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Schistosoma mansoni
cluster # 8125 cluster # 8125       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8125#0 length = 964 sequences # 5  
consensus_8125#1 length = 255 sequences # 1  

consensusID : consensus_8125#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 964
fasta sequence
                              [ACCAAGACGTAATGTCGGTTTCGATGCACACCCCATCAAATTATTATTATTGGCCTTCGGGGACTACTCCTGGGCCTAACACCACGCCATACAACTACAGTGATGTCTCGTCACATACATATGCAACCCCTACACCTGTATCCAAACCAAACAATGCAGCTGGTTATCTTAACCCTAATAAAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGGAGCTCAGCAGTTAAAGAATACGACATCTAATTCAAATGGTAGGCCGTTATGGAAAGATCGACCACATGTT-GGGAAATATAGTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGACAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCACTCAAGTCTACAGAAGCTTTTTCGTGAAGTTCGTGTTCTAAAAAGCTTGAATCATCCGAATATAATCAAATTGTTGGAGGTTATTG-AATCTGAAAAACATTTATACTTGGTCATGGAATATGCCAGTGGAGGTGAAGTATTTGA-TTATCTTGTTTCACATGGTAAAATGAATGAAAAAGATGCACGATGTAAATTTCGTCAAATTGTTTCCGCTGTACAATATTGTCATCAAAAAATGATTGTTCATCGAGACTTGAAAGCTGAAAATTTATTACTTGATGCTGAATTGAATATAAAAATAGCAGATTTTGGATTTTCAAATTATTTTTCTAATTCACAAAAATTGGATACATTTTGTGGTAGTCCACCCTATGCTGCACCGGAATTGTTTTTAGGACGTAAATATGAAGGTCCTGAAGTTGATGTTTGGTCATTANGTGTAATTCTATATACATTAGTTAGTGGTACATTGCCATTTGATGGAAAAAATCTAAAAGAATTGCGTGAACGTGTATTACGCGGTACCTATCGAGGGCCTTATTATAGAGCGCA]

[-] EMBL CD186737             [ACCAAGACGTAATGTCGGTTTCGATGCACACCCCATCAAATTATTATTATTGGCCTTCGGGGACTACTCCTGGGCCTAACACCACGCCATACAACTACAGTGATGTCTCGTCACATACATATGCAACCCCTACACCTGTATCCAAACCAAACAATGCAGCTGGTTATCTTAACCCTAATAAAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGGAGCTCAGCAGTTAAAGAATACGACATCTAATTCAAATGGTAGGCCGTTATGGAAAGATCGACCACATGTT GGGAAATATAGTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGACAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD196160             [                                                                                                                                                                       CTTAACCCTAATAAAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGGAGCTCAGCAGTTAAAGAATACGACATCTAATTCAAATGGTAGGCCGTTATGGAAAGATCGACCACATGTT GGGAAATATAGTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGACAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCACTCAAGTCTACAGAAGCTTTTTCGTGAAGTTCGTGTTCTAAAAAGCTTGAATCATCCGAATATAATCAAATTGTTGGAGNGTATTGAAATCTG AAAACATTTATACTTGGTCATGGAATATGCCAGTGGAGGTGAAGTATTTGATTTATC TGTTTCACATcg                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD196234             [                                                                                                                                                                                                                           GAGCTCAGCAGTTAAAGAATACGACATCTAATTCAAATGGTAGGCCGTTATGGAAAGATCGACCACATGTTGGGGAAATATAGTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGACAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCACTCAAGTCTACAGAAGCTTTTTCGTGAAGTTCGTGTTCTAAAAAGCTTGAATCATCCGAATATAATCAAATTGTTGGAGGTTATTG AATCTGAAAAACATTTATACTTGGTCATGGAATATGCCAGTGGAGGTGAAGTATTTGA TTATCTTGTTTCACATGG                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD154123             [                                                                                                                                                                                                                                                                                     TCGACCACATGTT GGGAAATATAGTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGACAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCACTCAAGTCTACAGAAGCTTTTTCGTGAAGTTCGTGTTCTAAAAAGCTTGAATCATCCGAATATAATCAAATTGTTGGAGGTTATTG AATCTGAAAAACATTTATACTTGGTCATGGAATATGCCAGTGGAGGTGAAGTATTTGA TTATCTTGTTTCACATGGTAAAATGAATGAAAAAGATGCACGATGTAAATTTCGTCAAATTGTTTCCGCTGTACAATATTGTCATCAAAAAATGATTGTTCATCGAGACTTGAAAGCTGAAAATTTATTACTTGATGCTGAATTGAATATAAAAATAGCAGATTTTGGATTTTCAAATTATTTTTCTAATTCACAAAAATTGGATACATTTTGTGGTAGTCCACCCTATGCTGCACCGGAATTGTTTTTAGGACGTAAATATGAAGGTCCTGAAGTTGATGTTTGGTCATTANGTGTAATTCTATATACATTAGTTAGTGGTACATTGCCATTTG                                                                         ]
[-] EMBL CD115280             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTAAAATGAATGAAAAAGATGCACGATGTANATTTCGTCAAATTGTTTCCGCTGTACAATATTGTCATCAAAAAATGATTGTTCATTGAGACTTGANAGCTGAANATTTATTACTTGATGCTGAATTGAATATAAAAATAGCAGATTTTGGATTTTCAAATTATTTTTCTAATTCACAAAAATTGGATACATTTTGTGGTAGTCCACCCTATGCTGCACCGGAATTGTTTTTAGGACGTAAATATGAAGGTCCTGAAGTTGATGTTTGGTCATTAGGTGTAATTCTATATACATTAGTTAGTGGTACATTGCCATTTGATGGAAAAAATCTAAAAGAATTGCGTGAACGTGTATTACGCGGTACCTATCGAGGGCCTTATTATAGAGCGCA]


>consensus_8125#0 ACCAAGACGTAATGTCGGTTTCGATGCACACCCCATCAAATTATTATTATTGGCCTTCGG GGACTACTCCTGGGCCTAACACCACGCCATACAACTACAGTGATGTCTCGTCACATACAT ATGCAACCCCTACACCTGTATCCAAACCAAACAATGCAGCTGGTTATCTTAACCCTAATA AAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGGAGCTCAGCAGTTAAAGAATA CGACATCTAATTCAAATGGTAGGCCGTTATGGAAAGATCGACCACATGTTGGGAAATATA GTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGA CAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCACTCAAGTC TACAGAAGCTTTTTCGTGAAGTTCGTGTTCTAAAAAGCTTGAATCATCCGAATATAATCA AATTGTTGGAGGTTATTGAATCTGAAAAACATTTATACTTGGTCATGGAATATGCCAGTG GAGGTGAAGTATTTGATTATCTTGTTTCACATGGTAAAATGAATGAAAAAGATGCACGAT GTAAATTTCGTCAAATTGTTTCCGCTGTACAATATTGTCATCAAAAAATGATTGTTCATC GAGACTTGAAAGCTGAAAATTTATTACTTGATGCTGAATTGAATATAAAAATAGCAGATT TTGGATTTTCAAATTATTTTTCTAATTCACAAAAATTGGATACATTTTGTGGTAGTCCAC CCTATGCTGCACCGGAATTGTTTTTAGGACGTAAATATGAAGGTCCTGAAGTTGATGTTT GGTCATTANGTGTAATTCTATATACATTAGTTAGTGGTACATTGCCATTTGATGGAAAAA ATCTAAAAGAATTGCGTGAACGTGTATTACGCGGTACCTATCGAGGGCCTTATTATAGAG CGCA



consensusID : consensus_8125#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence
                              [TACAATTTTCATCAATCATGGAACGTTATCACAAACCAAACAATGCAGATGGTTATCTCAACCCTAATAAAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGTTTTTTATCAGTTAAAGAATACGACACCTAGGGCAAATGGCAGGCCGTTATGGAAAGATCGACCACATGTCGGGAAATATAGTTTAACCCAAACTATCGGCAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTCGACAACCG]

[+] EMBL CD115164             [TACAATTTTCATCAATCATGGAACGTTATCACAAACCAAACAATGCAGATGGTTATCTCAACCCTAATAAAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGTTTTTTATCAGTTAAAGAATACGACACCTAGGGCAAATGGCAGGCCGTTATGGAAAGATCGACCACATGTCGGGAAATATAGTTTAACCCAAACTATCGGCAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTCGACAACCG]


>consensus_8125#1 TACAATTTTCATCAATCATGGAACGTTATCACAAACCAAACAATGCAGATGGTTATCTCA ACCCTAATAAAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGTTTTTTATCAGT TAAAGAATACGACACCTAGGGCAAATGGCAGGCCGTTATGGAAAGATCGACCACATGTCG GGAAATATAGTTTAACCCAAACTATCGGCAAGGGGAACTTTGCAAAGGTCAAACTCGCCC AGCATTCGACAACCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8125#0      ACCAAGACGTAATGTCGGTTTCGATGCACACCCCATCAAATTATTATTATTGGCCTTCGG 60
consensus_8125#1      ------------------------------------------------------------
                                                                                  

consensus_8125#0      GGACTACTCCTGGGCCTAACACCACGCCATACAACTACAGTGATGTCTCGTCACATACAT 120
consensus_8125#1      ---------------------------------------------------TACAATTTT 9
                                                                          ***    *

consensus_8125#0      ATGCAACCCCTACACCTGTATCCAAACCAAACAATGCAGCTGGTTATCTTAACCCTAATA 180
consensus_8125#1      CATCAATCATGGAACGTTATCACAAACCAAACAATGCAGATGGTTATCTCAACCCTAATA 69
                         *** *     ** *     ***************** ********* **********

consensus_8125#0      AAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGGAGCTCAGCAGTTAAAGAATA 240
consensus_8125#1      AAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGTTTTTTATCAGTTAAAGAATA 129
                      ***************************************    * * *************

consensus_8125#0      CGACATCTAATTCAAATGGTAGGCCGTTATGGAAAGATCGACCACATGTTGGGAAATATA 300
consensus_8125#1      CGACACCTAGGGCAAATGGCAGGCCGTTATGGAAAGATCGACCACATGTCGGGAAATATA 189
                      ***** ***   ******* ***************************** **********

consensus_8125#0      GTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGA 360
consensus_8125#1      GTTTAACCCAAACTATCGGCAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTCGA 249
                      ****** ************ ************************************* **

consensus_8125#0      CAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCACTCAAGTC 420
consensus_8125#1      CAACCG------------------------------------------------------ 255
                      ******                                                      

consensus_8125#0      TACAGAAGCTTTTTCGTGAAGTTCGTGTTCTAAAAAGCTTGAATCATCCGAATATAATCA 480
consensus_8125#1      ------------------------------------------------------------
                                                                                  

consensus_8125#0      AATTGTTGGAGGTTATTGAATCTGAAAAACATTTATACTTGGTCATGGAATATGCCAGTG 540
consensus_8125#1      ------------------------------------------------------------
                                                                                  

consensus_8125#0      GAGGTGAAGTATTTGATTATCTTGTTTCACATGGTAAAATGAATGAAAAAGATGCACGAT 600
consensus_8125#1      ------------------------------------------------------------
                                                                                  

consensus_8125#0      GTAAATTTCGTCAAATTGTTTCCGCTGTACAATATTGTCATCAAAAAATGATTGTTCATC 660
consensus_8125#1      ------------------------------------------------------------
                                                                                  

consensus_8125#0      GAGACTTGAAAGCTGAAAATTTATTACTTGATGCTGAATTGAATATAAAAATAGCAGATT 720
consensus_8125#1      ------------------------------------------------------------
                                                                                  

consensus_8125#0      TTGGATTTTCAAATTATTTTTCTAATTCACAAAAATTGGATACATTTTGTGGTAGTCCAC 780
consensus_8125#1      ------------------------------------------------------------
                                                                                  

consensus_8125#0      CCTATGCTGCACCGGAATTGTTTTTAGGACGTAAATATGAAGGTCCTGAAGTTGATGTTT 840
consensus_8125#1      ------------------------------------------------------------
                                                                                  

consensus_8125#0      GGTCATTANGTGTAATTCTATATACATTAGTTAGTGGTACATTGCCATTTGATGGAAAAA 900
consensus_8125#1      ------------------------------------------------------------
                                                                                  

consensus_8125#0      ATCTAAAAGAATTGCGTGAACGTGTATTACGCGGTACCTATCGAGGGCCTTATTATAGAG 960
consensus_8125#1      ------------------------------------------------------------
                                                                                  

consensus_8125#0      CGCA 964
consensus_8125#1      ----
                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)