These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8125#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 964 fasta sequence [ACCAAGACGTAATGTCGGTTTCGATGCACACCCCATCAAATTATTATTATTGGCCTTCGGGGACTACTCCTGGGCCTAACACCACGCCATACAACTACAGTGATGTCTCGTCACATACATATGCAACCCCTACACCTGTATCCAAACCAAACAATGCAGCTGGTTATCTTAACCCTAATAAAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGGAGCTCAGCAGTTAAAGAATACGACATCTAATTCAAATGGTAGGCCGTTATGGAAAGATCGACCACATGTT-GGGAAATATAGTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGACAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCACTCAAGTCTACAGAAGCTTTTTCGTGAAGTTCGTGTTCTAAAAAGCTTGAATCATCCGAATATAATCAAATTGTTGGAGGTTATTG-AATCTGAAAAACATTTATACTTGGTCATGGAATATGCCAGTGGAGGTGAAGTATTTGA-TTATCTTGTTTCACATGGTAAAATGAATGAAAAAGATGCACGATGTAAATTTCGTCAAATTGTTTCCGCTGTACAATATTGTCATCAAAAAATGATTGTTCATCGAGACTTGAAAGCTGAAAATTTATTACTTGATGCTGAATTGAATATAAAAATAGCAGATTTTGGATTTTCAAATTATTTTTCTAATTCACAAAAATTGGATACATTTTGTGGTAGTCCACCCTATGCTGCACCGGAATTGTTTTTAGGACGTAAATATGAAGGTCCTGAAGTTGATGTTTGGTCATTANGTGTAATTCTATATACATTAGTTAGTGGTACATTGCCATTTGATGGAAAAAATCTAAAAGAATTGCGTGAACGTGTATTACGCGGTACCTATCGAGGGCCTTATTATAGAGCGCA] [-] EMBL CD186737 [ACCAAGACGTAATGTCGGTTTCGATGCACACCCCATCAAATTATTATTATTGGCCTTCGGGGACTACTCCTGGGCCTAACACCACGCCATACAACTACAGTGATGTCTCGTCACATACATATGCAACCCCTACACCTGTATCCAAACCAAACAATGCAGCTGGTTATCTTAACCCTAATAAAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGGAGCTCAGCAGTTAAAGAATACGACATCTAATTCAAATGGTAGGCCGTTATGGAAAGATCGACCACATGTT GGGAAATATAGTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGACAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCAC ] [+] EMBL CD196160 [ CTTAACCCTAATAAAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGGAGCTCAGCAGTTAAAGAATACGACATCTAATTCAAATGGTAGGCCGTTATGGAAAGATCGACCACATGTT GGGAAATATAGTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGACAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCACTCAAGTCTACAGAAGCTTTTTCGTGAAGTTCGTGTTCTAAAAAGCTTGAATCATCCGAATATAATCAAATTGTTGGAGNGTATTGAAATCTG AAAACATTTATACTTGGTCATGGAATATGCCAGTGGAGGTGAAGTATTTGATTTATC TGTTTCACATcg ] [-] EMBL CD196234 [ GAGCTCAGCAGTTAAAGAATACGACATCTAATTCAAATGGTAGGCCGTTATGGAAAGATCGACCACATGTTGGGGAAATATAGTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGACAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCACTCAAGTCTACAGAAGCTTTTTCGTGAAGTTCGTGTTCTAAAAAGCTTGAATCATCCGAATATAATCAAATTGTTGGAGGTTATTG AATCTGAAAAACATTTATACTTGGTCATGGAATATGCCAGTGGAGGTGAAGTATTTGA TTATCTTGTTTCACATGG ] [+] EMBL CD154123 [ TCGACCACATGTT GGGAAATATAGTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGACAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCACTCAAGTCTACAGAAGCTTTTTCGTGAAGTTCGTGTTCTAAAAAGCTTGAATCATCCGAATATAATCAAATTGTTGGAGGTTATTG AATCTGAAAAACATTTATACTTGGTCATGGAATATGCCAGTGGAGGTGAAGTATTTGA TTATCTTGTTTCACATGGTAAAATGAATGAAAAAGATGCACGATGTAAATTTCGTCAAATTGTTTCCGCTGTACAATATTGTCATCAAAAAATGATTGTTCATCGAGACTTGAAAGCTGAAAATTTATTACTTGATGCTGAATTGAATATAAAAATAGCAGATTTTGGATTTTCAAATTATTTTTCTAATTCACAAAAATTGGATACATTTTGTGGTAGTCCACCCTATGCTGCACCGGAATTGTTTTTAGGACGTAAATATGAAGGTCCTGAAGTTGATGTTTGGTCATTANGTGTAATTCTATATACATTAGTTAGTGGTACATTGCCATTTG ] [-] EMBL CD115280 [ GTAAAATGAATGAAAAAGATGCACGATGTANATTTCGTCAAATTGTTTCCGCTGTACAATATTGTCATCAAAAAATGATTGTTCATTGAGACTTGANAGCTGAANATTTATTACTTGATGCTGAATTGAATATAAAAATAGCAGATTTTGGATTTTCAAATTATTTTTCTAATTCACAAAAATTGGATACATTTTGTGGTAGTCCACCCTATGCTGCACCGGAATTGTTTTTAGGACGTAAATATGAAGGTCCTGAAGTTGATGTTTGGTCATTAGGTGTAATTCTATATACATTAGTTAGTGGTACATTGCCATTTGATGGAAAAAATCTAAAAGAATTGCGTGAACGTGTATTACGCGGTACCTATCGAGGGCCTTATTATAGAGCGCA] consensusID : consensus_8125#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [TACAATTTTCATCAATCATGGAACGTTATCACAAACCAAACAATGCAGATGGTTATCTCAACCCTAATAAAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGTTTTTTATCAGTTAAAGAATACGACACCTAGGGCAAATGGCAGGCCGTTATGGAAAGATCGACCACATGTCGGGAAATATAGTTTAACCCAAACTATCGGCAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTCGACAACCG] [+] EMBL CD115164 [TACAATTTTCATCAATCATGGAACGTTATCACAAACCAAACAATGCAGATGGTTATCTCAACCCTAATAAAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGTTTTTTATCAGTTAAAGAATACGACACCTAGGGCAAATGGCAGGCCGTTATGGAAAGATCGACCACATGTCGGGAAATATAGTTTAACCCAAACTATCGGCAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTCGACAACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8125#0 ACCAAGACGTAATGTCGGTTTCGATGCACACCCCATCAAATTATTATTATTGGCCTTCGG 60 consensus_8125#1 ------------------------------------------------------------ consensus_8125#0 GGACTACTCCTGGGCCTAACACCACGCCATACAACTACAGTGATGTCTCGTCACATACAT 120 consensus_8125#1 ---------------------------------------------------TACAATTTT 9 *** * consensus_8125#0 ATGCAACCCCTACACCTGTATCCAAACCAAACAATGCAGCTGGTTATCTTAACCCTAATA 180 consensus_8125#1 CATCAATCATGGAACGTTATCACAAACCAAACAATGCAGATGGTTATCTCAACCCTAATA 69 *** * ** * ***************** ********* ********** consensus_8125#0 AAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGGAGCTCAGCAGTTAAAGAATA 240 consensus_8125#1 AAAATGGTCTGACTAACAAAAATAATCCAACTAATCGGGTTTTTTATCAGTTAAAGAATA 129 *************************************** * * ************* consensus_8125#0 CGACATCTAATTCAAATGGTAGGCCGTTATGGAAAGATCGACCACATGTTGGGAAATATA 300 consensus_8125#1 CGACACCTAGGGCAAATGGCAGGCCGTTATGGAAAGATCGACCACATGTCGGGAAATATA 189 ***** *** ******* ***************************** ********** consensus_8125#0 GTTTAATCCAAACTATCGGTAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTTGA 360 consensus_8125#1 GTTTAACCCAAACTATCGGCAAGGGGAACTTTGCAAAGGTCAAACTCGCCCAGCATTCGA 249 ****** ************ ************************************* ** consensus_8125#0 CAACCGGAATGAAGGTTGCGGTCAAGGTAATCGACAAGACATTATTGAATCACTCAAGTC 420 consensus_8125#1 CAACCG------------------------------------------------------ 255 ****** consensus_8125#0 TACAGAAGCTTTTTCGTGAAGTTCGTGTTCTAAAAAGCTTGAATCATCCGAATATAATCA 480 consensus_8125#1 ------------------------------------------------------------ consensus_8125#0 AATTGTTGGAGGTTATTGAATCTGAAAAACATTTATACTTGGTCATGGAATATGCCAGTG 540 consensus_8125#1 ------------------------------------------------------------ consensus_8125#0 GAGGTGAAGTATTTGATTATCTTGTTTCACATGGTAAAATGAATGAAAAAGATGCACGAT 600 consensus_8125#1 ------------------------------------------------------------ consensus_8125#0 GTAAATTTCGTCAAATTGTTTCCGCTGTACAATATTGTCATCAAAAAATGATTGTTCATC 660 consensus_8125#1 ------------------------------------------------------------ consensus_8125#0 GAGACTTGAAAGCTGAAAATTTATTACTTGATGCTGAATTGAATATAAAAATAGCAGATT 720 consensus_8125#1 ------------------------------------------------------------ consensus_8125#0 TTGGATTTTCAAATTATTTTTCTAATTCACAAAAATTGGATACATTTTGTGGTAGTCCAC 780 consensus_8125#1 ------------------------------------------------------------ consensus_8125#0 CCTATGCTGCACCGGAATTGTTTTTAGGACGTAAATATGAAGGTCCTGAAGTTGATGTTT 840 consensus_8125#1 ------------------------------------------------------------ consensus_8125#0 GGTCATTANGTGTAATTCTATATACATTAGTTAGTGGTACATTGCCATTTGATGGAAAAA 900 consensus_8125#1 ------------------------------------------------------------ consensus_8125#0 ATCTAAAAGAATTGCGTGAACGTGTATTACGCGGTACCTATCGAGGGCCTTATTATAGAG 960 consensus_8125#1 ------------------------------------------------------------ consensus_8125#0 CGCA 964 consensus_8125#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||