|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8125#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 964 fasta sequence
[ACCAAGACGTAATGTCGGTTTCGATGCACACCCCATCAAATTATTATTATTGGCCTTCGGGGACTACTCCTGGGCCTAACACCACGCCATACAACTACAGTGATGTCTCGTCACATACATATGCAACCCCTACACCTGTATCCAAACCAAACAATGCAGCTGGTTATCTTAACCCTAATAAAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGGAGCTCAGCAGTTAAAGAATACGACATCTAATTCAAATGGTAGGCCGTTATGGAAAGATCGACCACATGTT-GGGAAATATAGTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGACAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCACTCAAGTCTACAGAAGCTTTTTCGTGAAGTTCGTGTTCTAAAAAGCTTGAATCATCCGAATATAATCAAATTGTTGGAGGTTATTG-AATCTGAAAAACATTTATACTTGGTCATGGAATATGCCAGTGGAGGTGAAGTATTTGA-TTATCTTGTTTCACATGGTAAAATGAATGAAAAAGATGCACGATGTAAATTTCGTCAAATTGTTTCCGCTGTACAATATTGTCATCAAAAAATGATTGTTCATCGAGACTTGAAAGCTGAAAATTTATTACTTGATGCTGAATTGAATATAAAAATAGCAGATTTTGGATTTTCAAATTATTTTTCTAATTCACAAAAATTGGATACATTTTGTGGTAGTCCACCCTATGCTGCACCGGAATTGTTTTTAGGACGTAAATATGAAGGTCCTGAAGTTGATGTTTGGTCATTANGTGTAATTCTATATACATTAGTTAGTGGTACATTGCCATTTGATGGAAAAAATCTAAAAGAATTGCGTGAACGTGTATTACGCGGTACCTATCGAGGGCCTTATTATAGAGCGCA]
[-] EMBL CD186737 [ACCAAGACGTAATGTCGGTTTCGATGCACACCCCATCAAATTATTATTATTGGCCTTCGGGGACTACTCCTGGGCCTAACACCACGCCATACAACTACAGTGATGTCTCGTCACATACATATGCAACCCCTACACCTGTATCCAAACCAAACAATGCAGCTGGTTATCTTAACCCTAATAAAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGGAGCTCAGCAGTTAAAGAATACGACATCTAATTCAAATGGTAGGCCGTTATGGAAAGATCGACCACATGTT GGGAAATATAGTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGACAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCAC ]
[+] EMBL CD196160 [ CTTAACCCTAATAAAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGGAGCTCAGCAGTTAAAGAATACGACATCTAATTCAAATGGTAGGCCGTTATGGAAAGATCGACCACATGTT GGGAAATATAGTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGACAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCACTCAAGTCTACAGAAGCTTTTTCGTGAAGTTCGTGTTCTAAAAAGCTTGAATCATCCGAATATAATCAAATTGTTGGAGNGTATTGAAATCTG AAAACATTTATACTTGGTCATGGAATATGCCAGTGGAGGTGAAGTATTTGATTTATC TGTTTCACATcg ]
[-] EMBL CD196234 [ GAGCTCAGCAGTTAAAGAATACGACATCTAATTCAAATGGTAGGCCGTTATGGAAAGATCGACCACATGTTGGGGAAATATAGTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGACAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCACTCAAGTCTACAGAAGCTTTTTCGTGAAGTTCGTGTTCTAAAAAGCTTGAATCATCCGAATATAATCAAATTGTTGGAGGTTATTG AATCTGAAAAACATTTATACTTGGTCATGGAATATGCCAGTGGAGGTGAAGTATTTGA TTATCTTGTTTCACATGG ]
[+] EMBL CD154123 [ TCGACCACATGTT GGGAAATATAGTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGACAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCACTCAAGTCTACAGAAGCTTTTTCGTGAAGTTCGTGTTCTAAAAAGCTTGAATCATCCGAATATAATCAAATTGTTGGAGGTTATTG AATCTGAAAAACATTTATACTTGGTCATGGAATATGCCAGTGGAGGTGAAGTATTTGA TTATCTTGTTTCACATGGTAAAATGAATGAAAAAGATGCACGATGTAAATTTCGTCAAATTGTTTCCGCTGTACAATATTGTCATCAAAAAATGATTGTTCATCGAGACTTGAAAGCTGAAAATTTATTACTTGATGCTGAATTGAATATAAAAATAGCAGATTTTGGATTTTCAAATTATTTTTCTAATTCACAAAAATTGGATACATTTTGTGGTAGTCCACCCTATGCTGCACCGGAATTGTTTTTAGGACGTAAATATGAAGGTCCTGAAGTTGATGTTTGGTCATTANGTGTAATTCTATATACATTAGTTAGTGGTACATTGCCATTTG ]
[-] EMBL CD115280 [ GTAAAATGAATGAAAAAGATGCACGATGTANATTTCGTCAAATTGTTTCCGCTGTACAATATTGTCATCAAAAAATGATTGTTCATTGAGACTTGANAGCTGAANATTTATTACTTGATGCTGAATTGAATATAAAAATAGCAGATTTTGGATTTTCAAATTATTTTTCTAATTCACAAAAATTGGATACATTTTGTGGTAGTCCACCCTATGCTGCACCGGAATTGTTTTTAGGACGTAAATATGAAGGTCCTGAAGTTGATGTTTGGTCATTAGGTGTAATTCTATATACATTAGTTAGTGGTACATTGCCATTTGATGGAAAAAATCTAAAAGAATTGCGTGAACGTGTATTACGCGGTACCTATCGAGGGCCTTATTATAGAGCGCA]
consensusID : consensus_8125#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence
[TACAATTTTCATCAATCATGGAACGTTATCACAAACCAAACAATGCAGATGGTTATCTCAACCCTAATAAAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGTTTTTTATCAGTTAAAGAATACGACACCTAGGGCAAATGGCAGGCCGTTATGGAAAGATCGACCACATGTCGGGAAATATAGTTTAACCCAAACTATCGGCAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTCGACAACCG]
[+] EMBL CD115164 [TACAATTTTCATCAATCATGGAACGTTATCACAAACCAAACAATGCAGATGGTTATCTCAACCCTAATAAAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGTTTTTTATCAGTTAAAGAATACGACACCTAGGGCAAATGGCAGGCCGTTATGGAAAGATCGACCACATGTCGGGAAATATAGTTTAACCCAAACTATCGGCAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTCGACAACCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8125#0 ACCAAGACGTAATGTCGGTTTCGATGCACACCCCATCAAATTATTATTATTGGCCTTCGG 60
consensus_8125#1 ------------------------------------------------------------
consensus_8125#0 GGACTACTCCTGGGCCTAACACCACGCCATACAACTACAGTGATGTCTCGTCACATACAT 120
consensus_8125#1 ---------------------------------------------------TACAATTTT 9
*** *
consensus_8125#0 ATGCAACCCCTACACCTGTATCCAAACCAAACAATGCAGCTGGTTATCTTAACCCTAATA 180
consensus_8125#1 CATCAATCATGGAACGTTATCACAAACCAAACAATGCAGATGGTTATCTCAACCCTAATA 69
*** * ** * ***************** ********* **********
consensus_8125#0 AAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGGAGCTCAGCAGTTAAAGAATA 240
consensus_8125#1 AAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGTTTTTTATCAGTTAAAGAATA 129
*************************************** * * *************
consensus_8125#0 CGACATCTAATTCAAATGGTAGGCCGTTATGGAAAGATCGACCACATGTTGGGAAATATA 300
consensus_8125#1 CGACACCTAGGGCAAATGGCAGGCCGTTATGGAAAGATCGACCACATGTCGGGAAATATA 189
***** *** ******* ***************************** **********
consensus_8125#0 GTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGA 360
consensus_8125#1 GTTTAACCCAAACTATCGGCAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTCGA 249
****** ************ ************************************* **
consensus_8125#0 CAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCACTCAAGTC 420
consensus_8125#1 CAACCG------------------------------------------------------ 255
******
consensus_8125#0 TACAGAAGCTTTTTCGTGAAGTTCGTGTTCTAAAAAGCTTGAATCATCCGAATATAATCA 480
consensus_8125#1 ------------------------------------------------------------
consensus_8125#0 AATTGTTGGAGGTTATTGAATCTGAAAAACATTTATACTTGGTCATGGAATATGCCAGTG 540
consensus_8125#1 ------------------------------------------------------------
consensus_8125#0 GAGGTGAAGTATTTGATTATCTTGTTTCACATGGTAAAATGAATGAAAAAGATGCACGAT 600
consensus_8125#1 ------------------------------------------------------------
consensus_8125#0 GTAAATTTCGTCAAATTGTTTCCGCTGTACAATATTGTCATCAAAAAATGATTGTTCATC 660
consensus_8125#1 ------------------------------------------------------------
consensus_8125#0 GAGACTTGAAAGCTGAAAATTTATTACTTGATGCTGAATTGAATATAAAAATAGCAGATT 720
consensus_8125#1 ------------------------------------------------------------
consensus_8125#0 TTGGATTTTCAAATTATTTTTCTAATTCACAAAAATTGGATACATTTTGTGGTAGTCCAC 780
consensus_8125#1 ------------------------------------------------------------
consensus_8125#0 CCTATGCTGCACCGGAATTGTTTTTAGGACGTAAATATGAAGGTCCTGAAGTTGATGTTT 840
consensus_8125#1 ------------------------------------------------------------
consensus_8125#0 GGTCATTANGTGTAATTCTATATACATTAGTTAGTGGTACATTGCCATTTGATGGAAAAA 900
consensus_8125#1 ------------------------------------------------------------
consensus_8125#0 ATCTAAAAGAATTGCGTGAACGTGTATTACGCGGTACCTATCGAGGGCCTTATTATAGAG 960
consensus_8125#1 ------------------------------------------------------------
consensus_8125#0 CGCA 964
consensus_8125#1 ----
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||