These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [CAAAAACTGTTTGGCAATCTTCTGTCTCATACAGCTTGTTGTATTTTCAAAATGTGATGGTTGGACAATCACATGCAACGAAACATATTGTTGTGAAAACACCAATGATGGGAAACTTTGTTGTGATGGGGAGTATTGTTCTGCTTCAATAAGTAATCATCAAGATTTGACTAAACGTTACCAACAGAACCTTTTGATGACTCAACAGATAAAACAGTTTGCAAGAAGTTTAAAATAATATAACGTTCAAAAAGATAAGTGATCTGAACGAACTACGATTATTGATAATGCAAACTGGACGGTCGCTAAATTACCCCGGAATTCCTAAAATTCCTGGGACA] [+] EMBL AW497769 [CAAAAACTGTTTGGCAATCTTCTGTCTCATACAGCTTGTTGTATTTTCAAAATGTGATGGTTGGACAATCACATGCAACGAAACATATTGTTGTGAAAACACCAATGATGGGAAACTTTGTTGTGATGGGGAGTATTGTTCTGCTTCAATAAGTAATCATCAAGATTTGACTAAACGTTACCAACAGAACCTTTTGATGACTCAACAGATAAAACAGTTTGCAAGAAGTTTAAAATAATATAACGTTCAAAAAGATAAGTGATCTGAACGAACTACGATTATTGATAATGCAAACTGGACGGTCGCTAAATTACCCCGGAATTCCTAAAATTCCTGGGACA] consensusID : consensus_8115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 231 fasta sequence [TTCGGCGATTTGTAACCAACAGAACCTTTTGATGACTCAACAGATAAAAACAGTTTGCAAGAAGTTTAAAATAATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATTGATAAATGCAAAACTGAACGATCG-CTAAATTATCCCTGTAATTTCTTAAAATT-CATTGGACAAAAAAATATTGCTTGTGGATGCTTTAATTTTACAATAATAAAACTATAT] [+] EMBL AW146475 [TTCGGCGATTTGTAACCAACAGAACCTTTTGATGACTCAACAGATAAAAACAGTTTGCAAGAAGTTTAAAATAATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATTGATAAATGCAAAACTGAACGATCG CTAAATTATCCCTGTAATTTCTTAAAATT CATTGGACAAAAAAATATTGCTTGTGGATGCTTTAATTTTACAATAATAAAAC ] [-] EMBL AI740431 [ GTTTAAAATAATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATTGATAAATGCAAAACTGAACGATCG CTAAATTATCCCTGTAATTTCTTAAAATT CATTGGACAAAAAAATATTGCTTGTGGATGCTTTAATTTTACAATAATAAAACT ] [-] EMBL AI740402 [ AATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATTGATAAATGCAAAACTGAACGATCG CTAAATTATCCCTGTAATTTCTTAAAATT CATTGGACAAAAAAATATTGCTTGTGGATGCTTTAATTTTACAATAATAAAACT ] [-] EMBL AI026207 [ ACGAACTACGATTATTGATAAATGCAAAACTGAACGATCGACTAAATTATCCCTGTAATTTCTTAAAATTACATTGGACAAAAAAATATTGCTTGTGGATGCTTTAATTTTACAATAATAAAACTATAT] consensusID : consensus_8115#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence [ACTGATTGTTTACGAAAAACATTTCATGACTTACTAATGACTAATTAAATTCACTTTTTTCGTTATTTTTCATTGAAGTAATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATTGATAATGCAAAACTGAACGATCGCTAATTATCCCTGTATTTCTTAAAATTCATTGGACAAAAATTTGGCTTGTGGATGCTTAATTTACCATAATAAACTA] [+] EMBL AI764931 [ACTGATTGTTTACGAAAAACATTTCATGACTTACTAATGACTAATTAAATTCACTTTTTTCGTTATTTTTCATTGAAGTAATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATTGATAATGCAAAACTGAACGATCGCTAATTATCCCTGTATTTCTTAAAATTCATTGGACAAAAATTTGGCTTGTGGATGCTTAATTTACCATAATAAACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8115#0 CAAAAACTGTTTGGCAATCTTCTGTCTCATACAGCTTGTTGTATTTTCAAAATGTGATGG 60 consensus_8115#1 ------------------------------------------------------------ consensus_8115#2 ------------------------------------------------------------ consensus_8115#0 TTGGACAATCACATGCAACGAAACATATTGTTGTGAAAACACCAATGATGGGAAACTTTG 120 consensus_8115#1 ------------------------------------------------------------ consensus_8115#2 ------------------------------------------------------------ consensus_8115#0 TTGTGATGGGGAGTATTGTTCTGCTTCAATAAGTAATCATCAAGATTTGACTAAACGTTA 180 consensus_8115#1 ---------------------------------------------TTCGGCGATTTGTAA 15 consensus_8115#2 --------------------------------------ACTGATTGTTTACGAAAAACAT 22 * * * consensus_8115#0 CCAACAGAACCTTTTGATGACTCAACAGATAAAA-CAGTTTGCAAGAAGT--TTAAAATA 237 consensus_8115#1 CCAACAGAACCTTTTGATGACTCAACAGATAAAAACAGTTTGCAAGAAGT--TTAAAATA 73 consensus_8115#2 TT--CATGACTTACTAATGACTAATTAAATTCACTTTTTTCGTTATTTTTCATTGAAGTA 80 ** ** * * ****** * * ** * ** * * * ** ** ** consensus_8115#0 ATATAACGTTCAAAAAGATAAGT-GATCTGAACGAACTACGATTATTGATAA-TGCAAA- 294 consensus_8115#1 ATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATTGATAAATGCAAAA 133 consensus_8115#2 ATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATTGATAA-TGCAAAA 139 *********************** **************************** ****** consensus_8115#0 CTGGACGGTCGCTAAATTACCCCGGAA--TTCCTAAAATTCCTGGGACA----------- 341 consensus_8115#1 CTGAACGATCGCTAAATTATCCCTGTAATTTCTTAAAATTCATTGGACAAAAAAATATTG 193 consensus_8115#2 CTGAACGATCGCTAA-TTATCCCTGTA-TTTCTTAAAATTCATTGGACAAAA--ATTTGG 195 *** *** ******* *** *** * * *** ******** * ***** consensus_8115#0 -------------------------------------- consensus_8115#1 CTTGTGGATGCTTTAATTTTACAATAATAAAACTATAT 231 consensus_8115#2 CTTGTGGATGCTTAATTTACCATAATAAACTA------ 227 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||