These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_811#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 839 fasta sequence [GAGCCATATTCGGCCGAGGGGTGGTGGAGCATCGTTAGATGTGATCCCATGGTAGATGAGCGATAATAGGTTCATACACCATTTTTCCCTAGGATCCTTGCACTCATGTGCACCATTGTTTTGGAATCCGAATATTTCAATTCACCTAGGTGGATCCTCTGTACTCACATTTTTGTAGCAAACAACTGGTGTCTGGCCTCTCTAGGGCCTAAGTTCTCCGACCCATCTTTTTTACAAAAAAGGCAGTATCACTAAAGTTGGCAATTTTTTAAATGCTAATTTAGTAGTGGTTTTCGTTTTGGGAGATTTCGACATCCATATTAAAGTGAGGGAAACCTTATCTGTGGTATTTGAATCAAAATAGTTTTTTTTCAGAATTTAGCAATGTCTTTTTTGAATTTGATCGTTAGACTCGTCTTCCTCCAGAGGTAAATAGGATCTTGTTGGTGAAAAACCTGCCCTATAACATATCAGCGGAAGAAATGTATGATATTTTCGGCAAGTACGGTGCTATCCGTCAAATTCGCATCGGCAACACTCCTGAAACGAAAGGAACTGCTCTAGTTATCTATGAAGATATTTTCGACGCTAAGAACGCTTGTGATCACCTCAGTGGCTTTAACGTTTGTAACCGATATCTCGTAGTTCTGTACTACCAGAGAAACAAGGTATTCTGTATTGTTTTATTGTGTCGTTATCATGCTTTATATTAATTTGCATATTTCCATATGATGACGTCAGCGAAAATTATTTGTCTATTAAATTTATACAGCCATAAAACATTAGTAATATGGTAGCCTCCATACTGTCTAAGAATGTAAATGCAACACCTANTAAGC] [+] EMBL CD081571 [GAGCCATATTCGGCCGAGGGGTGGTGGAGCATCGTTAGATGTGATCCCATGGTAGATGAGCGATAATAGGTTCATACACCATTTTTCCCTAGGATCCTTGCACTCATGTGCACCATTGTTTTGGAATCCGAATATTTCAATTCACCTAGGTGGATCCTCTGTACTCACATTTTTGTAGCAAACAACTGGTGTCTGGCCTCTCTAGGGCCTAAGTTCTCCGACCCATCTTTTTTACAAAAAAGGCAGTATCACTAAAGTTGGCAATTTTTTAAATGCTAATTTAGTAGTGGTTTTCGTTTTGGGAGATTTCGACATCCATATTAAAGTGAGGGAAACCTTATCTGTGGTATTTGAATCAAAATAGTTTTTTTTCAGAATTTAGCAATGTCTTTTTTGAATTTGATCGTTAGACTCGTCTTCCTCCAGAGGTAAATAGGATCTTGTTGGTGAAAAACCTGCCCTATAACATATCAGCGGAAGAAATGTATGATATTTTCGGCAAGTACGGTGCTATCCGTCAAATTCGCATCGGCAACACTCCTGAAACGAAAGGAACTGCTCTAGTTATCTATGAAGATATTTTCGACGCTAAGAACGCTTGTGATCACCTCAGTGGCTTTAACGTTTGTAACCGATATCTCGTAGTTCTGTACTACCAGAGAAACAAGGTATTCTGTATTGTTTTATTGTGTCGTTATCATGCTTTATATTAATTTGCATATTTCCATATGATGACGTCAGCGAAAATTATTTGTCTATTAAATTTATACAGCCATAAAACATTAGTAATATGGTAGCCTCCATACTGTCTAAGAATGTAAATGCAACACCTANTAAGC] consensusID : consensus_811#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [CATTTTATTGATTATTTTGCCAAAATTATAAGTTTTATTTCCACAAGGATTTAAGAATGTCTGGTGTGAAAAACCGCGAAGAAGCCTCGGATTCGTTGTGAAATGAATCATTTCATTTTCGGAGTATTTAATCCATATTTTGCCTTCAACCGATCTAATTCTTCTTTCTTTTTATCTACATCAGTTTTCTTGAATTGCTGCAAAAGGAAGGAAAAGCCATTAAGAACAACCTAAAAATATTATGCACATACGTATAGTTAGGGTTAAAAAGAACCTGATATTTATACACGAACTCAGAGACCACAGGTTTTGATTGAAACAGTCGAGGCCAACCTAGTTAACAAGCATAGATTCGTTTACTATGTCAAACACATCAACCACGTGAAACTTGTTAAATAGGTCGGAGTAATATAAGCATCAAAAAGCCGTCTAGCTCGTTCGATATTTTTGTCTTAACTATATGGTGCTTATACCTGACAGAAAATCCGGCATGCCCCTATACTTATTATCAAAAAGGTCTGAACTAAAGGATGTTTTAACATTGACTGCTTTATAGGTGTTGCATTTACATTCTTAGACA] [+] EMBL CD075397 [CATTTTATTGATTATTTTGCCAAAATTATAAGTTTTATTTCCACAAGGATTTAAGAATGTCTGGTGTGAAAAACCGCGAAGAAGCCTCGGATTCGTTGTGAAATGAATCATTTCATTTTCGGAGTATTTAATCCATATTTTGCCTTCAACCGATCTAATTCTTCTTTCTTTTTATCTACATCAGTTTTCTTGAATTGCTGCAAAAGGAAGGAAAAGCCATTAAGAACAACCTAAAAATATTATGCACATACGTATAGTTAGGGTTAAAAAGAACCTGATATTTATACACGAACTCAGAGACCACAGGTTTTGATTGAAACAGTCGAGGCCAACCTAGTTAACAAGCATAGATTCGTTTACTATGTCAAACACATCAACCACGTGAAACTTGTTAAATAGGTCGGAGTAATATAAGCATCAAAAAGCCGTCTAGCTCGTTCGATATTTTTGTCTTAACTATATGGTGCTTATACCTGACAGAAAATCCGGCATGCCCCTATACTTATTATCAAAAAGGTCTGAACTAAAGGATGTTTTAACATTGACTGCTTTATAGGTGTTGCATTTACATTCTTAGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_811#0 GAGCCATATTCGGCCGAGGGGTGGTGGAGCATCGTTAGATGTGATCCCATGGTAGATGAG 60 consensus_811#1 ------------------------------------------------------------ consensus_811#0 CGATAATAGGTTCATACACCATTTTTCCCTAGGATCCTTGCACTCATGTGCACCATTGTT 120 consensus_811#1 ------------------------------------------------------------ consensus_811#0 TTGGAATCCGAATATTTCAATTCACCTAGGTGGATCCTCTGTACTCACATTTTTGTAGCA 180 consensus_811#1 ------------------------------------------------------------ consensus_811#0 AACAACTGGTGTCTGGCCTCTCTAGGGCCTAAGTTCTCCGACCCATCTTTTTTACAAAAA 240 consensus_811#1 ----------------------------------CATTTTATTGATTATTTTGCCAAAAT 26 * * ** **** ***** consensus_811#0 AGGCAGTATCACTAAAGTTGGCAATTTTTTAAATGCTAATTTAGTAGTGGTTTTCGTTTT 300 consensus_811#1 TATAAGTTTTATT----TCCACAAGGATTTAAGAAT--GTCTGGTGTGAAAAACCGCG-- 78 *** * * * * *** ***** * * ** ** consensus_811#0 GGGAGATTTCGACATCCATATTAAAGTGAGGGAAACCTTATCTGTGGTATTTGAATCAAA 360 consensus_811#1 AAGAAGCCTCGG-ATTCGTTGTGAAATGAATCATTTCATTTTCGGAGTATTTAATCCATA 137 ** *** ** * * * ** *** * * * * * ****** * ** * consensus_811#0 ATAGTTTTTTTTCAGAATTTAGCAATGTCTTTTTTGAATTTGATCGTTAGACTCGTCTTC 420 consensus_811#1 TTTTGCCTTCAACCGATCTAATTCTTCTTTCTTTTTATCTACATCAGTTTTCTTGAATTG 197 * ** * ** * * * * * **** * * *** * ** * ** consensus_811#0 CTCCAGAGGTAAATAGGATCTTGTTGGTGAAAAACCTGCCCTATAACATATCAGCGGAAG 480 consensus_811#1 CTGCAAAAGGAAGGAAAAGCC-ATTAA-GAACAACCTA------AAAATATTATGCACAT 249 ** ** * * ** * * * ** *** ***** ** **** * * consensus_811#0 AAATGTA-TGATATTTTCGGCAAGTACGGTGCT-ATCCGTCAAATTCGCATCGGCAACAC 538 consensus_811#1 ACGTATAGTTAGGGTTAAAAAGAACCTGATATTTATACACGAACTCAGAGACCACAGGTT 309 * * ** * * ** * * * * ** * ** * * * ** consensus_811#0 TC--CTGAAACGAAAGGAACTGCTCTAGTTATCTATGAAGATATTTTCGACGCTAAGAAC 596 consensus_811#1 TTGATTGAAACAGTCGAGGCCAACCTAGTTA---ACAAGCATAGATTCG---TTTACTAT 363 * ****** * * ******* * * *** **** * * * consensus_811#0 GCTTGTGATCACCTCAGTGGCTTTAACGTTTGTAACCGATATCTCGTAGTTCTGTAC-TA 655 consensus_811#1 GTC---AAACACATCAACCACGTGAAACTTGTTAA---ATAGGTCGGAGTAATATAAGCA 417 * * *** *** * * ** ** *** *** *** *** * ** * consensus_811#0 CCAGAGAAAC----AAGGTATTCTGTATTGTTTT----ATTGTGTCGTTATCATGCTTTA 707 consensus_811#1 TCAAAAAGCCGTCTAGCTCGTTCGATATTTTTGTCTTAACTATATGGTGCTTATACCTGA 477 ** * * * * *** **** ** * * * * * ** * ** * * * consensus_811#0 TATTAATTTGCATATTTCCATATGATGACGTCAGCGAAAATTATTTGTCTATTAAATTTA 767 consensus_811#1 CAGAAAATCCGGCATGCCCCTATACTTA--TTATCAAAAAGGTCTGAACTA--AAGGATG 533 * ** * ** ** *** * * * * * **** * *** ** * consensus_811#0 TACAGCCATAAAACATTAGTAATATG-GTAGCCTCCATACTGTCTAAGAATGTAAATGCA 826 consensus_811#1 TTTTAACATTGACTGCT--TTATAGGTGTTGCATTTACATTCTTAGACA----------- 580 * *** * * * *** * ** ** * * * * * * * consensus_811#0 ACACCTANTAAGC 839 consensus_811#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||