These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8153#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 845 fasta sequence [GGAAAATAAAGTAGGCGAAACACTTAACGGAAACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAGAGAAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAGGTAGATGAATGTACAGAATCTGACTCGAGCTCTGATAGTGAACCTGAAAAGCCAGTAAAAAAGAAGAAAAAGAAGACTTCGGATGATGAAGATTATGCCCGGAGTTTGCATGCCGAAGCTAATGGTATGAGACGAAGAAGCAGTTCCAGCACCAAACCAAGATCTCAAAAGCAACCCGGGAGCGGGAAGACGGGTTTTACACGTCCTTTAACATTATCTGACGAGATGGCTGAGTACGTTGGTGAGAAAGAACTGTCCCGTTCTGATTTTGTC-AAAAATTCTGGGAAATTGCTAGGGAACAAGATTTATTCGTAAGTAATTACTTTCCCAACTGTATAATTGGCTAGGACCCAAACAACAAGCAGTTTGTCGTGTGTAATGAAGATTGGCAAAGATTGTTCAACCTAAAACGTTTTTGTATGTTTGGAGTTGCAAAGCATTTAAAACGACATATAATTGGGTAACTTTTTATAAAACTCATCTCATCATAAGTATATTTGCCATGTACCCCAGACCATGTAAATTTATGCATAACCTGATGGTTTGCCGTCAGGCCTATTTGAAATAAATTCCTG] [-] EMBL CD189386 [GGAAAATAAAGTAGGCGAAACACTTAACGGAAACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAGAGAAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAGGTAGATGAATGTACAGAATCTGACTCGAGCTCTGATAGTGAA ] [+] EMBL CD141971 [ GTAGGCGAAACACTTAACGGAAACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAGAGAAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAGGTAGATGAATGTACAGAATCTGACTCGAGCTCTGATAGTGAACCTGAAAAGCCAGTAAAAAAGAAGAAAAAGAAGACTTCGGATGATGAAGATTATGCCCGGAGTTTGCATGCCGAAGCTAATGGTATGAGACGAAGAAGCAGTTCCAGCACCAAACCAAGATCTCAAAAGCAACCCGGGAGCGGGAAGACGGGTTTTACACGTCCTTTAACATTATCTGACGAGATGGCTGAGTACGTTGGTGAGAAAGAACTGTCCCGTTCTGATTTTGTC AAAAATTCTGGGA ] [-] EMBL CD073936 [ AAAAAGAAAAAGAAGACTTCGGATGATGAAGATTATGCCCGGAGTTTGCATGCCGAAGCTAATGGTATGAGACGAAGAAGCAGTTCCAGCACCAAACCAAGATTTCAAAAGCAACCCGGGAGCGGGAAGACGGGTTTTACACGTCCTTTAACATTATCTGACGAGATGGCTGAGTACATTGGTGAGAAAAAACTGTCCCGTTTTGATTTAGTCAAAAAATTTTGGGAAATTGCTAGGGAACAAGATTTATTCGTAAGTAATTACTTTCCCAACTGTATAATTGGCTAGGACCCAAACAACAAGCAGTTTGTCGTGTGTAATGAAGATTGGCAAAGATTGTTCAACCTAAAACGTTTTTGTATGTTTGGAGTTGCAAAGCATTTAAAACGACATATAATTGGGTAACTTTTTATAAAACTCATCTCATCATAAGTATATTTGCCATGTACCCCAGACCATGTAAATTTATGCATAACCTGATGGTTTGCCGTCAGGCCTATTTGAAATAAATTCCTG] consensusID : consensus_8153#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence [CCTCCCGGCCAANAATTTGGCACGAGGTTCACGGAAACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAGAGAAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAGGTAGATGAATGTACAGAATCTGACTCGAGCTCTGATAGTGAACCTGAAAAGCCAGTAAAAAAGAAGAAAAAGAAGACTTCGGATGATGAAGATTATGCCCGGAGTTTGCATGCCGAAGCTAATGGTATGAGACGAAGAAGCAGTTCCAGCACCAAACCAAGATCTCAAAAGCAACCCGGGAGCGGGAAGACGGGTTTTACACGTCCTTTAACATTATCTGACGAGATGGCTGAGTACATTGGTGAGAAAGAACTGTCCCGTTCTGATTTAGTCAAAAAATTCTGGGAAATTGCTAGGGAACAAGATTTATTCGACCCAAACAACAAGCAGNTTTGTCGTGTGTAATGAAGATTGGCAAAGATTGTTCAACCTAAAACGTTTTCGTATGTTTGGAGTTGCAAGCATTTAAACGACATATATTGGGTAACNTNTATAAACTCATCTCATCATAGTATATTTGCCTGTACCCAGACCTGTAATTATGCTACCTGATGTTTGCGTCAGCTATTCAATAAT] [+] EMBL CD080853 [CCTCCCGGCCAANAATTTGGCACGAGGTTCACGGAAACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAGAGAAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAGGTAGATGAATGTACAGAATCTGACTCGAGCTCTGATAGTGAACCTGAAAAGCCAGTAAAAAAGAAGAAAAAGAAGACTTCGGATGATGAAGATTATGCCCGGAGTTTGCATGCCGAAGCTAATGGTATGAGACGAAGAAGCAGTTCCAGCACCAAACCAAGATCTCAAAAGCAACCCGGGAGCGGGAAGACGGGTTTTACACGTCCTTTAACATTATCTGACGAGATGGCTGAGTACATTGGTGAGAAAGAACTGTCCCGTTCTGATTTAGTCAAAAAATTCTGGGAAATTGCTAGGGAACAAGATTTATTCGACCCAAACAACAAGCAGNTTTGTCGTGTGTAATGAAGATTGGCAAAGATTGTTCAACCTAAAACGTTTTCGTATGTTTGGAGTTGCAAGCATTTAAACGACATATATTGGGTAACNTNTATAAACTCATCTCATCATAGTATATTTGCCTGTACCCAGACCTGTAATTATGCTACCTGATGTTTGCGTCAGCTATTCAATAAT] consensusID : consensus_8153#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [CCTAGTGGATTGAATATGGGATTTAAACTTTGAGATTCGAGAAGCGAACTAAATAAAGTAGGCGAAACACTTAACGGAAACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAGAGAGTAAGATTCTGGAAGTTATTTCTAGATAATGGGACTAAGAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAGGTAGATGAATGTACAGAATCTGACTCGAGCTCTGATAGTGA] [+] EMBL CD131996 [CCTAGTGGATTGAATATGGGATTTAAACTTTGAGATTCGAGAAGCGAACTAAATAAAGTAGGCGAAACACTTAACGGAAACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAGAGAGTAAGATTCTGGAAGTTATTTCTAGATAATGGGACTAAGAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAGGTAGATGAATGTACAGAATCTGACTCGAGCTCTGATAGTGA] consensusID : consensus_8153#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [TCAGGGNCACTATCAGAGCTCCAGTAAGATTCTGGAAGTTATTTCTAGATAATGGGACTAAGAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGTGCGTCTTGGGCCTTAAATAATATTTGGGCTTTATCTGAACGAGGTAGATGAATGTACA] [+] EMBL CD079676 [TCAGGGNCACTATCAGAGCTCCAGTAAGATTCTGGAAGTTATTTCTAGATAATGGGACTAAGAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGTGCGTCTTGGGCCTTAAATAATATTTGGGCTTTATCTGAACGAGGTAGATGAATGTACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8153#2 CCTAGTGGATTGAATATGGGATTTAAACTTTGAGATTCGAGAAGCGAACTAAATAAAGTA 60 consensus_8153#3 ------------------------------------------------------------ consensus_8153#0 ------------------------------------------------------------ consensus_8153#1 ------------------------------------------------------------ consensus_8153#2 GGCGAAACACTTAACGGAAACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAA 120 consensus_8153#3 -------------------------------------------TCAGGGNCACTATCAGA 17 consensus_8153#0 ----------------------------GGAAAATAAAGTAGGCGAAACACTTAACGGAA 32 consensus_8153#1 -----------------------CCTCCCGGCCAANAATTTGGCACGAGGTTCA-CGGAA 36 * consensus_8153#2 TAGAGAG---TAAGATTCTGGAAGTTATTTCTAGATAATGGGACTAAGAAATTCTACAGG 177 consensus_8153#3 GCTCCAG---TAAGATTCTGGAAGTTATTTCTAGATAATGGGACTAAGAAATTCTACAGG 74 consensus_8153#0 ACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAG-AGAAAATTCTACAGG 91 consensus_8153#1 ACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAG-AGAAAATTCTACAGG 95 * ** **** *** * * ** * * * ************ consensus_8153#2 ATGCCGATCTCTCCCAAGTGACGTCGAAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTC 237 consensus_8153#3 ATGCCGATCTCTCCCAAGTGACGTCGAAAAAA-GTAAGGTCGGCACTAGAGGCTCATTTC 133 consensus_8153#0 ATGCCGATCTCTCCCAAGTGACGTCGAAAAAA-GTAAGGTCGGCACTAGAGGCTCATTTC 150 consensus_8153#1 ATGCCGATCTCTCCCAAGTGACGTCGAAAAAA-GTAAGGTCGGCACTAGAGGCTCATTTC 154 ******************************** *************************** consensus_8153#2 AACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAG 297 consensus_8153#3 AACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAG 193 consensus_8153#0 AACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAG 210 consensus_8153#1 AACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAG 214 ************************************************************ consensus_8153#2 AAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAG 357 consensus_8153#3 AAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGTG 253 consensus_8153#0 AAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAG 270 consensus_8153#1 AAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAG 274 ********************************************************** * consensus_8153#2 GTAGATGAATGTACAGAATCTGACTCGAGCTCTGAT--AGTGA----------------- 398 consensus_8153#3 CGTCTTGGGCCTT--AAATAATATTTGGGCTTTATCTGAACGAGGTAGATGAATGTACA- 310 consensus_8153#0 GTAGATGAATGTACAGAATCTGACTCGAGCTCTGAT--AGTGAACCTGAAAAGCCAGTAA 328 consensus_8153#1 GTAGATGAATGTACAGAATCTGACTCGAGCTCTGAT--AGTGAACCTGAAAAGCCAGTAA 332 ** * *** * * * *** * * ** consensus_8153#2 ------------------------------------------------------------ consensus_8153#3 ------------------------------------------------------------ consensus_8153#0 AAAAGAAGAAAAAGAAGACTTCGGATGATGAAGATTATGCCCGGAGTTTGCATGCCGAAG 388 consensus_8153#1 AAAAGAAGAAAAAGAAGACTTCGGATGATGAAGATTATGCCCGGAGTTTGCATGCCGAAG 392 consensus_8153#2 ------------------------------------------------------------ consensus_8153#3 ------------------------------------------------------------ consensus_8153#0 CTAATGGTATGAGACGAAGAAGCAGTTCCAGCACCAAACCAAGATCTCAAAAGCAACCCG 448 consensus_8153#1 CTAATGGTATGAGACGAAGAAGCAGTTCCAGCACCAAACCAAGATCTCAAAAGCAACCCG 452 consensus_8153#2 ------------------------------------------------------------ consensus_8153#3 ------------------------------------------------------------ consensus_8153#0 GGAGCGGGAAGACGGGTTTTACACGTCCTTTAACATTATCTGACGAGATGGCTGAGTACG 508 consensus_8153#1 GGAGCGGGAAGACGGGTTTTACACGTCCTTTAACATTATCTGACGAGATGGCTGAGTACA 512 consensus_8153#2 ------------------------------------------------------------ consensus_8153#3 ------------------------------------------------------------ consensus_8153#0 TTGGTGAGAAAGAACTGTCCCGTTCTGATTTTGTCAAAAA-TTCTGGGAAATTGCTAGGG 567 consensus_8153#1 TTGGTGAGAAAGAACTGTCCCGTTCTGATTTAGTCAAAAAATTCTGGGAAATTGCTAGGG 572 consensus_8153#2 ------------------------------------------------------------ consensus_8153#3 ------------------------------------------------------------ consensus_8153#0 AACAAGATTTATTCGTAAGTAATTACTTTCCCAACTGTATAATTGGCTAGGACCCAAACA 627 consensus_8153#1 AACAAGATTTATTCG------------------------------------ACCCAAACA 596 consensus_8153#2 ------------------------------------------------------------ consensus_8153#3 ------------------------------------------------------------ consensus_8153#0 ACAAGCAGTTT-GTCGTGTGTAATGAAGATTGGCAAAGATTGTTCAACCTAAAACGTTTT 686 consensus_8153#1 ACAAGCAGNTTTGTCGTGTGTAATGAAGATTGGCAAAGATTGTTCAACCTAAAACGTTTT 656 consensus_8153#2 ------------------------------------------------------------ consensus_8153#3 ------------------------------------------------------------ consensus_8153#0 TGTATGTTTGGAGTTGCAAAGCATTTAAAACGACATATAATTGGGTAACTTTTTATAAAA 746 consensus_8153#1 CGTATGTTTGGAGTTGCAA-GCATTTAAA-CGACATATA-TTGGGTAACNTNT-ATAAA- 711 consensus_8153#2 ------------------------------------------------------------ consensus_8153#3 ------------------------------------------------------------ consensus_8153#0 CTCATCTCATCATAAGTATATTTGCCATGTACCCCAGACCATGTAAATTTATGCATAACC 806 consensus_8153#1 CTCATCTCATCATA-GTATATTTGCC-TGTACCC-AGACC-TGTAA--TTATGCT--ACC 763 consensus_8153#2 --------------------------------------- consensus_8153#3 --------------------------------------- consensus_8153#0 TGATGGTTTGCCGTCAGGCCTATTTGAAATAAATTCCTG 845 consensus_8153#1 TGATG-TTTGC-GTCAG--CTATTC--AATAAT------ 790 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||