cluster # 8146

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Schistosoma mansoni
cluster # 8146 cluster # 8146 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8146#0 length = 841 sequences # 2

consensus_8146#1 length = 606 sequences # 4

consensusID : consensus_8146#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 841
fasta sequence

                              [ACAAATCAAGCTTATCTATATAATGATAGAAACACCCTAGGGAAAGCCACAAAATAGCTTACTAAAAAAATCCGTCAACCAATTACAGTCAAGGAATTCCGAGTGGGAAATATAAAGTGCAGGTCAACTAAGCGTTTCTTGGCGCGAAAACAGAATAAAATTACATAATTAGGACATTTTCCAAGTGAGTTCTGGGGATTTAATGTCCCCAACAAATAGAAACTCATTTATTCATTGTATCAAAGGAAGCTCAATTTTAACTATCTATTCATACACTTTAAAGCTATGACTTAACAGTATAGGTTCTCAATCTTCAATCAGTGAATCTTCAATCTAGAGCTTATTGATTGTACCGCTATTTGTATGAATAACCATCAATAACATCAACACTTAGGGTTTCTCATAAACTAGGAAGTTGAATGTGGTTGCTTTGATGCATAATTGTTCGATACAAAGGTATATGTGTACCGTCAAGTGTTTAACAAATTACCTCTTATAGCTCCTTTCTGTTTCACTACTTCTCATGACAATCATTGTAACTTTATGCTATGACANAGTAGTTATAAGGAGTTTAATTNTAATGTTNTTTTCTATGTAAGTAGGCAACAGTAATTAAAAAAACTACAGTTCTATAAGTGTTCATCAATCTGTAATAATAAGATCTCCCATGTGACTATTTTTAAATCCTACTTTTCTTTTCTATTAAGCGTAATTCACAAATTATAAATTTTGTATGTTAATCAAAGCTGTACTCATTCTGTTGTTTTTTTCTAGGTGAAGAAACGTCGAGCTTAAGCAGAACCAACACTATAAATTTTAAGACATTTATATAATACATTTG]

[+] EMBL CD079025             [ACAAATCAAGCTTATCTATATAATGATAGAAACACCCTAGGGAAAGCCACAAAATAGCTTACTAAAAAAATCCGTCAACCAATTACAGTCAAGGAATTCCGAGTGGGAAATATAAAGTGCAGGTCAACTAAGCGTTTCTTGGCGCGAAAACAGAATAAAATTACATAATTAGGACATTTTCCAAGTGAGTTCTGGGGATTTAATGTCCCCAACAAATAGAAACTCATTTATTCATTGTATCAAAGGAAGCTCAATTTTAACTATCTATTCATACACTTTAAAGCTATGACTTAACAGTATAGGTTCTCAATCTTCAATCAGTGAATCTTCAATCTAGAGCTTATTGATTGTACCGCTATTTGTATGAATAACCATCAATAACATCAACACTTAGGGTTTCTCATAAACTAGGAAGTTGAATGTGGTTGCTTTGATGCATAATTGTTCGATACAAAGGTATATGTGTACCGTCAAGTGTTTAACAAATTACCTCTTATAGCTCCTTTCTGTTTCACTACTTCTCATGACAATCATTGTAACTTTATGCTATGACANAGTAGTTATAAGGAGTTTAATTNTAATGTTNTTTTCTATGTAAGTAGGCAACAGTAATTAAAAA                                                                                                                                                                                                                              ]
[-] EMBL CD073476             [                                                                                                                                                                                                                                                                                            TATGACTTAACAGTATAGGTTCTCAATCTTCAATCAGTGAATCTTCAATCTAGAGCTTATTGATTGTACCGCTATTTGTATGAATAACCATCAATAACATCAACACTTAGGGTTTCTCATAAACTAGGAAGTTGAATGTGGTTGCTTTGATGCATAATTGTTCGATACAAAGGTATATGTGTACCGTCAAGTGTTTAACAAATTACCTCTTATAGCTCCTTTCTGTTTCACTACTTCTCATGACAATCATTGTAACTTTATGCTATGACAAAGTAGTTATAAGGAGTTTAATTTTAATGTTTTTTTCTATGTAAGTAGGCAACAGTAATTAAAAAAACTACAGTTCTATAAGTGTTCATCAATCTGTAATAATAAGATCTCCCATGTGACTATTTTTAAATCCTACTTTTCTTTTCTATTAAGCGTAATTCACAAATTATAAATTTTGTATGTTAATCAAAGCTGTACTCATTCTGTTGTTTTTTTCTAGGTGAAGAAACGTCGAGCTTAAGCAGAACCAACACTATAAATTTTAAGACATTTATATAATACATTTG]




>consensus_8146#0
ACAAATCAAGCTTATCTATATAATGATAGAAACACCCTAGGGAAAGCCACAAAATAGCTT
ACTAAAAAAATCCGTCAACCAATTACAGTCAAGGAATTCCGAGTGGGAAATATAAAGTGC
AGGTCAACTAAGCGTTTCTTGGCGCGAAAACAGAATAAAATTACATAATTAGGACATTTT
CCAAGTGAGTTCTGGGGATTTAATGTCCCCAACAAATAGAAACTCATTTATTCATTGTAT
CAAAGGAAGCTCAATTTTAACTATCTATTCATACACTTTAAAGCTATGACTTAACAGTAT
AGGTTCTCAATCTTCAATCAGTGAATCTTCAATCTAGAGCTTATTGATTGTACCGCTATT
TGTATGAATAACCATCAATAACATCAACACTTAGGGTTTCTCATAAACTAGGAAGTTGAA
TGTGGTTGCTTTGATGCATAATTGTTCGATACAAAGGTATATGTGTACCGTCAAGTGTTT
AACAAATTACCTCTTATAGCTCCTTTCTGTTTCACTACTTCTCATGACAATCATTGTAAC
TTTATGCTATGACANAGTAGTTATAAGGAGTTTAATTNTAATGTTNTTTTCTATGTAAGT
AGGCAACAGTAATTAAAAAAACTACAGTTCTATAAGTGTTCATCAATCTGTAATAATAAG
ATCTCCCATGTGACTATTTTTAAATCCTACTTTTCTTTTCTATTAAGCGTAATTCACAAA
TTATAAATTTTGTATGTTAATCAAAGCTGTACTCATTCTGTTGTTTTTTTCTAGGTGAAG
AAACGTCGAGCTTAAGCAGAACCAACACTATAAATTTTAAGACATTTATATAATACATTT
G

consensusID : consensus_8146#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 606
fasta sequence

                              [CAAATGTATTATATAAATGTCTTAAAATTTATAGTGTTGGTTCTGCTTAAGCTCGACGTTTCTTCACAATTCTATCGAAGGCAGCATCAAATAATCCAGCAGTTTGATCTTGAGCTGGATTAGCACCTTTATTATCATATTCACCAGGAGAATTCTTACGCTTTAATCGATGTTGCGGAAAAGATGGCATCATATCAGGTTCGCATGGTAAAGGATGTTCACGGAAATAAGAACTCTGACAGCATTCACGAGCCCGAGCCCGTTTAGACGGATCATACATGAACAAAAAATTTAATAAACGCAAACCAGCATCTGACAACCATGGGAAAGTATGGCGCAAATTATTGTACGGTTGCTTTTTCAGATTTATTTTCTCTAAAGCTGGTAATTTTGAAAGATTCGGCCAAATTTGATCATTCGGAGTGCCCAATAAATCAATAATTAGCTCCAGTTGGTGAACCTCTGTCTTCCCGGGAAGAAGCGGTTTGTGTAATAAAAGCTCACCCATAATACAGCCGGCTGACCATATATCAACAGCTTTAGTTTGGTTCTTATCGCCAAGTAAAATTTCCGGTGCTCGGTACCATAATGTAACAACGCAAGGAG]

[+] EMBL CD073622             [CAAATGTATTATATAAATGTCTTAAAATTTATAGTGTTGGTTCTGCTTAAGCTCGACGTTTCTTCACAATTCTATCGAAGGCAGCATCAAATAATCCAGCAGTTTGATCTTGAGCTGGATTAGCACCTTTATTATCATATTCACCAGGAGAATTCTTACGCTTTAATCGATGTTGCGGAAAAGATGGCATCATATCAGGTTCGCATGGTAAAGGATGTTCACGGAAATAAGAACTCTGACAGCATTCACGAGCCCGAGCCCGTTTAGACGG                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD079345             [ AAATGTATTATATAAATGTCTTAAAATTTATAGTGTTGGTTCTGCTTAAGCTCGACGTTTCTTCACAATTCTATCGAAGGCAGCATCAAATAATCCAGCAGTTTGATCTTGAGCTGGATTAGCCCCTTTATTATCATATTCCCCAGGAGAATTCTTACGCTTTAATCGATGTTGCGGAAAAGATGGCATCATATCAGGTTCGCATGGTAAAGGATGTTCACGGAAATAAGAACTCTGACAGCATTCACGAGCCCGAGCCCGTTTAGACGGA                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD149782             [                                                                CACAATTCTATCGAAGGCAGCATCAAATAATCCAGCAGTTTGATCTTGAGCTGGATTAGCACCTTTATTATCATATTCACCAGGAGAATTCTTACGCTTTAATCGATGTTGCGGAAAAGATGGCATCATATCAGGTTCGCATGGTAAAGGATGTTCACGGAAATAAGAACTCTGACAGCATTCACGAGCCCGAGCCCGTTTAGACGGATCATACATGAACAAAAAATTTAATAAACGCAAACCAGCATCTGACAACCATGGGAAAGTATGGCGCAAATTATTGTACGGTTGCTTTTTCAGATTTATTTTCTCTAAAGCTGGTAATTTTGAAAGATTCGGCCAAATTTGATCATTCGGAGTGCCCAATAAATCAATAATTAGCTCCAGTTGGTGAACCT                                                                                                                                                ]
[+] EMBL CD136167             [                                                                                                                                                                                   AAAGATGGCATCATATCAGGTTCGCATGGTAAAGGATGTTCACGGAAATAAGAACTCTGACAGCATTCACGAGCCCGAGCCCGTTTAGACGGATCATACATGAACAAAAAATTTAATAAACGCAAACCAGCATCTGACAACCATGGGAAAGTATGGCGCAAATTATTGTACGGTTGCTTTTTCAGATTTATTTTCTCTAAAGCTGGTAATTTTGAAAGATTCGGCCAAACTTGATCATTCGGAGTGCCCAATAAATCAATAATTAGCTCCAGTTGGTGAACCTCTGTCTTCCCGGGAAGAAGCGGTTTGTGTAATAAAAGCTCACCCATAATACAGCCGGCTGACCATATATCAACAGCTTTAGTTTGGTTCTTATCGCCAAGTAAAATTTCCGGTGCTCGGTACCATAATGTAACAACGCAAGGAG]




>consensus_8146#1
CAAATGTATTATATAAATGTCTTAAAATTTATAGTGTTGGTTCTGCTTAAGCTCGACGTT
TCTTCACAATTCTATCGAAGGCAGCATCAAATAATCCAGCAGTTTGATCTTGAGCTGGAT
TAGCACCTTTATTATCATATTCACCAGGAGAATTCTTACGCTTTAATCGATGTTGCGGAA
AAGATGGCATCATATCAGGTTCGCATGGTAAAGGATGTTCACGGAAATAAGAACTCTGAC
AGCATTCACGAGCCCGAGCCCGTTTAGACGGATCATACATGAACAAAAAATTTAATAAAC
GCAAACCAGCATCTGACAACCATGGGAAAGTATGGCGCAAATTATTGTACGGTTGCTTTT
TCAGATTTATTTTCTCTAAAGCTGGTAATTTTGAAAGATTCGGCCAAATTTGATCATTCG
GAGTGCCCAATAAATCAATAATTAGCTCCAGTTGGTGAACCTCTGTCTTCCCGGGAAGAA
GCGGTTTGTGTAATAAAAGCTCACCCATAATACAGCCGGCTGACCATATATCAACAGCTT
TAGTTTGGTTCTTATCGCCAAGTAAAATTTCCGGTGCTCGGTACCATAATGTAACAACGC
AAGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8146#0      ACAAATCAAGCTTATCTATATA-ATGATAGAAACACCCTAGGGAAAGCCACAAAATAGCT 59
consensus_8146#1      ----------------CAAATGTATTATATAAATGTCTTA---AAATTTATAGTGTTGGT 41
                                       * **  ** *** ***   * **   ***   * *   * * *

consensus_8146#0      TACTAAAAAAATCCGTCAACCAATTACAGTCAAGGAATTCCGAGTGGGAAATATAAAGTG 119
consensus_8146#1      T-CTGCTTAAGCTCGACGTTTCTTCACAATTC-----TATCGAA--GGCAGCATCAAAT- 92
                      * **    **   ** *      * *** *       *  ***   ** *  ** ** * 

consensus_8146#0      CAGGTCAACTAAGCGTTTCTTGGCGCGAAAACAGAATAAAATTACATAATTAGGACATTT 179
consensus_8146#1      ------AATCCAGCAGTT--TGATCTTGAGCTGGATTAGCAC--CTTTATTATCATATTC 142
                            **   ***  **  **      *    ** **  *   * * ****  * *** 

consensus_8146#0      TCCAAGTGAGTTCTGGGGATTTAATGTCCCCAACAAATAGAAACTCATTTATTCATTGTA 239
consensus_8146#1      ACCAGGAGAATTCTTACGCTTTAATCGATGTTGCGGAAAAGA-------------TGGCA 189
                       *** * ** ****   * ******        *  * *  *             * * *

consensus_8146#0      TCAAAGGAAGCTCAATTTTAACTATCTATTCATACACTTTAAAGCTATGACTTAACAGTA 299
consensus_8146#1      TCATATCAGGTTCGCATGGTAAAGGATGTTCACGGAAATAAGAACTCTGAC--AGCA-TT 246
                      *** *  * * **   *   *     * ****   *  * * * ** ****  * ** * 

consensus_8146#0      TAGGTTCTCAATCTTCAATCAGTGAATCTTCAATCTAGAGCTTATTGATTGTACCGCTAT 359
consensus_8146#1      CACGAGCCCGAGCCCGTTTAGACGGATCATACATGAACAAAAAATTTAATAAACGCAAAC 306
                       * *  * * * *     *    * *** *  **  * *    *** * *  **    * 

consensus_8146#0      TTGTATG-AATAACCATCAATAACATCAACACTTAGGGTTTCTCATAAACTAGGAAGTTG 418
consensus_8146#1      CAGCATCTGACAACCATGGGAAAGTATGGCGC---AAATTATTGTACGGTTGCTTTTTCA 363
                        * **   * ******    **      * *      **  *       *      *  

consensus_8146#0      AATGTGGTTGCTTTGATGC--ATAATTGTTCGATACAAAGGTATATGTGTACCGTCA-AG 475
consensus_8146#1      GATTTATTTTCTCTAAAGCTGGTAATTTTGAAAGATTCGGCCAAATTTGATCATTCGGAG 423
                       ** *  ** ** * * **   ***** *   * *    *  * ** **  *  **  **

consensus_8146#0      TGTTTAACAAATTACCTCTTATAGCTCCTTTCTGTTTCACTACTTCTCATGACAATCATT 535
consensus_8146#1      TGCCCAATAAATCAATAATTAGCTCCAGTTGGTGAACCTCTGTCTTCCCGGGAAGAAGCG 483
                      **   ** **** *    ***   *   **  **   * **   *  *  *  *      

consensus_8146#0      GTAACTTTATGCTATGACANAGTAGTTATAAGG-AGTTTAATTNTAATGTTNTTTTCTAT 594
consensus_8146#1      GT----TTGTGTAATAAAAGCTCACCCATAATACAGCCGGCTGACCATATATCAACAGCT 539
                      **    ** **  ** * *    *   ****   **     *    ** *         *

consensus_8146#0      GTAAGTAGGCAACAGTAATTAAAAAAACTACAGTTCTATAAGTGTTCATCAATCTGTAAT 654
consensus_8146#1      TTAGTTTGGTTCTTATCGCCAAGTAAAAT----TTCCGGTGCTCGGTACCATAATGTAAC 595
                       **  * **      *    **  *** *    ***      *    * **   ***** 

consensus_8146#0      AATAAGATCTCCCATGTGACTATTTTTAAATCCTACTTTTCTTTTCTATTAAGCGTAATT 714
consensus_8146#1      AACGCAAGGAG------------------------------------------------- 606
                      **    *                                                     

consensus_8146#0      CACAAATTATAAATTTTGTATGTTAATCAAAGCTGTACTCATTCTGTTGTTTTTTTCTAG 774
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      GTGAAGAAACGTCGAGCTTAAGCAGAACCAACACTATAAATTTTAAGACATTTATATAAT 834
consensus_8146#1      ------------------------------------------------------------
                                                                                  

consensus_8146#0      ACATTTG 841
consensus_8146#1      -------