cluster # 8133

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Schistosoma mansoni
cluster # 8133 cluster # 8133 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8133#0 length = 757 sequences # 3

consensus_8133#1 length = 409 sequences # 2
consensus_8133#2 length = 197 sequences # 1

consensusID : consensus_8133#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 757
fasta sequence

                              [CGAGCCAANAATTCGGCACGAGGGTGAACAAGGGAGAAAAATTAAATCGTGCTGAACAGAAACTTGAAGAAATTAGTGAATTGCAAAAAGACAGTCAAAAGAAAATTAATACTTTATCTAGTGTTTTCGGTGGATTTAAAAACATTTTTTCTCGAAGACAATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAATCAAAGTAATCTGAGACAATCAATTCAATGTGAAAATTCATGGGGCAATCAGTACACAAGTACATTGCAACAAAAGGTGATTGAACCCAACAACACCTCGAAATCTGCTGATGCTGAGTTTGAAAACAATTTAGCTTTGATGGGCGATGGCATGTCTCGATTAAAAAGTTTAGCTCAAGGTATGCATAATGAATTAAGAAATCAAAATGACCAACTTGATCGAATGGCACCGCAAATTCACCGAGTCACTGATACTATGTCAAATCAAAATCGTCAAATAAACAAATTATTAGGAATCCGACCAAAATAAACTGTTACTTCTTTCTTTTCTTCTGTGATTTCACTTTTTTTTTCAACTAAGATATTAATGCAGTAAATGCTGATGCACCGGTCTTGTTTGAGTATTTCGTTCGAAGAGACCTTTATTTCTGTTAATGTTTGATTTGNTCTTTNTTTTGTTGGCTATTCCCAACTGATTACATGTACACAGTTTGGTATTTTAATTNGA-TTATTGNNTA-TTTTTAAT-AACTANTC-ATATTC]

[+] EMBL CD082007             [CGAGCCAANAATTCGGCACGAGGGTGAACAAGGGAGAAAAATTAAATCGTGCTGAACAGAAACTTGAAGAAATTAGTGAATTGCAAAAAGACAGTCAAAAGAAAATTAATACTTTATCTAGTGTTTTCGGTGGATTTAAAAACATTTTTTCTCGAAGACAATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAATCAAAGTAATCTGAGACAATCAATTCAATGTGAAAATTCATGGGGCAATCAGTACACAAGTACATTGCAACAAAAGGTGATTGAACCCAACAACACCTCGAAATCTGCTGATGCTGAGTTTGAAAACAATTTAGCTTTGATGGGCGATGGCATGTCTCGATTAAAAAGTTTAGCTCAAGGTATGCATAATGAATTAAGAAATCAAAATGACCAACTTGATCGAATGGCACCGCAAATTCACCGAGTCACTGATACTATGTCAAATCAAAATCGTCAAATAAACAAATTATTAGGAATCCGACCAAAATAAACTGTTACTTCTTTCTTTTCTTCTGTGATTTCACTTTTTTTTTCAACTAAGATATTAATGCAGTAAATGCTGATGCACCGGTCTTGTTTGAGTATTTCGTTCGAAGAGACCTTTATTTCTGTTAATGTTTGATTTGNTCTTTNTTTTGTTGGCTATTCCCAACTGATTACATGTACACAGTTTGGTATTTTAATTNGA TTATTGNNTA TTTTTAAT AACTANTC ATATT ]
[+] EMBL CD132035             [                                                                                                                                GGTGGATTTAAAAACAGTTGTTCTCGAAGACAATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAATCAAAGTAATCTGAGACAATCAATTCAATGTGAAAATTCATGGGGCAATCAGTACACAAGTACATTGCAACAAAAG      GAACCCAACAACACCTCGAAATCTGCTGATGCTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD075621             [                                                                                                                                                                           TTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAATCAAAGTAATCTGAGACAATCAATTCAATGTGAAAATTCATGGGGCAATCAGTACACAAGTACATTGCAACAAAAGGTGATTGAACCCAACAACACCTCGAAATCTGCTGATGCTGAGTTTGAAAACAATTTAGCTTTGATGGGCGATGGCATGTCTCGATTAAAAAGTTTAGCTCAAGGTATGCATAATGAATTAAGAAATCAAAATGACCAACTTGATCGAATGGCACCGCAAATTCACCGAGTCACTGATACTATGTCAAATCAAAATCGTCAAATAAACAAATTATTAGGAATCCGACCAAAATAAACTGTTACTTCTTTCTTTTCTTCTGTGATTTCACTTTTTTTTTCAACTAAGATATTAATGCAGTAAATGCTGATGCACCGGTCTTGTTTGAGTATTTCGTTCGAAGAGACCTTTATTTCTGTTAATGTTTGATTTGTTCTTT TTTTGTTGGCTATTCCCAACTGATTACATGTACACAGTTTGTTATTTTAATT GATTTATTG TTATTTTTTAATAAACTA TCAATATTC]




>consensus_8133#0
CGAGCCAANAATTCGGCACGAGGGTGAACAAGGGAGAAAAATTAAATCGTGCTGAACAGA
AACTTGAAGAAATTAGTGAATTGCAAAAAGACAGTCAAAAGAAAATTAATACTTTATCTA
GTGTTTTCGGTGGATTTAAAAACATTTTTTCTCGAAGACAATCACAACCTGTTCCTCAAA
GCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAATCAAAGTAATCTGAGACAATCAA
TTCAATGTGAAAATTCATGGGGCAATCAGTACACAAGTACATTGCAACAAAAGGTGATTG
AACCCAACAACACCTCGAAATCTGCTGATGCTGAGTTTGAAAACAATTTAGCTTTGATGG
GCGATGGCATGTCTCGATTAAAAAGTTTAGCTCAAGGTATGCATAATGAATTAAGAAATC
AAAATGACCAACTTGATCGAATGGCACCGCAAATTCACCGAGTCACTGATACTATGTCAA
ATCAAAATCGTCAAATAAACAAATTATTAGGAATCCGACCAAAATAAACTGTTACTTCTT
TCTTTTCTTCTGTGATTTCACTTTTTTTTTCAACTAAGATATTAATGCAGTAAATGCTGA
TGCACCGGTCTTGTTTGAGTATTTCGTTCGAAGAGACCTTTATTTCTGTTAATGTTTGAT
TTGNTCTTTNTTTTGTTGGCTATTCCCAACTGATTACATGTACACAGTTTGGTATTTTAA
TTNGATTATTGNNTATTTTTAATAACTANTCATATTC

consensusID : consensus_8133#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 409
fasta sequence

                              [TATACAATTCAGAACAAATTGGTGTTGCAGCAGCCCAAGAACTTATTGAACAAGGAGAAAAATTAAATCGTGCTGAACAGAAACTTGAAGAAATTAGTGAATTGCAAAAAGACAGTCAAAAGAAAATTAATACTTTATCTAGTGTTTTCGGTGGATTTAAAAACATTTTTTCTCGAAGACAATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAATCAAAGTAATCTGAGACAATCAATTCAATATGAAAATTCATGGGGCAATCAGTACACAAGTACATTGCAACAAAAGGTGATTGAACCCAACAACACCTCGAAATCTGCTGATGCTGAGTTTGAAAACAATTTAGCTTTGATGGGCGATGGCATGTCTCGATTAAAAAGTTT]

[+] EMBL CD144839             [TATACAATTCAGAACAAATTGGTGTTGCAGCAGCCCAAGAACTTATTGAACAAGGAGAAAAATTAAATCGTGCTGAACAGAAACTTGAAGAAATTAGTGAATTGCAAAAAGACAGTCAAAAGAAAATTAATACTTTATCTAGTGTTTTCGGTGGATTTAAAAACATTTTTTCTCGAAGACAATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAATCAAAGTAATCTGAGACAATCAATTCAATATGAAAATTCATGGGGCAATCAGTACACAAGTACATTGCAACAAAAGGTGATTGAACCCAACAACACCTCGAAATCTGCTGATGCTGAGTTTGAAAACAATTTAGCTTTGATGGGCGATGGCATGTCTCGATTAAAAAGTTT]
[-] EMBL CD091453             [                                           TATTGAACAAGGAGAAAAATTAAATCGTGCTGAACAGAAACTTGAAGAAATTAGTGAATTGCAAAAAGACAGTCAAAAGAAAATTAATACTTTATCTAGTGTTTTCGGTGGATTTAAAAACATTTTTTCTCGAAGACAATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAATCAAAGTAATCTGAGACAATCAATTCAATGTGAAAATTCATGGGGCAATCAGT                                                                                                                      ]




>consensus_8133#1
TATACAATTCAGAACAAATTGGTGTTGCAGCAGCCCAAGAACTTATTGAACAAGGAGAAA
AATTAAATCGTGCTGAACAGAAACTTGAAGAAATTAGTGAATTGCAAAAAGACAGTCAAA
AGAAAATTAATACTTTATCTAGTGTTTTCGGTGGATTTAAAAACATTTTTTCTCGAAGAC
AATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAATC
AAAGTAATCTGAGACAATCAATTCAATATGAAAATTCATGGGGCAATCAGTACACAAGTA
CATTGCAACAAAAGGTGATTGAACCCAACAACACCTCGAAATCTGCTGATGCTGAGTTTG
AAAACAATTTAGCTTTGATGGGCGATGGCATGTCTCGATTAAAAAGTTT

consensusID : consensus_8133#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 197
fasta sequence

                              [CCGTTTGATGAAGATGAACCTGGGGGTCTTTCTTCTTCCTCTAAACCAACAAATTGGCAATACGCAGGGACTGCATCACCCGGGAAAAGCGAATTGCAATGTCAAATTTCAGATAGTCAGTCAAGAACAAAAGCTAGCCAACAACGTGCATTATCCAGTATATACAATTCAGAACAAATTGGTGTTGCAGAAGCCCA]

[+] EMBL SMAA8310             [CCGTTTGATGAAGATGAACCTGGGGGTCTTTCTTCTTCCTCTAAACCAACAAATTGGCAATACGCAGGGACTGCATCACCCGGGAAAAGCGAATTGCAATGTCAAATTTCAGATAGTCAGTCAAGAACAAAAGCTAGCCAACAACGTGCATTATCCAGTATATACAATTCAGAACAAATTGGTGTTGCAGAAGCCCA]




>consensus_8133#2
CCGTTTGATGAAGATGAACCTGGGGGTCTTTCTTCTTCCTCTAAACCAACAAATTGGCAA
TACGCAGGGACTGCATCACCCGGGAAAAGCGAATTGCAATGTCAAATTTCAGATAGTCAG
TCAAGAACAAAAGCTAGCCAACAACGTGCATTATCCAGTATATACAATTCAGAACAAATT
GGTGTTGCAGAAGCCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8133#0      ----------------------CGAGCCAANAATTCGGCACGAGGGTGAACAAGGGAGAA 38
consensus_8133#1      TATACAATTCAGAACAAATTGGTGTTGCAGCAGCCCAAGAACTTATTGAACAAGG-AGAA 59
consensus_8133#2      ------------------------------------------------------------
                                                                                  

consensus_8133#0      AAATTAAATCGTGCTGAACAGAAACTTGAAGAAATTAGTGAATTGCAAAAAGACAGTCAA 98
consensus_8133#1      AAATTAAATCGTGCTGAACAGAAACTTGAAGAAATTAGTGAATTGCAAAAAGACAGTCAA 119
consensus_8133#2      ------------------------------------------------------------
                                                                                  

consensus_8133#0      AAGAAAATTAATACTTTATCTAGTGTTTTCGGTGGATTTAAAAACATTTTTTCTCGAAGA 158
consensus_8133#1      AAGAAAATTAATACTTTATCTAGTGTTTTCGGTGGATTTAAAAACATTTTTTCTCGAAGA 179
consensus_8133#2      ----------------------------------------------CCGTTTGATGAAGA 14
                                                                       ***   *****

consensus_8133#0      CAATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAAT 218
consensus_8133#1      CAATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAAT 239
consensus_8133#2      TGAACCTGGG--GGTCTTTCTTCTTCCTCTA-AACCAACAAATTGGCAATACGCAGGGAC 71
                        * *       * ** *      *****    *   ****   *   *     **  * 

consensus_8133#0      CAAAGTAATCTGAGACAATCAATT-CAATGTGAAAATTCATGGGG-CAATCAGTACACAA 276
consensus_8133#1      CAAAGTAATCTGAGACAATCAATT-CAATATGAAAATTCATGGGG-CAATCAGTACACAA 297
consensus_8133#2      TGCATCACCCGGGAAAAGCGAATTGCAATGTCAAATTTCAGATAGTCAGTCAAGA-ACAA 130
                         *  *  * *  * *   **** **** * *** ****    * ** ***  * ****

consensus_8133#0      GTACATTGCAACAAAAGGTGATTGAACCCAACA-ACACCTCGAAATCTGCTGATGCTGAG 335
consensus_8133#1      GTACATTGCAACAAAAGGTGATTGAACCCAACA-ACACCTCGAAATCTGCTGATGCTGAG 356
consensus_8133#2      AAGCTAGCCAACAACGTGC-ATTATCCAGTATATACAATTCAGAACAAATTGGTGTTG-- 187
                         *    ******   *  ***   *   * * ***  **  **     ** ** **  

consensus_8133#0      TTTGAAAACAATTTAGCTTTGATGGGCGATGGCATGTCTCGATTAAAAAGTTTAGCTCAA 395
consensus_8133#1      TTTGAAAACAATTTAGCTTTGATGGGCGATGGCATGTCTCGATTAAAAAGTTT------- 409
consensus_8133#2      -CAGAAGCCCA------------------------------------------------- 197
                         ***  * *                                                 

consensus_8133#0      GGTATGCATAATGAATTAAGAAATCAAAATGACCAACTTGATCGAATGGCACCGCAAATT 455
consensus_8133#1      ------------------------------------------------------------
consensus_8133#2      ------------------------------------------------------------
                                                                                  

consensus_8133#0      CACCGAGTCACTGATACTATGTCAAATCAAAATCGTCAAATAAACAAATTATTAGGAATC 515
consensus_8133#1      ------------------------------------------------------------
consensus_8133#2      ------------------------------------------------------------
                                                                                  

consensus_8133#0      CGACCAAAATAAACTGTTACTTCTTTCTTTTCTTCTGTGATTTCACTTTTTTTTTCAACT 575
consensus_8133#1      ------------------------------------------------------------
consensus_8133#2      ------------------------------------------------------------
                                                                                  

consensus_8133#0      AAGATATTAATGCAGTAAATGCTGATGCACCGGTCTTGTTTGAGTATTTCGTTCGAAGAG 635
consensus_8133#1      ------------------------------------------------------------
consensus_8133#2      ------------------------------------------------------------
                                                                                  

consensus_8133#0      ACCTTTATTTCTGTTAATGTTTGATTTGNTCTTTNTTTTGTTGGCTATTCCCAACTGATT 695
consensus_8133#1      ------------------------------------------------------------
consensus_8133#2      ------------------------------------------------------------
                                                                                  

consensus_8133#0      ACATGTACACAGTTTGGTATTTTAATTNGATTATTGNNTATTTTTAATAACTANTCATAT 755
consensus_8133#1      ------------------------------------------------------------
consensus_8133#2      ------------------------------------------------------------
                                                                                  

consensus_8133#0      TC 757
consensus_8133#1      --
consensus_8133#2      --