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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1262 fasta sequence
[GAGGGTAAACTTAACTTCGGACTGTACATCCTGGTCAGGATCCATTATAGATAACTGATAGATAATCTCATCATCGTTTGATGGCCACCAATTTTCTAAAATTTCAATTTCATCCGACAATATTTGACGCTTCCTCAAATCGATTGGTAGAATAAATTCCAAAGAATCGTTACGGATTGGTGAAAGTGGCCAATAAGGTGGATTGTCATTTACATCACATACAAAAATATGTACTCGACTAGTATTCCAATGACCAGCAGCATCAGTAGCCATGACCTGAAATATATGCTCACGATTTGATTCGAAATCTAAAGAAGATCTAAGTGAGATCCAACCTTTTCCATCTATTTTAAACAATTTACGTAATGTTTGTAATTCAGGATTAAATAAAATTAACTTTTCTAAACTATCCGACTGATCTTGGAAATTCCACGTAAACTAAAATGTTCCGACGTTAAAGTGGATATTGGCCATAGAGAATAAGTGATGATATCTTGTTTATTGCCAGAATAACGACCACCCTGATCATTATCAGCATCATCATCCATAGCTGAAGTTCGAAGGAATTTTACATTGATTGGATAATCCTCTGGCAAGTCAATATGATATAATGGAGAATCAAAGTATGGTGTACAATCATTGACATCGACAAGTTCAATGATTAACGTTGTACGCACAATGATTGTAGGATTATATGACAAAGCATGCAATTCGATATTTAATTCATATATTGATTGAATCTCATAATTCAAAGGTTTCATCGAAAATATTTGACCGGTTTCAGAGTCGATTCTAAAGATACTTTGTTCATGTTGTGGTGACAGTGGTGATATGCCAGCTAGGTGCCATGAACGACTACTCCAATTACCCGGGTTAACATCACATACACCAACTTGACGTTCAGACATAAAATCATCCTCTAACAAACGTTGTGATGTGCATACAATCTCCGGTAGAACAATAGATGACTGGTTAGAAATTTGTATGTCAACCTGTATAGGATTTGAGCAGAGCACAACAGGGTCAGAATAAACAGGTGAATCACAAGCTTCGACTAACAACTGTTCTTTCCTGCCATCAGCAATAGACGGAGATAATGGTTCATTCAGTATAAGTAAACCAGTAGTTGAATCGATTGAAAATCGTTTAGATTCCCCCCCCTCATTGGATGTTGAACTGAATATTAAATAGACAATTTGAGCATTCTCTCCAATGTCGAAATCATAGGCTTTCAACTGTAACGGTAAAGTCATTGGAAAAAC]
[+] EMBL CD194440 [GAGGGTAAACTTAACTTCGGACTGTACATCCTGGTCAGGATCCATTATAGATAACTGATAGATAATCTCATCATCGTTTGATGGCCACCAATTTTCTAAAATTTCAATTTCATCCGACAATATTTGACGCTTCCTCAAATCGATTGGTAGAATAAATTCCAAAGAATCGTTACGGATTGGTGAAAGTGGCCAATAAGGTGGATTGTCATTTACATCACATACAAAAATATGTACTCGACTAGTATTCCAATGACCAGCAGCATCAGTAGCCATGACCTGAAATATATGCTCACGATTTGATTCGAAATCTAAAGAAGATCTAAGTGAGATCCAACCTTTTCCATCTATTTTAAACAATTTACGTAATGTTTGTAATTCAGGATTAAATAAAATTAACTTTTCTAAACTATCCGACTGATCTTGGAAATTCCACGTAAACTAAAATGTTCCGACGTTAAAGTGGATATTGGCCATAGAGAATAAGTGATGATATCTTGTTTATTGCCAGAATAACGACCACCCTGATCATTATCAG ]
[+] EMBL CD115262 [ ATTGGCCATAGAGAATAAGTGATGATATCTTGTTTATTGCCAGAATAACGACCACCCTGATCATTATCAGCATCATCATCCATAGCTGAAGTTCGAAGGAATTTTACATTGATTGGATAATCCTCTGGCAAGTCAATATGATATAATGGAGAATCAAAGTATGGTGTACAATCATTGACATCGACAAGTTCAATGATTAACGTTGTACGCACAATGATTGTAGGATTATATGACAAAGCATGCAATTCGATATTTAATTCATATATTGATTGAATCTCATAATTCAAAGGTTTCATCGAAAATATTTGACCGGTTTCAGAGTCGATTCTAAAGATACTTTGTTCATGTTGTGGTGACAGTGGTGATATGCCAGCTAGGTGCCATGAACGACTACTCCAATTACCCGGGTTAACATCACATACACCAACTTGACGTTCAGACATAAAATCATCCTCTAACAAACGTTGTGATGTGCATACA ]
[-] EMBL CD115656 [ AACGACTACTCCAATTACCCGGTTTAACATCACATACACCAACTTGACGTTCAGACATAAAATCATCCTCTAACAAACGTTGTGATGTGCATACAATCTCCGGTAGAACAATAGATGACTGGTTAGAAATTTGTATGTCAACCTGTATAGGATTTGAGCAGAGCACAACAGGGTCAGAATAAACAGGTGAATCACAAGCTTCGACTAACAACTGTTCTTTCCTGCCATCAGCAATAGACGGAGATAATGGTTCATTCAGTATAAGTAAACCAGTAGTTGAATCGATTGAAAATCGTTTAGATTCCCCCCCCTCATTGGATGTTGAACTGAATATTAAATAGACAATTTGAGCATTCTCTCCAATGTCGAAATCATAGGCTTTCAACTGTAACGGTAAAGTCATTGGAAAAAC]
consensusID : consensus_8107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 773 fasta sequence
[ATAGACAATTTGAGCATTCTCTCCAATGTCGAAATCATAGGCTTTCAACTGTAACGGTAAGGTCAACCTGTATAGGATTTGAGCAGAGCACAACAGGGTCAGAATAAACAGGTGAATCACAAGCTTCGACTAACAACTGTTCTTTCCTGCCATCAGCAATAGACGGAGATAATCGTTCATTCAGTAGAAGTAAACCAGTAGTTGAATCGATTGAAAATCGTTTAGATTGAAATAACTCATTGGATGTTGAACTGAATATTTTATAGACAATTTGAGCATTCTCTCCAATGTCGAAATCATAGGCTTTCAACTGTAACGGTAAAGTCATTGGAAAAACTTCTTCCTCAGATGGATTATACATGAATGGTAATAACGTCAGTTCATACTTGTCCTGTGCAAATATTGGCCGATTATCATTGATATCTCTTACAGAAATGTCTAATTTCATGAAATCCATTAGGCCACCACCATCTGTAGCTTGTATTAGTAAACTATATTGATTTTTCATTTCTCTATCCAATGAACGAGTCAAACGAACAGTACCATCACTAGGATCTATGCTGAACCACTCGTGCTTATCACCACCAGTTATATTGTAGACAATTTGTCCATATTTACCACGATCCATATCTTTAGCTGGTTGAATTCGATTAACAATTGATCCAACAGTTGTTAGTTCTGATATTTCCCACCATTCATATTTTGGTGAATCAAATCTAGGTGGATCCCAATTATATGGATCCAAATTAACTATGACATCACATGTACTTGAA]
[-] EMBL CD194877 [ATAGACAATTTGAGCATTCTCTCCAATGTCGAAATCATAGGCTTTCAACTGTAACGGTAAGGTCAACCTGTATAGGATTTGAGCAGAGCACAACAGGGTCAGAATAAACAGGTGAATCACAAGCTTCGACTAACAACTGTTCTTTCCTGCCATCAGCAATAGACGGAGATAATCGTTCATTCAGTAGAAGTAAACCAGTAGTTGAATCGATTGAAAATCGTTTAGATTGAAATAACTCATTGGATGTTGAACTGAATATTTTATAGACAATTTGAGCATTCTCTCCAATGTCGAAATCATAGGCTTTCAACTGTAACGGTAAAGTCATTGGAAAAACTTCTTCCTCAGATGGATTATACATGAATGGTAATAACGTCAGTTCATACTTGTCCTGTGCAAATATTGGCCGATTATCATTGATATCTCTTACAGAAATGTCTAATTTCATGAAATCCATTAGGCCACCACCATCTGTAGCTTGTATTAGTAAACTATATTGATTTTTCATTTCTCTATCCAATGAACGAGTCAAACGAACAGTACCATCACTAGGATCTA ]
[-] EMBL CD194889 [ AGCATTCTCTCCAATGTCGAAATCATAGGCTTTCAACTGTAACGGTAAGGTCAACCTGTATAGGATTTGAGCAGAGCACAACAGGGTCAGAATAAACAGGTGAATCACAAGCTTCGACTAACAACTGTTCTTTCCTGCCATCAGCAATAGACGGAGATAATCGTTCATTCAGTAGAAGTAAACCAGTAGTTGAATCGATTGAAAATCGTTTAGATTGAAATAACTCATTGGATGTTGAACTGAATATTTTATAGACAATTTGAGCATTCTCTCCAATGTCGAAATCATAGGCTTTCAACTGTAACGGTAAAGTCATTGGAAAAACTTCTTCCTCAGATGGATTATACATGAATGGTAATAACGTCAGTTCATACTTGTCCTGTGCAAATATTGGCCGATTATCATTGATATCTCTTACAGAAATGTCTAATTTCATGAAATCCATTAGGCCACCACCATCTGTAGCTTGTATTAGTAAACTATATTGATTTTTCATTTCTCTATCCAATGAACGAGTCAAACGAACAGTACCATCACTAGGATCTA ]
[+] EMBL CD187246 [ TGTATTAGTAAACTATATTGATTTTTCATTTCTCTATCCAATGAACGAGTCAAACGAACAGTACCATCACTAGGATCTATGCTGAACCACTCGTGCTTATCACCACCAGTTATATTGTAGACAATTTGTCCATATTTACCACGATCCATATCTTTAGCTGGTTGAATTCGATTAACAATTGATCCAACAGTTGTTAGTTCTGATATTTCCCACCATTCATATTTTGGTGAATCAAATCTAGGTGGATCCCAATTATATGGATCCAAATTAACTATGACATCACATGTACTTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8107#0 GAGGGTAAACTTAACTTCGGACTGTACATCCTGGTCAGGATCCATTATAGATAACTGATA 60
consensus_8107#1 ---------------------------------------------------------ATA 3
***
consensus_8107#0 GATAATCTCATCATCGTTTGATGGCCACCAATTTTCTAAAATTTCAATTTCATCCGACAA 120
consensus_8107#1 GACAATTTGAGCATTCTCT--CCAATGTCGAAATCATAGGCTTTCAACTGTAAC-GGTAA 60
** *** * * *** * * * * * ** ****** * * * * **
consensus_8107#0 TATTTGACGCTTCCTCAAATCGATTGGTAGAATAAATTCCAAAGAATCGTTACGGATTGG 180
consensus_8107#1 GGTC--AACCTGTATAGGATT--TGAGCAGAGCACA----ACAGGGTCAGAATAAACAGG 112
* * ** * ** * * *** * * * ** ** * * **
consensus_8107#0 TGAA--AGTGGCCAATAAGGTGGATTGTCATTTACATCACATACAAAAATATGTACTCGA 238
consensus_8107#1 TGAATCACAAGCTTCGACTAACAACTGTTCTTTCCTGC-CAT-CAGCAATA--GACGGAG 168
**** * ** * * *** *** * * *** ** **** **
consensus_8107#0 CTAGTATTCCAATGACCAGCAGCATCAGTAGCCATGACCTGAAATATATGCTCACGATTT 298
consensus_8107#1 ATAATCGTTCATTCAGTAGAAGTA-----AACCAGTAGTTGAATCGATTGAAAATCGTTT 223
** * * ** * * ** ** * * *** * **** ** * ***
consensus_8107#0 GATTCGAAATCTAAAGAAGATCTAAGTGAGATCCAACCTTTTCCATCTATTTTAAACAAT 358
consensus_8107#1 AGATTGAAAT---AACTCATTGGATGTTGAACTGAATATTTTATAGACAATTTGAGCATT 280
* ***** ** * * ** * ** **** * * *** * ** *
consensus_8107#0 TTACGTAATGTTTGTAATTCAGGATTAAA----TAAAATTAACTTTTCTAAACTATCCGA 414
consensus_8107#1 CTCTCCAATGTCGAAATCATAGGCTTTCAACTGTAACGGTAAAGTCATTGGAAAAACTTC 340
* ***** * *** ** * *** *** * * * * *
consensus_8107#0 CTGATCTTGGAAATTCCACGTAAACTAAAATGTTCCGACGTTAAAGTGGATATTGGCCAT 474
consensus_8107#1 TTCCTCAGATGGATTATACATGAATGGTAATAACGTCAGTTCATACTTGTCCTGTGCAAA 400
* ** *** ** * ** *** * * * * * * * ** *
consensus_8107#0 AGAGAATAAGTGATGATATCTTGTTTATTGCCAGAATAACGACCACCCTGATCATTATCA 534
consensus_8107#1 TATTGGCCGATTATCAT-TGATATCTCTTACAGAAATGTCTAATTTCATGAAATCCATTA 459
* ** ** * * * * ** * *** * * * *** ** *
consensus_8107#0 G--CATCATCATCCATAGCTGAAGTTCGAAGGAATTTTACATTGATTGGATAATCCTCTG 592
consensus_8107#1 GGCCACCACCATCTGTAGCTTGTATTAGTAAA----CTATATTGATTTTTCATTTCTCT- 514
* ** ** **** ***** ** * * ** ******* * * ****
consensus_8107#0 GCAAGTCAATATGATATAATGGAGAATCAAAGTATGGTGTACAATCATTGACATCGACAA 652
consensus_8107#1 -------------ATCCAATGAACGAGTCAAACGAACAGTACCATCACTAGGATCTAT-- 559
** **** * * ** **** **** * *** *
consensus_8107#0 GTTCAATGATTAACGTTGTACGCACAATGATTGTAGGATTATATGACAAAGCATGCAATT 712
consensus_8107#1 GCTGAACCACTCGTGCT-TATCACCACCAGTTAT---ATTGTA-GACAATTTGTCCATAT 614
* * ** * * * * ** ** ** * *** ** ***** * ** *
consensus_8107#0 CGATATTTAATTCATATATTGATTGAATCTCATAATTCAAAGGTTTCATCGAAAATATTT 772
consensus_8107#1 TTAC-CACGATCCATATCTTTAGCTGGTTG---AATTCGA-----TTAAC-AATTGATCC 664
* ** ***** ** * * ***** * * * * ** **
consensus_8107#0 GACCGGTTTCAGAGTCGATTCTAAAGATACTTTGTTCATGTTGTGGTGACAGTGGTGATA 832
consensus_8107#1 AACAGTTGTTAGTTCTGATATTT----CCCACCATTCATATTTTGGTGA-----ATCAAA 715
** * * * ** *** * * ***** ** ****** * * *
consensus_8107#0 TGCCAGCTAGGTGCCATGAACGACTACTCCAATTACCCGGGTTAACATCACATACACCAA 892
consensus_8107#1 T-CTAGGTGGATCCCAATTATATGGATCCAAATTAACTA---TGACATCACATGT----A 767
* * ** * * * *** * * * ***** * * ********* *
consensus_8107#0 CTTGACGTTCAGACATAAAATCATCCTCTAACAAACGTTGTGATGTGCATACAATCTCCG 952
consensus_8107#1 CTTGAA------------------------------------------------------ 773
*****
consensus_8107#0 GTAGAACAATAGATGACTGGTTAGAAATTTGTATGTCAACCTGTATAGGATTTGAGCAGA 1012
consensus_8107#1 ------------------------------------------------------------
consensus_8107#0 GCACAACAGGGTCAGAATAAACAGGTGAATCACAAGCTTCGACTAACAACTGTTCTTTCC 1072
consensus_8107#1 ------------------------------------------------------------
consensus_8107#0 TGCCATCAGCAATAGACGGAGATAATGGTTCATTCAGTATAAGTAAACCAGTAGTTGAAT 1132
consensus_8107#1 ------------------------------------------------------------
consensus_8107#0 CGATTGAAAATCGTTTAGATTCCCCCCCCTCATTGGATGTTGAACTGAATATTAAATAGA 1192
consensus_8107#1 ------------------------------------------------------------
consensus_8107#0 CAATTTGAGCATTCTCTCCAATGTCGAAATCATAGGCTTTCAACTGTAACGGTAAAGTCA 1252
consensus_8107#1 ------------------------------------------------------------
consensus_8107#0 TTGGAAAAAC 1262
consensus_8107#1 ----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||