCTCGAGATCATCCAGAACATTTAGTTCGTTTAGACGTTCAACAAAGGACACAGAATAAACGGGAAACTGTTGAAACAGATCTACTTGTTGGTGCCGATGGGTTCAATTCACTTGTCCGTAAAACAGCTAATATTCATACAATTGGTTGGAATCATAATCAAAAAGCAATTGTAGCAACTTTAAAATTGGAACAGGCTAATAATGAATCTATCGCTTGGCAAAGGTTTCTACCAACAGGCCCAATTGCATTACTCCCATTATCGAAAGAGTATACATCATTGGTATGGAGTACAACTTCGTATGAAGCTGATCGTTTGATGAATTTAAAAGATTCAGATTNNTATTC AGAGTTGAATGACTGTTTGACTAAACCTAGTGAATCGATGTCACCAATAGGTAC ] [+] EMBL CD139190 [ AAACGGGAAACTGTTGAAACAGATCTACTTGTTGGTGCCGATGGGTTCAATTCACTTGGCCGTAAAACAGCTAATATTCATACAATTGGTTGGAATCATAATCAAAAAGCAATTGTAGCAACTTTAAAATTGGAACAGGCTAATAAAGAATCTATCGCTTGGCAAAGGTTTCTACCAACAGGCCCAATTGCATTACTCCCATTATCGAAAGAGTATACATCATTGGTATGGAGTACAACTTCGTATGAAGCTGATCGTTTGATGAATTTAAAAGATTCAGATT TTATTCAAGAGTTGAATGACTGTTTGACTAAACCTAGTGAATCGATGTCACAAATAGGTACAGTTCTCAGTAACGTGGGACAATGTTTTGCTGGTGTTGTTGATTACTTTGGTAAATCAAAT AAATCTA ] [-] EMBL SM765 [ GGGACAATGTTTTGCTGGTGTTGTTGATTACTTTGGTAATCCAAATAAAATCTACAGAAAATGAAAGTGAATCCAGCTCATTTTCCAACACCATCAGTAGTATCAATCCAACCAAATACGAAAAGGGCTTGTTTCCCTCTAGGTTTTCAACATGCAATCATCTATTTGCCATAATTCTAAACTATCATATTTAATAAATAAGTTTATCACAAATATTCGTGGAACTGGAATGAGTACTATTCAATCTAGTCAAGTATTAAAGGAATTTTTGATGGGAGTNCGCTGTCACTGGACAAATCGGAACATCACAATCCAAAACCCACTTATTGCTTGTAGTTG] consensusID : consensus_8102#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [AATCCTCAGACAATGTTCATGTTTTAAGTTTTTTTATCTTATACATCTATTTCAGTTATGTATATGACTAATTAACTGATAAATTTTCTTCCTCTTTTTATATTCATATCATCAGGCTAATAATGAATCTATCGCTTGGCAAAGGTTTCTACCAACAGGCCCAATTGCATTACTCCCATTATCGAAAGAGTATACATCATTGGTATGGAGTACAACTTCGTATGAAGCTGATCGTTTGATGAATTTAAAAGATTCAGATTTTATTCAAGAGTTGAATGACTGTTTGGTAAGTCGTGAAATCCCTTTATATGTACCTAATCTTTAATGATTGTATGAGAAAATTATCTGCACTAAGTTCACGGACAATTTATTAAACCTGATGCAATTCTCCAAGCAACAAATTTTTTCTAGAACCCTAACTTGTTTTCCAGGTCCAATGTTAAAATCTCTGTGTTTAGAATATTTCATCCAGTTTGGTATATTAAAGCTACAGTGCTAATGTTACAGTCGTTAAGTGGTAAGATATTCATAATTCTGNNCATATTGGTTATCTTTTGCCAAATAT] [+] EMBL CD178781 [AATCCTCAGACAATGTTCATGTTTTAAGTTTTTTTATCTTATACATCTATTTCAGTTATGTATATGACTAATTAACTGATAAATTTTCTTCCTCTTTTTATATTCATATCATCAGGCTAATAATGAATCTATCGCTTGGCAAAGGTTTCTACCAACAGGCCCAATTGCATTACTCCCATTATCGAAAGAGTATACATCATTGGTATGGAGTACAACTTCGTATGAAGCTGATCGTTTGATGAATTTAAAAGATTCAGATTTTATTCAAGAGTTGAATGACTGTTTGGTAAGTCGTGAAATCCCTTTATATGTACCTAATCTTTAATGATTGTATGAGAAAATTATCTGCACTAAGTTCACGGACAATTTATTAAACCTGATGCAATTCTCCAAGCAACAAATTTTTTCTAGAACCCTAACTTGTTTTCCAGGTCCAATGTTAAAATCTCTGTGTTTAGAATATTTCATCCAGTTTGGTATATTAAAGCTACAGTGCTAATGTTACAGTCGTTAAGTGGTAAGATATTCATAATTCTGNNCATATTGGTTATCTTTTGCCAAATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8102#0 ACGGTACTTCAAGCTATTCAATCAATGATGTTCCCCAACTATCATAAATTCCTAACTACG 60 consensus_8102#1 ------------------------------------------------------------ consensus_8102#0 AGTTTCCGTAGTTACAGTGCCAAGAAACTGCTTCCGAGGTACGATATAGTAATTGTCGGT 120 consensus_8102#1 ------------------------------------------------------------ consensus_8102#0 GGTGGGATGGTTGGATTTGGTTTGGCTGCCGTTGCAGCAGCCTCCAAATTTCTCGGCGAG 180 consensus_8102#1 ------------------------------------------------------------ consensus_8102#0 AAAAATATTTTATTGCTAGAAAGTTCTGGTAAAAAAACGTATCAACGTAAAGAAGAATAT 240 consensus_8102#1 ------------------------------------------------------------ consensus_8102#0 GAAAATCGTGTCGTTGCTCTTAACGACCTTTCGGTAAACATGCTGAAAAATATTGGTGTC 300 consensus_8102#1 ------------------------------------------------------------ consensus_8102#0 TGGGAATTTATTCAGTCATTCCGTTCTCAGCCTGTAAATAAAATGAAAGTATGGGAAACA 360 consensus_8102#1 ------------------------------------------------------------ consensus_8102#0 AAGTCAAACCTTTACTTAACATTTCAACGCAATCCCTTGGCATATATAGTAGAAAATGAT 420 consensus_8102#1 ------------------------------------------------------------ consensus_8102#0 TTAGTTATTGAATCACTTCGCAATCATCTGGAATCGATTAATAATTCTCCAAATGTGACA 480 consensus_8102#1 ------------------------------------------------------------ consensus_8102#0 ATATTATATGAAGCACAAGCTGAAAACATCAGCTACCTTCTCGAGATCATCCAGAACATT 540 consensus_8102#1 ------------------------------------------------------------ consensus_8102#0 AGTCGTTTGNCGTCACAAAGGAANAGATAAACGGGAAACTGTTGAAACAGATCTACTTGT 600 consensus_8102#1 -------------------------------------------------AATCCTCA-GA 10 *** * * consensus_8102#0 TGGTGCCGATGGGTTCAATTCACTTGTCCGTAAAACAGCTAATATTCATACAATTGGTTG 660 consensus_8102#1 CAATGTTCATGTTTTAAGTTTTTTTATCTTATACATCTATTTCAGTTATGTATATGACT- 69 ** *** ** * ** ** ** * * * * * ** * ** * consensus_8102#0 GAATCATAATCAAAAAGCAATTGTAGCAACTTTAAAATTGGAACA---GGCTAATAATGA 717 consensus_8102#1 -AAT--TAACTGATAAATTTTCTTCCTCTTTTTATATTCATATCATCAGGCTAATAATGA 126 *** *** * ** * * **** * * * ** ************ consensus_8102#0 ATCTATCGCTTGGCAAAGGTTTCTACCAACAGGCCCAATTGCATTACTCCCATTATCGAA 777 consensus_8102#1 ATCTATCGCTTGGCAAAGGTTTCTACCAACAGGCCCAATTGCATTACTCCCATTATCGAA 186 ************************************************************ consensus_8102#0 AGAGTATACATCATTGGTATGGAGTACAACTTCGTATGAAGCTGATCGTTTGATGAATTT 837 consensus_8102#1 AGAGTATACATCATTGGTATGGAGTACAACTTCGTATGAAGCTGATCGTTTGATGAATTT 246 ************************************************************ consensus_8102#0 AAAAGATTCAGATTNNTATTCAGAGTTGAATGACTGTTTGACTAAACCTAGTGAATCGAT 897 consensus_8102#1 AAAAGATTCAGATTTTATTCAAGAGTTGAATGACTGTTTGG-TAAGTC--GTGAAATCCC 303 ************** * ******************* *** * ***** consensus_8102#0 GTCACCAATAGGTACAGTTCTCAGTAAC-GTGGGACAATGTTTTGCTGGTGTTGTTGATT 956 consensus_8102#1 TTTAT--ATGTACCTAATCTTTAATGATTGTATGAGAAAATTAT-CTG----CACTAAGT 356 * * ** * * * * * * ** ** ** ** * *** * * * consensus_8102#0 ACTTTGGTAAATCAAATAAATCTACAGAAAATGAAAGTGAATCCAGCTCATTTTCCAACA 1016 consensus_8102#1 -TCACGGACAATTTATTAAACCTGATGCAATTCTCCAAGCAACAAATT--TTTTCTAGAA 413 ** *** * **** ** * ** * * * * * * ***** * * consensus_8102#0 CCATCAGTAGTATCAATCCAACCAAATACGAAAAGGGCTTGTTTCCCTCTAGGTTTTCAA 1076 consensus_8102#1 CCCTAACTTGTTTT--CCAGGTCCAATGTTAAAA---TCTCTGTGTTTAGAATATTTCAT 468 ** * * * ** * * * *** **** * * * * * ***** consensus_8102#0 CATGCAATCATCTATTT--GCCATAATTCTAAACTATCATATTTAATAAATAAGTTTATC 1134 consensus_8102#1 CCAGTT-TGGTATATTAAAGCTACAGTGCTAA--TGTTACAGTCGTTAAGTGG---TA-- 520 * * * * **** ** * * * **** * * * * * *** * ** consensus_8102#0 ACAAATATTCGTGGAACTGGAATGAGTACTATTCAATCTAGTCAAGTATTAAAGGAATTT 1194 consensus_8102#1 --AGATATTCATAATTCTGNNCATATTGGTTATC--TTTTGCCAAATAT----------- 565 * ****** * *** * * * ** * * * *** *** consensus_8102#0 TTGATGGGAGTNCGCTGTCACTGGACAAATCGGAACATCACAATCCAAAACCCACTTATT 1254 consensus_8102#1 ------------------------------------------------------------ consensus_8102#0 GCTTGTAGTTG 1265 consensus_8102#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||