These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8133#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 757 fasta sequence [CGAGCCAANAATTCGGCACGAGGGTGAACAAGGGAGAAAAATTAAATCGTGCTGAACAGAAACTTGAAGAAATTAGTGAATTGCAAAAAGACAGTCAAAAGAAAATTAATACTTTATCTAGTGTTTTCGGTGGATTTAAAAACATTTTTTCTCGAAGACAATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAATCAAAGTAATCTGAGACAATCAATTCAATGTGAAAATTCATGGGGCAATCAGTACACAAGTACATTGCAACAAAAGGTGATTGAACCCAACAACACCTCGAAATCTGCTGATGCTGAGTTTGAAAACAATTTAGCTTTGATGGGCGATGGCATGTCTCGATTAAAAAGTTTAGCTCAAGGTATGCATAATGAATTAAGAAATCAAAATGACCAACTTGATCGAATGGCACCGCAAATTCACCGAGTCACTGATACTATGTCAAATCAAAATCGTCAAATAAACAAATTATTAGGAATCCGACCAAAATAAACTGTTACTTCTTTCTTTTCTTCTGTGATTTCACTTTTTTTTTCAACTAAGATATTAATGCAGTAAATGCTGATGCACCGGTCTTGTTTGAGTATTTCGTTCGAAGAGACCTTTATTTCTGTTAATGTTTGATTTGNTCTTTNTTTTGTTGGCTATTCCCAACTGATTACATGTACACAGTTTGGTATTTTAATTNGA-TTATTGNNTA-TTTTTAAT-AACTANTC-ATATTC] [+] EMBL CD082007 [CGAGCCAANAATTCGGCACGAGGGTGAACAAGGGAGAAAAATTAAATCGTGCTGAACAGAAACTTGAAGAAATTAGTGAATTGCAAAAAGACAGTCAAAAGAAAATTAATACTTTATCTAGTGTTTTCGGTGGATTTAAAAACATTTTTTCTCGAAGACAATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAATCAAAGTAATCTGAGACAATCAATTCAATGTGAAAATTCATGGGGCAATCAGTACACAAGTACATTGCAACAAAAGGTGATTGAACCCAACAACACCTCGAAATCTGCTGATGCTGAGTTTGAAAACAATTTAGCTTTGATGGGCGATGGCATGTCTCGATTAAAAAGTTTAGCTCAAGGTATGCATAATGAATTAAGAAATCAAAATGACCAACTTGATCGAATGGCACCGCAAATTCACCGAGTCACTGATACTATGTCAAATCAAAATCGTCAAATAAACAAATTATTAGGAATCCGACCAAAATAAACTGTTACTTCTTTCTTTTCTTCTGTGATTTCACTTTTTTTTTCAACTAAGATATTAATGCAGTAAATGCTGATGCACCGGTCTTGTTTGAGTATTTCGTTCGAAGAGACCTTTATTTCTGTTAATGTTTGATTTGNTCTTTNTTTTGTTGGCTATTCCCAACTGATTACATGTACACAGTTTGGTATTTTAATTNGA TTATTGNNTA TTTTTAAT AACTANTC ATATT ] [+] EMBL CD132035 [ GGTGGATTTAAAAACAGTTGTTCTCGAAGACAATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAATCAAAGTAATCTGAGACAATCAATTCAATGTGAAAATTCATGGGGCAATCAGTACACAAGTACATTGCAACAAAAG GAACCCAACAACACCTCGAAATCTGCTGATGCTGAG ] [-] EMBL CD075621 [ TTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAATCAAAGTAATCTGAGACAATCAATTCAATGTGAAAATTCATGGGGCAATCAGTACACAAGTACATTGCAACAAAAGGTGATTGAACCCAACAACACCTCGAAATCTGCTGATGCTGAGTTTGAAAACAATTTAGCTTTGATGGGCGATGGCATGTCTCGATTAAAAAGTTTAGCTCAAGGTATGCATAATGAATTAAGAAATCAAAATGACCAACTTGATCGAATGGCACCGCAAATTCACCGAGTCACTGATACTATGTCAAATCAAAATCGTCAAATAAACAAATTATTAGGAATCCGACCAAAATAAACTGTTACTTCTTTCTTTTCTTCTGTGATTTCACTTTTTTTTTCAACTAAGATATTAATGCAGTAAATGCTGATGCACCGGTCTTGTTTGAGTATTTCGTTCGAAGAGACCTTTATTTCTGTTAATGTTTGATTTGTTCTTT TTTTGTTGGCTATTCCCAACTGATTACATGTACACAGTTTGTTATTTTAATT GATTTATTG TTATTTTTTAATAAACTA TCAATATTC] consensusID : consensus_8133#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 409 fasta sequence [TATACAATTCAGAACAAATTGGTGTTGCAGCAGCCCAAGAACTTATTGAACAAGGAGAAAAATTAAATCGTGCTGAACAGAAACTTGAAGAAATTAGTGAATTGCAAAAAGACAGTCAAAAGAAAATTAATACTTTATCTAGTGTTTTCGGTGGATTTAAAAACATTTTTTCTCGAAGACAATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAATCAAAGTAATCTGAGACAATCAATTCAATATGAAAATTCATGGGGCAATCAGTACACAAGTACATTGCAACAAAAGGTGATTGAACCCAACAACACCTCGAAATCTGCTGATGCTGAGTTTGAAAACAATTTAGCTTTGATGGGCGATGGCATGTCTCGATTAAAAAGTTT] [+] EMBL CD144839 [TATACAATTCAGAACAAATTGGTGTTGCAGCAGCCCAAGAACTTATTGAACAAGGAGAAAAATTAAATCGTGCTGAACAGAAACTTGAAGAAATTAGTGAATTGCAAAAAGACAGTCAAAAGAAAATTAATACTTTATCTAGTGTTTTCGGTGGATTTAAAAACATTTTTTCTCGAAGACAATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAATCAAAGTAATCTGAGACAATCAATTCAATATGAAAATTCATGGGGCAATCAGTACACAAGTACATTGCAACAAAAGGTGATTGAACCCAACAACACCTCGAAATCTGCTGATGCTGAGTTTGAAAACAATTTAGCTTTGATGGGCGATGGCATGTCTCGATTAAAAAGTTT] [-] EMBL CD091453 [ TATTGAACAAGGAGAAAAATTAAATCGTGCTGAACAGAAACTTGAAGAAATTAGTGAATTGCAAAAAGACAGTCAAAAGAAAATTAATACTTTATCTAGTGTTTTCGGTGGATTTAAAAACATTTTTTCTCGAAGACAATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAATCAAAGTAATCTGAGACAATCAATTCAATGTGAAAATTCATGGGGCAATCAGT ] consensusID : consensus_8133#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 197 fasta sequence [CCGTTTGATGAAGATGAACCTGGGGGTCTTTCTTCTTCCTCTAAACCAACAAATTGGCAATACGCAGGGACTGCATCACCCGGGAAAAGCGAATTGCAATGTCAAATTTCAGATAGTCAGTCAAGAACAAAAGCTAGCCAACAACGTGCATTATCCAGTATATACAATTCAGAACAAATTGGTGTTGCAGAAGCCCA] [+] EMBL SMAA8310 [CCGTTTGATGAAGATGAACCTGGGGGTCTTTCTTCTTCCTCTAAACCAACAAATTGGCAATACGCAGGGACTGCATCACCCGGGAAAAGCGAATTGCAATGTCAAATTTCAGATAGTCAGTCAAGAACAAAAGCTAGCCAACAACGTGCATTATCCAGTATATACAATTCAGAACAAATTGGTGTTGCAGAAGCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8133#0 ----------------------CGAGCCAANAATTCGGCACGAGGGTGAACAAGGGAGAA 38 consensus_8133#1 TATACAATTCAGAACAAATTGGTGTTGCAGCAGCCCAAGAACTTATTGAACAAGG-AGAA 59 consensus_8133#2 ------------------------------------------------------------ consensus_8133#0 AAATTAAATCGTGCTGAACAGAAACTTGAAGAAATTAGTGAATTGCAAAAAGACAGTCAA 98 consensus_8133#1 AAATTAAATCGTGCTGAACAGAAACTTGAAGAAATTAGTGAATTGCAAAAAGACAGTCAA 119 consensus_8133#2 ------------------------------------------------------------ consensus_8133#0 AAGAAAATTAATACTTTATCTAGTGTTTTCGGTGGATTTAAAAACATTTTTTCTCGAAGA 158 consensus_8133#1 AAGAAAATTAATACTTTATCTAGTGTTTTCGGTGGATTTAAAAACATTTTTTCTCGAAGA 179 consensus_8133#2 ----------------------------------------------CCGTTTGATGAAGA 14 *** ***** consensus_8133#0 CAATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAAT 218 consensus_8133#1 CAATCACAACCTGTTCCTCAAAGCTCCTCCGTGATAGACAAGACGTTGAATAATAGAAAT 239 consensus_8133#2 TGAACCTGGG--GGTCTTTCTTCTTCCTCTA-AACCAACAAATTGGCAATACGCAGGGAC 71 * * * ** * ***** * **** * * ** * consensus_8133#0 CAAAGTAATCTGAGACAATCAATT-CAATGTGAAAATTCATGGGG-CAATCAGTACACAA 276 consensus_8133#1 CAAAGTAATCTGAGACAATCAATT-CAATATGAAAATTCATGGGG-CAATCAGTACACAA 297 consensus_8133#2 TGCATCACCCGGGAAAAGCGAATTGCAATGTCAAATTTCAGATAGTCAGTCAAGA-ACAA 130 * * * * * * **** **** * *** **** * ** *** * **** consensus_8133#0 GTACATTGCAACAAAAGGTGATTGAACCCAACA-ACACCTCGAAATCTGCTGATGCTGAG 335 consensus_8133#1 GTACATTGCAACAAAAGGTGATTGAACCCAACA-ACACCTCGAAATCTGCTGATGCTGAG 356 consensus_8133#2 AAGCTAGCCAACAACGTGC-ATTATCCAGTATATACAATTCAGAACAAATTGGTGTTG-- 187 * ****** * *** * * * *** ** ** ** ** ** consensus_8133#0 TTTGAAAACAATTTAGCTTTGATGGGCGATGGCATGTCTCGATTAAAAAGTTTAGCTCAA 395 consensus_8133#1 TTTGAAAACAATTTAGCTTTGATGGGCGATGGCATGTCTCGATTAAAAAGTTT------- 409 consensus_8133#2 -CAGAAGCCCA------------------------------------------------- 197 *** * * consensus_8133#0 GGTATGCATAATGAATTAAGAAATCAAAATGACCAACTTGATCGAATGGCACCGCAAATT 455 consensus_8133#1 ------------------------------------------------------------ consensus_8133#2 ------------------------------------------------------------ consensus_8133#0 CACCGAGTCACTGATACTATGTCAAATCAAAATCGTCAAATAAACAAATTATTAGGAATC 515 consensus_8133#1 ------------------------------------------------------------ consensus_8133#2 ------------------------------------------------------------ consensus_8133#0 CGACCAAAATAAACTGTTACTTCTTTCTTTTCTTCTGTGATTTCACTTTTTTTTTCAACT 575 consensus_8133#1 ------------------------------------------------------------ consensus_8133#2 ------------------------------------------------------------ consensus_8133#0 AAGATATTAATGCAGTAAATGCTGATGCACCGGTCTTGTTTGAGTATTTCGTTCGAAGAG 635 consensus_8133#1 ------------------------------------------------------------ consensus_8133#2 ------------------------------------------------------------ consensus_8133#0 ACCTTTATTTCTGTTAATGTTTGATTTGNTCTTTNTTTTGTTGGCTATTCCCAACTGATT 695 consensus_8133#1 ------------------------------------------------------------ consensus_8133#2 ------------------------------------------------------------ consensus_8133#0 ACATGTACACAGTTTGGTATTTTAATTNGATTATTGNNTATTTTTAATAACTANTCATAT 755 consensus_8133#1 ------------------------------------------------------------ consensus_8133#2 ------------------------------------------------------------ consensus_8133#0 TC 757 consensus_8133#1 -- consensus_8133#2 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||