cluster # 8118

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Schistosoma mansoni
cluster # 8118 cluster # 8118 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8118#0 length = 517 sequences # 4

consensus_8118#1 length = 327 sequences # 2

consensusID : consensus_8118#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 517
fasta sequence

                              [CTACGTAACGTATTCGAAATCTTACTTTATTAGCTTATAGTTTCTAGGATCAAATTGTTTCAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTTAAATGTCTTATCTTGAATCTTTTTCAACCTGTACAAAGGTGAAAAGATGTTCCCAGTCAGTCTGCTCAGAAACATTCGAAAAAGATCTGAAATATCCCCGGCTGTTGGATAATTCAAGAAATAATATAATCCATACTCTATCATTATACGATGTTGATTACAGTTCAACAAATCGTTTCAACGAATTTGAAAATATTAACCATTCTTTATGTAGTCC]

[+] EMBL CD189242             [CTACGTAACGTATTCGAAATCTTACTTTATTAGCTTATAGTTTCTAGGATCAAATTGTTTCAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCTTCGTAA                                                                                                                                                                                                                                                                ]
[-] EMBL CD189466             [ TACGTAACGTATTCGAAATCTTACTTTATTAGCTTATAGTTTCTAGGATCAAATTGTTTCAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCTTCGTAAA                                                                                                                                                                                                                                                               ]
[-] EMBL CD183232             [          TATTCGAAATCTTACTTTATTAGCTTATAGTTTCTAGGATCAAATTGTTTCAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTTAAATGTCTTATCTTGAATCTTTTTCAACCTGTACAAAGGTGAA                                                                                                                                                                              ]
[+] EMBL CD152103             [                                                                      CTTGAC TAGGTA TTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTTAAATGTCTTATCTTGAATCTTTTTCAACCTGTACAAAGGTGAAAAGATGTTCCCAGTCAGTCTGCTCAGAAACATTCGAAAAAGATCTGAAATATCCCCGGCTGTTGGATAATTCAAGAAATAATATAATCCATACTCTATCATTATACGATGTTGATTACAGTTCAACAAATCGTTTCAACGAATTTGAAAATATTAACCATTCTTTATGTAGTCC]




>consensus_8118#0
CTACGTAACGTATTCGAAATCTTACTTTATTAGCTTATAGTTTCTAGGATCAAATTGTTT
CAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAA
ATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCT
CGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAG
TAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTT
AAATGTCTTATCTTGAATCTTTTTCAACCTGTACAAAGGTGAAAAGATGTTCCCAGTCAG
TCTGCTCAGAAACATTCGAAAAAGATCTGAAATATCCCCGGCTGTTGGATAATTCAAGAA
ATAATATAATCCATACTCTATCATTATACGATGTTGATTACAGTTCAACAAATCGTTTCA
ACGAATTTGAAAATATTAACCATTCTTTATGTAGTCC

consensusID : consensus_8118#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 327
fasta sequence

                              [GCGGTGGATTTGGACAGGGGACTACTTTCTAGGATCAAATTGTTTCAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTTAAATGTCTTATCTTGAATCTTCTTCAACCTGTACAAAGGTGA]

[-] EMBL CD185778             [GCGGTGGATTTGGACAGGGGACTACTTTCTAGGATCAAATTGTTTCAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTTAAATGTCTTATCTTGAATCTTCTTCAACCTGTACAAAGGTGA]
[-] EMBL CD186050             [             ACAGGGGACTACTTTCTAGGATCAAATTGTTTCAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTTAAATGTCTTATCTTGAATCTTTTTCAACCTGTACAAAGGTGA]




>consensus_8118#1
GCGGTGGATTTGGACAGGGGACTACTTTCTAGGATCAAATTGTTTCAATTCTCTGCTTGA
CATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAAATTTCAAGAGCTTTC
CCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCTCGCCTACACTTCCCT
AGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAGTAGTATGAGATTTCT
TCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTTAAATGTCTTATCTTG
AATCTTCTTCAACCTGTACAAAGGTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8118#0      CTACGTAACGTATTCGAAATCTTACTTTATTAGCTTATAGTTTCTAGGATCAAATTGTTT 60
consensus_8118#1      ---------------GCGGTGGATTTGGACAGGGGACTACTTTCTAGGATCAAATTGTTT 45
                                     *   *     *  *   *    ** ********************

consensus_8118#0      CAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAA 120
consensus_8118#1      CAATTCTCTGCTTGACATTGGTATTTGTATTCGATCGTTCTAACTGCTAAGTGCAAGTAA 105
                      ************************************************************

consensus_8118#0      ATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCT 180
consensus_8118#1      ATTTCAAGAGCTTTCCCAGTCTTGGACTCGCTTTTCCCCATGTTTTTTTCTAGCTTTTCT 165
                      ************************************************************

consensus_8118#0      CGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAG 240
consensus_8118#1      CGCCTACACTTCCCTAGTACTCAACGTTCCTTCAGGCTAGATGCGAGCCATTACACTCAG 225
                      ************************************************************

consensus_8118#0      TAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTT 300
consensus_8118#1      TAGTATGAGATTTCTTCGTAAAGATAATTAGCCAGTCAATATCATCTGGGAAGTATTCTT 285
                      ************************************************************

consensus_8118#0      AAATGTCTTATCTTGAATCTTTTTCAACCTGTACAAAGGTGAAAAGATGTTCCCAGTCAG 360
consensus_8118#1      AAATGTCTTATCTTGAATCTTCTTCAACCTGTACAAAGGTGA------------------ 327
                      ********************* ********************                  

consensus_8118#0      TCTGCTCAGAAACATTCGAAAAAGATCTGAAATATCCCCGGCTGTTGGATAATTCAAGAA 420
consensus_8118#1      ------------------------------------------------------------
                                                                                  

consensus_8118#0      ATAATATAATCCATACTCTATCATTATACGATGTTGATTACAGTTCAACAAATCGTTTCA 480
consensus_8118#1      ------------------------------------------------------------
                                                                                  

consensus_8118#0      ACGAATTTGAAAATATTAACCATTCTTTATGTAGTCC 517
consensus_8118#1      -------------------------------------