cluster # 8136

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Schistosoma mansoni
cluster # 8136 cluster # 8136 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8136#0 length = 779 sequences # 5

consensus_8136#1 length = 264 sequences # 1

consensusID : consensus_8136#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 779
fasta sequence

                              [GTGGTGTTGATTAGAGTGAGACTTTCCAATTGATGTTTTTGTGCTCATTCAGTCATCTTTTTGATTTGAATCCAATTCATGTTACTCCATAAACCTTCCAGACCCTGACATTTAATTTCACGTTT--AACAAAATACAGTATGAGGTTTATACAGCTAATAATTGGCTGTGAA-CAATGTGTTTACTG-TTTTTTCTGACTCTGTTTATTCAGTATACTCTGAGGATAGAATCTGATATATTTTCACAGCTGGGACAATATGAGTTATTTGAGAGACCATCCTTTCGTATCGCTCGAGATATTAGTGGACGGCAGACCAGGCAAACCGTGTTTTATGCATGGGGAAGGTAATTATTTTTTTTACTCATTCCTCTAGACCATGGTACTTGATTCTCTATCGTGAAACATCTTTTCATAATTCTAACTTGTCAGTCAGATTTATCAGTACAAATGGTACCTACTCTTTTTATCCGAAAAGAAAATATGCAGAACTACATACTGGCTATGTATCAGGTTCAAACCAATCATTTGTGTTAGCTCATTTGGAACCATACACTTCACTCCTTAGCGCTCATATTCATGTGGAATCAGATATTTTTGTTATTGAGCCATTGTCTGACTACATTAACTATATTGGGAACAATTCCATGTTAATTTATCGCCTAAGAGATATTCAAATTAAAAAGATACTAAATAATCCAATGAATTATAAATCAGCCACTTTATTGGCCCTAGAAACTGATACATTTGATATCTACA-TAGACGAAAACGATTTATCCCCGC]

[+] EMBL CD190130             [GTGGTGTTGATTAGA     ACTTTCCAATTGATGTTTTTGTGCTCATTCAGTCATCTTTTTGATTTGAATCCAATTCATGTTACTCCATAAACCTTCCAGACCCTGACATTTAATTTCACGTTT  AACAAAATACAGTATGAGGTTTATACAGCTAATAATTGGCTGTGAA CAATGTGTTTACTGTTTTTTTCTGACTCTGTTTATTCAGTATACTCTGAGGATAGAATCTGATATATTTTCACAGCTGGGACAATATGAGTTATTTGAGAGACCATCCTTTCGTATCGCTCGAGATATTAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD160983             [ TGGTGTTGATTAGAGTGAGACTTTCCAATTGATGTTTTTGTGCTCATTCAGTCATCTTTTTGATTTGAATCCAATTCATGTTACTCCATAAACCTTCCAGACCCTGACATTTAATTTCACGTTT  AACAAAATACAGTATGAGGTTTATACAGCTAATAATTGGCTGTGAA CAATGTGTTTACTG TTTTTTCTGACTCTGTTTATTCAGTATACTCTGAGGATAGAATCTGATATATTTTCACAGCTGGGACAATATGAGTTATTTGAGAGACCATCCTTTCGTATCGCTCGAGATATTAGTGGACGGCAGACCAGGCAAACCGTGTTTTATGCATGGGGAAGGTAATTATTTTTTTTACTCATTCCTCTAGACCATGGTACTTGATTCTCTATCGTGAAACATCTTTTCATAATTCTAACTTGTCAGTCAGATTTATCAGTACAAATGGTACCTACTCTTTTTATCCGAAAAGAAAATATGCAGAACTACATACTGGCTATGTATCAGGTTCAAACCAATCATTTGTGTTAGCTCATTTGGAACCATACACTTCACTCCTTAGCGCTCATATTCATGTGGAATCAGATATTTTTGTTATTGAGCCATTGTCTGACTACATTAAC                                                                                                                                                           ]
[+] EMBL CD161207             [ TGGTGTTGATTAGAGTGAGACTTTCCAATTGATGTTTTTGTGCTCATTCAGTCATCTTTTTGATTTGAATCCAATTCATGTTACTCCATAAACCTTCCAGACCCTGACATTTAA TTC CTTTTAAAACAAAATACAGTATGAGGTTTATCCCGCTAATAATTGG TGGGAACCAATGTGTTTACTG TTTTTTCTGACTCTGTTTATTCAGTATACTCTGAGGATAGAATCTGATATATTTTCACAGCTGGGACAATATGAGTTATTTGAGAGACCATCCTTTCGTATCGCTCGAGATATTAGTGGACGGCAGACCANGCAAACCGTGTTTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD161339             [                                                                                                                                                                                                TTTCTGACTCTGTTTATTCAGTATACTCTGAGGATAGAATCTGATATATTTTCACAGCTGGGACAATATGAGTTA TTGAGAGACCATCCTTTCGTATCGCTCGAGATATTAGTGGACGGCAGACCAGGCAAACCGTGTTTTATGCATGGGGAAGGTAATTA TTTTTTTACTCATTCCTCTAGACCATGGTACTTGATTCTCTATCGTGAAACATCTTTTCATAATTCTAACTTGTCAGTCAGATTTATCAGTACAAATGGTACCTACTCTTTTTATCCGAAAAGAAAATATACAGAACTACATACTGGCTATGTATCAGGTTCAAACCAATCATTTGTGTTAGCTCATTTGGAACCATACACTTCACTCCTTAGCGCTCATATTCATGTGGAATCAGATATTTTTGTTATTGAGCCATTGTCTGACTACATTAACTATATTGGGAACAATTCCATGTTAATTTATCGCCTAAGAGATATTCAAATTAAAAAGATACTAAATAATCCAATGAATTATAAATCAGCCACTTTATTGGCCCTAGAAACTGATACATTTGATATCTACATTAGACGAAAACGATTT        ]
[-] EMBL CD200134             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATATTCATGTGGAATCAGATATTTTTGTTATTGAGCCATTGTCTGACTACATTAACTATATTGGGAACAATTCCATGTTAATTTATCGCCTAAGAGATATTCAAATTAAAAAGATACTAAATAATCCAATGAATTATAAATCAGCCACTTTATTGGCCCTAGAAACTGATACATTTGATATCTACA TAGACGAAAACGATTTATCCCCGC]




>consensus_8136#0
GTGGTGTTGATTAGAGTGAGACTTTCCAATTGATGTTTTTGTGCTCATTCAGTCATCTTT
TTGATTTGAATCCAATTCATGTTACTCCATAAACCTTCCAGACCCTGACATTTAATTTCA
CGTTTAACAAAATACAGTATGAGGTTTATACAGCTAATAATTGGCTGTGAACAATGTGTT
TACTGTTTTTTCTGACTCTGTTTATTCAGTATACTCTGAGGATAGAATCTGATATATTTT
CACAGCTGGGACAATATGAGTTATTTGAGAGACCATCCTTTCGTATCGCTCGAGATATTA
GTGGACGGCAGACCAGGCAAACCGTGTTTTATGCATGGGGAAGGTAATTATTTTTTTTAC
TCATTCCTCTAGACCATGGTACTTGATTCTCTATCGTGAAACATCTTTTCATAATTCTAA
CTTGTCAGTCAGATTTATCAGTACAAATGGTACCTACTCTTTTTATCCGAAAAGAAAATA
TGCAGAACTACATACTGGCTATGTATCAGGTTCAAACCAATCATTTGTGTTAGCTCATTT
GGAACCATACACTTCACTCCTTAGCGCTCATATTCATGTGGAATCAGATATTTTTGTTAT
TGAGCCATTGTCTGACTACATTAACTATATTGGGAACAATTCCATGTTAATTTATCGCCT
AAGAGATATTCAAATTAAAAAGATACTAAATAATCCAATGAATTATAAATCAGCCACTTT
ATTGGCCCTAGAAACTGATACATTTGATATCTACATAGACGAAAACGATTTATCCCCGC

consensusID : consensus_8136#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 264
fasta sequence

                              [GTCTCTTTATATCCGAAAAGAAAATATGCAGAACTACATACTGGCTATGTATCAGGTTCAAACCAATCATTTGTGTTAGCTCATTTGGAACCATACACTTCACTCCTTAGCGCTCATATTCATGTGGAATCAGATATTTTTGTTATTGAGCCATTGTCTGACTACATTAGCTATATTGGGAACGATTCCATGTTAATTTATCGCCTAGGAGATATTCGGATTAGCAAGATACTAGAATATCTACATTAGACGAAAACGATTTGA]

[+] EMBL BG931006             [GTCTCTTTATATCCGAAAAGAAAATATGCAGAACTACATACTGGCTATGTATCAGGTTCAAACCAATCATTTGTGTTAGCTCATTTGGAACCATACACTTCACTCCTTAGCGCTCATATTCATGTGGAATCAGATATTTTTGTTATTGAGCCATTGTCTGACTACATTAGCTATATTGGGAACGATTCCATGTTAATTTATCGCCTAGGAGATATTCGGATTAGCAAGATACTAGAATATCTACATTAGACGAAAACGATTTGA]




>consensus_8136#1
GTCTCTTTATATCCGAAAAGAAAATATGCAGAACTACATACTGGCTATGTATCAGGTTCA
AACCAATCATTTGTGTTAGCTCATTTGGAACCATACACTTCACTCCTTAGCGCTCATATT
CATGTGGAATCAGATATTTTTGTTATTGAGCCATTGTCTGACTACATTAGCTATATTGGG
AACGATTCCATGTTAATTTATCGCCTAGGAGATATTCGGATTAGCAAGATACTAGAATAT
CTACATTAGACGAAAACGATTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8136#0      GTGGTGTTGATTAGAGTGAGACTTTCCAATTGATGTTTTTGTGCTCATTCAGTCATCTTT 60
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      TTGATTTGAATCCAATTCATGTTACTCCATAAACCTTCCAGACCCTGACATTTAATTTCA 120
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      CGTTTAACAAAATACAGTATGAGGTTTATACAGCTAATAATTGGCTGTGAACAATGTGTT 180
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      TACTGTTTTTTCTGACTCTGTTTATTCAGTATACTCTGAGGATAGAATCTGATATATTTT 240
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      CACAGCTGGGACAATATGAGTTATTTGAGAGACCATCCTTTCGTATCGCTCGAGATATTA 300
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      GTGGACGGCAGACCAGGCAAACCGTGTTTTATGCATGGGGAAGGTAATTATTTTTTTTAC 360
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      TCATTCCTCTAGACCATGGTACTTGATTCTCTATCGTGAAACATCTTTTCATAATTCTAA 420
consensus_8136#1      ------------------------------------------------------------
                                                                                  

consensus_8136#0      CTTGTCAGTCAGATTTATCAGTACAAATGGTACCTACTCTTTTTATCCGAAAAGAAAATA 480
consensus_8136#1      ----------------------------------GTCTCTTTATATCCGAAAAGAAAATA 26
                                                          ****** *****************

consensus_8136#0      TGCAGAACTACATACTGGCTATGTATCAGGTTCAAACCAATCATTTGTGTTAGCTCATTT 540
consensus_8136#1      TGCAGAACTACATACTGGCTATGTATCAGGTTCAAACCAATCATTTGTGTTAGCTCATTT 86
                      ************************************************************

consensus_8136#0      GGAACCATACACTTCACTCCTTAGCGCTCATATTCATGTGGAATCAGATATTTTTGTTAT 600
consensus_8136#1      GGAACCATACACTTCACTCCTTAGCGCTCATATTCATGTGGAATCAGATATTTTTGTTAT 146
                      ************************************************************

consensus_8136#0      TGAGCCATTGTCTGACTACATTAACTATATTGGGAACAATTCCATGTTAATTTATCGCCT 660
consensus_8136#1      TGAGCCATTGTCTGACTACATTAGCTATATTGGGAACGATTCCATGTTAATTTATCGCCT 206
                      *********************** ************* **********************

consensus_8136#0      AAGAGATATTCAAATTAAAAAGATACTAAATAATCCAATGAATTATAAATCAGCCACTTT 720
consensus_8136#1      AGGAGATATTCGGATTAGCAAGATACTAGAATATC---TACATTAGACGAAAACGATTTG 263
                      * *********  ****  ********* *  ***   *  **** *    * * * ** 

consensus_8136#0      ATTGGCCCTAGAAACTGATACATTTGATATCTACATAGACGAAAACGATTTATCCCCGC 779
consensus_8136#1      A---------------------------------------------------------- 264
                      *