cluster # 8106

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Schistosoma mansoni
cluster # 8106 cluster # 8106 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8106#0 length = 820 sequences # 5

consensus_8106#1 length = 338 sequences # 1

consensusID : consensus_8106#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 820
fasta sequence

                              [ATCGCAGTAACATAGCTGAATTGGAAGAAAAAGTTCGAACATATTTTGAAGGTGTTAGTATTGATGAATTCTTACTTCCAACTGAACCTGATATTGGTGATGACCAAAGTGAAGATACACCATCTGTCGTGGTAGAAGAAGGAAATACCTACCATCTGGATGGACATATTATGATAAGCTACAGTCATAACGATTACAAAATAGCACTTAAAATTAAAGAAAGCTTGGAAAATGAGGAAATCAAGTTTTGGATTGACAAAGAACACATGGTTCAACATGTTAAGATTTTAGATGCTATGGCAAACGCTGTAGAAAATGCTGCTATCGTATTAATACTTTTTTCGAAATCATACCAAGATAGTGAAAATACTAAAGCAGAAGCTGAATACACTCGAAAACTAAATAAACCAGCTATTTTTCTTCGTGTTGAGTCGAAGTTTGTTCCAAGTGGTTGGCTGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAAATTTGAAGAATTATGCACTACAATTCACAATATTAGTCGTGGATCGATCATTGTAAAACCCAAGAAACC-AAAAAAAACACAAGAATATGCATGCGTTTCAATGTGAAGAAATGGAGATTCAAAAAGTACTGAGTCCAACTTAAAAACCTACTTTGATCAGCTGGAAATCCTTCTCCTTTATGNATTNTTTTACTCTAAATCCG-TTATTGGTTTAT-AATGATTTTACTATCAGTGATCAGAAACTTTACT-ACGCTTATTNAACTNT-ATATTTNTCTATCACATTG-AATANTATATATGGTA]

[+] EMBL CD079445             [ATCGCAGTAACATAGCTGAATTGGAAGAAAAAGTTCGAACATATTTTGAAGGTGTTAGTATTGATGAATTCTTACTTCCAACTGAACCTGATATTGGTGATGACCAAAGTGAAGATACACCATCTGTCGTGGTAGAAGAAGGAAATACCTACCATCTGGATGGACATATTATGATAAGCTACAGTCATAACGATTACAAAATAGCACTTAAAATTAAAGAAAGCTTGGAAAATGAGGAAATCAAGTTTTGGATTGACAAAGAACACATGGTTCAACATGTTAAGATTTTAGATGCTATGGCAAACGCTGTAGAAAATGCTGCTATCGTATTAATACTTTTTTCGAAATCATACCAAGATAGTGAAAATACTAAAGCAGAAGCTGAATACACTCGAAAACTAAATAAACCAGCTATTTTTCTTCGTGTTGAGTCGAAGTTTGTTCCAAGTGGTTGGCTGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAAATTTGAAGAATTATGCACTACAATTCACAATATTAGTCGTGGATCGATCATTGTANAACCCAAGAAACC AAAAAAAACACAAGAATATGCATGCGTTTCAATGTGAAGAAATGGAGATTCANAAAGTACTGAGTCCAACTTANAAACCTACTTTGATCAGCTGGAAATCCTTCTCCTTTATGNATTNTTTTACTCTAAATCCG TTATTGGTTTAT AATGATTTTACTATCAGTGATCAGAAACTTTACT ACGCTTATTNAACTNT ATATTTNTCTATCACATTG AATANTATATATGG  ]
[-] EMBL CD073715             [                                                                                                                                                                                            AACGATTACAAAATAGCACTTAAAATTAAAGAAAGCTTGGAAAATGAGGAAATCAAGTTTTGGATTGACAAAGAACACATGGTTCAACATGTTAAGATTTTAGATGCTATGGCAAACGCTGTAGAAAATGCTGCTATCGTATTAATACTTTTTTCGAAATCATACCAAGATAGTGAAAATACTAAAGCAGAAGCTGAATACACTCGAAAACTAAATAAACCAGCTATTTTTTTTCGTGTTGAGTCGAAGTTTGTTCCAAGTGGTTGGCTGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAAATTTGAAGAATTATGCACTACAATTCACAATATTAGTCGTGGATCGATCATTGTAAAACCCAAGAAACC AAAAAAAACACAAGAATATGCATGCGTTTCAATGTGAAGAAATGGAGATTCAAAAAGTACTGAGTCCAACTTAAAAACCTACTTTGATCAGCTGGAAATCCTTCTCCTTTATGTATTTTTTTACTCT AATCCGTTTATT GTTTATAAATGATTTTACTATCAGTGATCAGAAACTTTACTAACGCTTATTTAACTTTAATATTGTTCTATCACATTGAAAAAAAATATAATGTA]
[+] EMBL CD181612             [                                                                                                                                                                                                                                                                                                                                                                                                          AAAACTAAATAAACCAGCTATTTTTCTTCGTGTTGAGTCGAAGTTTGTTCCAAGTGGTTGGCTGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAAATTTGAAGAATTATGCACTACAATTCACAATATTAGTCGTGGATCGATCATTGTAAAACCCAAGAAACC  AAAAAAACACAAGAATATGCATGCGTTTCAATGTGAAGAAATGAAGATTCAAAAAGTACTGAGTCCAACTTANAAA                                                                                                                                                               ]
[-] EMBL CD181352             [                                                                                                                                                                                                                                                                                                                                                                                                           AAACTAAATAAACCAGCTATTTTTCTTCGTGTTGAGTCGAAGTTTGTTCCAAGTGGTTGGCTGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAAATTTGAAGAATTATGCACTACAATTCACAATATTAGTCGTGGATCGATCATTGTAAAACCCAAGAAACCAAAAAAAAACACAAGAATATGCATGCGTTTCAATGTGAAGAAATGGAGATTCAAAAAGTACTGAGTCCAACTTAAAAAC                                                                                                                                                              ]
[-] EMBL CD181537             [                                                                                                                                                                                                                                                                                                                                                                                                           AAACTAAATAAACCAGCTATTTTTCTTCGTGTTGAGTCGAAGTTTGTTCCAAGTGGTTGGCTGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAAATTTGAAGAATTATGCACTACAATTCACAATATTAGTCGTGGATCGATCATTGTAAAACCCAAGAAACC AAAAAAAACACAAGAATATGCATGCGTTTCAATGTGAAGAAATGGAGATTCAAAAAGTACTGAGTCCAACTTAAAAAC                                                                                                                                                              ]




>consensus_8106#0
ATCGCAGTAACATAGCTGAATTGGAAGAAAAAGTTCGAACATATTTTGAAGGTGTTAGTA
TTGATGAATTCTTACTTCCAACTGAACCTGATATTGGTGATGACCAAAGTGAAGATACAC
CATCTGTCGTGGTAGAAGAAGGAAATACCTACCATCTGGATGGACATATTATGATAAGCT
ACAGTCATAACGATTACAAAATAGCACTTAAAATTAAAGAAAGCTTGGAAAATGAGGAAA
TCAAGTTTTGGATTGACAAAGAACACATGGTTCAACATGTTAAGATTTTAGATGCTATGG
CAAACGCTGTAGAAAATGCTGCTATCGTATTAATACTTTTTTCGAAATCATACCAAGATA
GTGAAAATACTAAAGCAGAAGCTGAATACACTCGAAAACTAAATAAACCAGCTATTTTTC
TTCGTGTTGAGTCGAAGTTTGTTCCAAGTGGTTGGCTGGGTTTCATAATGGGCGAGAGTC
GTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAAATTTGAAGAATTATGCACTA
CAATTCACAATATTAGTCGTGGATCGATCATTGTAAAACCCAAGAAACCAAAAAAAACAC
AAGAATATGCATGCGTTTCAATGTGAAGAAATGGAGATTCAAAAAGTACTGAGTCCAACT
TAAAAACCTACTTTGATCAGCTGGAAATCCTTCTCCTTTATGNATTNTTTTACTCTAAAT
CCGTTATTGGTTTATAATGATTTTACTATCAGTGATCAGAAACTTTACTACGCTTATTNA
ACTNTATATTTNTCTATCACATTGAATANTATATATGGTA

consensusID : consensus_8106#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [TGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAGATTTGAAGAATTATGCACTACAATTAAAAACACAAGAATATGCATGCGTTTCAATGTGAAGAAATGGTGATTCAAAAAGTACTGAGTCCAACTTAAAAACCTACTTTGATCAGCTGGAAATCCTTCTCCTTTATGTATTTTTTTACTCTAATCCGTTTATTGTTTATAAATGATTTTACTATCAGTGATCAGAAACTTTACTAACGCTTATTTAACTTTAATATTTTTCTATCACATTGAAAATATATATAATGTATTCTATGCGACATTTTGA]

[+] EMBL CD139811             [TGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAGATTTGAAGAATTATGCACTACAATTAAAAACACAAGAATATGCATGCGTTTCAATGTGAAGAAATGGTGATTCAAAAAGTACTGAGTCCAACTTAAAAACCTACTTTGATCAGCTGGAAATCCTTCTCCTTTATGTATTTTTTTACTCTAATCCGTTTATTGTTTATAAATGATTTTACTATCAGTGATCAGAAACTTTACTAACGCTTATTTAACTTTAATATTTTTCTATCACATTGAAAATATATATAATGTATTCTATGCGACATTTTGA]




>consensus_8106#1
TGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGG
AAAGATTTGAAGAATTATGCACTACAATTAAAAACACAAGAATATGCATGCGTTTCAATG
TGAAGAAATGGTGATTCAAAAAGTACTGAGTCCAACTTAAAAACCTACTTTGATCAGCTG
GAAATCCTTCTCCTTTATGTATTTTTTTACTCTAATCCGTTTATTGTTTATAAATGATTT
TACTATCAGTGATCAGAAACTTTACTAACGCTTATTTAACTTTAATATTTTTCTATCACA
TTGAAAATATATATAATGTATTCTATGCGACATTTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8106#0      ATCGCAGTAACATAGCTGAATTGGAAGAAAAAGTTCGAACATATTTTGAAGGTGTTAGTA 60
consensus_8106#1      ------------------------------------------------------------
                                                                                  

consensus_8106#0      TTGATGAATTCTTACTTCCAACTGAACCTGATATTGGTGATGACCAAAGTGAAGATACAC 120
consensus_8106#1      ------------------------------------------------------------
                                                                                  

consensus_8106#0      CATCTGTCGTGGTAGAAGAAGGAAATACCTACCATCTGGATGGACATATTATGATAAGCT 180
consensus_8106#1      ------------------------------------------------------------
                                                                                  

consensus_8106#0      ACAGTCATAACGATTACAAAATAGCACTTAAAATTAAAGAAAGCTTGGAAAATGAGGAAA 240
consensus_8106#1      ------------------------------------------------------------
                                                                                  

consensus_8106#0      TCAAGTTTTGGATTGACAAAGAACACATGGTTCAACATGTTAAGATTTTAGATGCTATGG 300
consensus_8106#1      ------------------------------------------------------------
                                                                                  

consensus_8106#0      CAAACGCTGTAGAAAATGCTGCTATCGTATTAATACTTTTTTCGAAATCATACCAAGATA 360
consensus_8106#1      ------------------------------------------------------------
                                                                                  

consensus_8106#0      GTGAAAATACTAAAGCAGAAGCTGAATACACTCGAAAACTAAATAAACCAGCTATTTTTC 420
consensus_8106#1      ------------------------------------------------------------
                                                                                  

consensus_8106#0      TTCGTGTTGAGTCGAAGTTTGTTCCAAGTGGTTGGCTGGGTTTCATAATGGGCGAGAGTC 480
consensus_8106#1      ------------------------------------TGGGTTTCATAATGGGCGAGAGTC 24
                                                          ************************

consensus_8106#0      GTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAAATTTGAAGAATTATGCACTA 540
consensus_8106#1      GTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAGATTTGAAGAATTATGCACTA 84
                      *************************************** ********************

consensus_8106#0      CAATTCACAATATTAGTCGTGGATCGATCATTGTAAAACCCAAGAAACCAAAAAAAACAC 600
consensus_8106#1      CAATT-----------------------------------------------AAAAACAC 97
                      *****                                               ********

consensus_8106#0      AAGAATATGCATGCGTTTCAATGTGAAGAAATGGAGATTCAAAAAGTACTGAGTCCAACT 660
consensus_8106#1      AAGAATATGCATGCGTTTCAATGTGAAGAAATGGTGATTCAAAAAGTACTGAGTCCAACT 157
                      ********************************** *************************

consensus_8106#0      TAAAAACCTACTTTGATCAGCTGGAAATCCTTCTCCTTTATGNATTNTTTTACTCTAAAT 720
consensus_8106#1      TAAAAACCTACTTTGATCAGCTGGAAATCCTTCTCCTTTATGTATTTTTTTACTCTAATC 217
                      ****************************************** *** ***********  

consensus_8106#0      CCGTTATTGGTTTATAATGATTTTACTATCAGTGATCAGAAACTTTACTA-CGCTTATTN 779
consensus_8106#1      CGTTTATTGTTTATAAATGATTTTACTATCAGTGATCAGAAACTTTACTAACGCTTATTT 277
                      *  ****** **   *********************************** ******** 

consensus_8106#0      AACTNTA-TATTTNTCTATCACATTGAATANTATATATGGTA------------------ 820
consensus_8106#1      AACTTTAATATTTTTCTATCACATTGAA-AATATATATAATGTATTCTATGCGACATTTT 336
                      **** ** ***** ************** * *******  *                   

consensus_8106#0      --
consensus_8106#1      GA 338