These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8113#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1063 fasta sequence [ATTCGGCACGAGGCGTGTACGTNATTTGAATANTCTCAAGGGATTCCAACTCTTAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACACCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACTTCTCCTTCTAGATG-CTCTCTTATTGCTGGTCCTTAC-TTGTTTCATTATCTGCTAGATCGTGGTGTTTGCTACATTATTCTTACAGACTCACAGTTCAGTCGTACAAAAGCCTTTGCATTTTTAGAGGCCATACAAACAGAATTTTACGGCAAATACTACCAACAAATACAAACAGTTTCAAGACCTTACGCATTTCTTGATTTTGATCACATTATACACAAAACTCAAAAAATCTATAGTGATAGTCGGTCATCCAATCTTAGTCAATTAAATGTAGCATTACAAGACGTACAAAGAATCATGGTACAGAATATTGATGATGTATTGCAACGTGGTGAAGCACTTTCAATTATTTAAGGTTATTCACCTACATCGTATGGTAACTGGACAGATTACTATTCAACGTAGATACATAACATGTAAATAAAAACCTTGGACTCTCGAGCATCTAACTTGTCTACAATGTCCAAGAAATACCGTCAAGATGCCCACTCACTCAACCTTCAATCGGCCTACGTCAAATACATACTTTTTTGCATCTTGATATTAGTAGTTNTCACATACTTTTATATTAGGTTTCTATGATGTAATTAGGCTANTATTCTATCCCAGTATGATTAACTTGTATAAATCCATATACTAATGGGGGAGTTGTGATGCTATTATCAATTNCTTTCTTTATTTATTNTC-AGTAAATNCTCATTTAGTAATCTGGTTTTTTTTCAAAAATTAAT] [+] EMBL CD081589 [ATTCGGCACGAGGCGTGTACGTNATTTGAATANTCTCAAGGGATTCCAACTCTTAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACACCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACTTCTCCTTCTAGATG CTCTCTTATTGCTGGTCCTTAC TTGTTTCATTATCTGCTAGATCGTGGTGTTTGCTACATTATTCTTACAGACTCACAGTTCAGTCGTACAAAAGCCTTTGCATTTTTAGAGGCCATACAAACAGAATTTTACGGCAAATACTACCAACAAATACAAACAGTTTCAAGACCTTACGCATTTCTTGATTTTGATCACATTATACACAAAACTCAAAAAATCTATAGTGATAGTCGGTCATCCAATCTTAGTCAATTAAATGTAGCATTACAAGACGTACAAAGAATCATGGTACAGAATATTGATGATGTATTGCAACGTGGTGAAGCACTTTCAATTATTTAAGGTTATTCACCTACATCGTATGGTAACTGGACAGATTACTATTCAACGTAGATACATAACATGTAAATAAAAACCTTGGACTCTCGAGCATCTAACTTGTCTACAATGTCCAAGAAATACCGTCAAGATGCCCACTCACTCAACCTTCAATCGGCCTACGTCAAATACATACTTTTTTGCATCTTGATATTAGTAGTTNTCACATACTTTTATATTAGGTTTCTATGATGTAATTAGGCTANTATTCTATCCCAGTATGATTAACTTGTATAAATCCATATACTAATGGGGGAGTTGTGATGCTATTATCAATTNCTTTCTTTATTTATTNTC AGTAAATNCTCATTTAGTAATCTGGTTTTTTTTCAA ] [+] EMBL CD084390 [ GCGTGTACGT ATTTGAATA TCTCAA GGATTCCAACTCTTAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACACCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACTTCTCCTTCTAGATG CTCTCTTATTGCTGGTCCTTAC TTGTTTCATTATCTGCTAGATCGTGGTGTTTGCTACATTATTCTTACAGACTCACAGTTCAGTCGTACAAAAGCCTTTGCATTTTTAGAGGCCATACAAACAGAATTTTACGGCAAATACTACCAACAAATACAAACAGTTTCAAGACCTTACGCATTTCTTG ] [+] EMBL AA756927 [ nCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGAAAGTCGTATGACTCNTACTTCTCCTTCTAGATGTCTCTC CATTGCTGGTCCTTACGGTG GGCATTATCTGCTAGATCGTGGTGTTTGCTACATTATTCTTACAGACTCACAGTTCAGTCGTACAAAAGCCTTTGCATTTTTAGAGGCCATACAAACAGAATTTTACGGCAAATACTACCAACAAATACAAACAGTTTCAAGACCTTACGCATTTCTTGATTTTGATCACATTATACACAAAACTCAAAAAATCTATAGTGATAG ] [-] EMBL CD075413 [ TTATACACAAAACTCAAAAAATCTATAGTGATAGTCGGTCATCCAATCTTAGTCAATTAAATGTAGCATTACAAGACGTACAAAGAATCATGGTACAGAATATTGATGATGTATTGCAACGTGGTGAAGCACTTTCAATTATTTAAGGTTATTCACCTACATCGTATGGTAACTGGACAGATTACTATTCAACGTAGATACATAACATGTAAATAAAACCCTTGGACTCTCGAGCATCTAACTTGTCTACAATGTCCAAGAAATACCGTCAAGATGCCCACTCACTCAACCTTCAATCGGCCTACGTCAAATACATACTTTTTTGCATCTTGATATTAGTAGTTTTCACATACTTTTATATTAGGTTTCTATGATGTAATTAGGCTATAATTCTATCCCAGTATGATTAACTTGTATAAATCCATATACTAAT GGGGAGTTGTGATGCTATTATCAATTTCTTTCTTTATTTATT TCAAGTAAATTCTCATTTAGTAATCTGTTTTTTTTTCAAAAATTAAT] consensusID : consensus_8113#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 328 fasta sequence [TACTAAATGATCCACGTGTACGTATTTGAATATCTCAAGGATTCCAACTCTTAAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACGCCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACT] [-] EMBL CD178800 [TACTAAATGATCCACGTGTACGTATTTGAATATCTCAAGGATTCCAACTCTTAAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACGCCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACT] [-] EMBL CD178899 [TACTAAATGATCCACGTGTACGTATTTGAATATCTCAAGGATTCCAACTCTTAAAAAAAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAGGAGTTATCGAAGCAAGACTTCTGACGCCCCCATAACCTGTTCTTGCACAACTTCACCAGTCAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGCAGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGCAAAAGCACTCGTTTGTCGTATGACTCCTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8113#0 -ATTCGGCACGAGGCGTGTACGTNATTTGAATANTCTCAAGGGATTCCAACTCTTAAAAA 59 consensus_8113#1 TACTAAATGATCCACGTGTACGTA-TTTGAATAT-CTCAAGG-ATTCCAACTCTTAAAAA 57 * * ********* ******** ******* ***************** consensus_8113#0 A-GGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAG 118 consensus_8113#1 AAGGATATTTACCTGTGTTATACCCAAAATCAGTCGGTATTTCATCCCTGTCGTTTTAAG 117 * ********************************************************** consensus_8113#0 GAGTTATCGAAGCAAGACTTCTGACACCCCCATAACCTGTTCTTGCACAACTTCACCAGT 178 consensus_8113#1 GAGTTATCGAAGCAAGACTTCTGACGCCCCCATAACCTGTTCTTGCACAACTTCACCAGT 177 ************************* ********************************** consensus_8113#0 CAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGC 238 consensus_8113#1 CAGATTTCTCATGATATACCTTACTCTAATTGCTAGGGTAGCCGATGGGCTCCCACTTGC 237 ************************************************************ consensus_8113#0 AGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGC 298 consensus_8113#1 AGCAACTATTCAAGATGACGAACAGCTAAATCGTGAAATATTCCAGTATCAAAATCAAGC 297 ************************************************************ consensus_8113#0 AAAAGCACTCGTTTGTCGTATGACTCCTACTTCTCCTTCTAGATGCTCTCTTATTGCTGG 358 consensus_8113#1 AAAAGCACTCGTTTGTCGTATGACTCCTACT----------------------------- 328 ******************************* consensus_8113#0 TCCTTACTTGTTTCATTATCTGCTAGATCGTGGTGTTTGCTACATTATTCTTACAGACTC 418 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 ACAGTTCAGTCGTACAAAAGCCTTTGCATTTTTAGAGGCCATACAAACAGAATTTTACGG 478 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 CAAATACTACCAACAAATACAAACAGTTTCAAGACCTTACGCATTTCTTGATTTTGATCA 538 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 CATTATACACAAAACTCAAAAAATCTATAGTGATAGTCGGTCATCCAATCTTAGTCAATT 598 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 AAATGTAGCATTACAAGACGTACAAAGAATCATGGTACAGAATATTGATGATGTATTGCA 658 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 ACGTGGTGAAGCACTTTCAATTATTTAAGGTTATTCACCTACATCGTATGGTAACTGGAC 718 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 AGATTACTATTCAACGTAGATACATAACATGTAAATAAAAACCTTGGACTCTCGAGCATC 778 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 TAACTTGTCTACAATGTCCAAGAAATACCGTCAAGATGCCCACTCACTCAACCTTCAATC 838 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 GGCCTACGTCAAATACATACTTTTTTGCATCTTGATATTAGTAGTTNTCACATACTTTTA 898 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 TATTAGGTTTCTATGATGTAATTAGGCTANTATTCTATCCCAGTATGATTAACTTGTATA 958 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 AATCCATATACTAATGGGGGAGTTGTGATGCTATTATCAATTNCTTTCTTTATTTATTNT 1018 consensus_8113#1 ------------------------------------------------------------ consensus_8113#0 CAGTAAATNCTCATTTAGTAATCTGGTTTTTTTTCAAAAATTAAT 1063 consensus_8113#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||