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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8153#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 845 fasta sequence
[GGAAAATAAAGTAGGCGAAACACTTAACGGAAACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAGAGAAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAGGTAGATGAATGTACAGAATCTGACTCGAGCTCTGATAGTGAACCTGAAAAGCCAGTAAAAAAGAAGAAAAAGAAGACTTCGGATGATGAAGATTATGCCCGGAGTTTGCATGCCGAAGCTAATGGTATGAGACGAAGAAGCAGTTCCAGCACCAAACCAAGATCTCAAAAGCAACCCGGGAGCGGGAAGACGGGTTTTACACGTCCTTTAACATTATCTGACGAGATGGCTGAGTACGTTGGTGAGAAAGAACTGTCCCGTTCTGATTTTGTC-AAAAATTCTGGGAAATTGCTAGGGAACAAGATTTATTCGTAAGTAATTACTTTCCCAACTGTATAATTGGCTAGGACCCAAACAACAAGCAGTTTGTCGTGTGTAATGAAGATTGGCAAAGATTGTTCAACCTAAAACGTTTTTGTATGTTTGGAGTTGCAAAGCATTTAAAACGACATATAATTGGGTAACTTTTTATAAAACTCATCTCATCATAAGTATATTTGCCATGTACCCCAGACCATGTAAATTTATGCATAACCTGATGGTTTGCCGTCAGGCCTATTTGAAATAAATTCCTG]
[-] EMBL CD189386 [GGAAAATAAAGTAGGCGAAACACTTAACGGAAACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAGAGAAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAGGTAGATGAATGTACAGAATCTGACTCGAGCTCTGATAGTGAA ]
[+] EMBL CD141971 [ GTAGGCGAAACACTTAACGGAAACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAGAGAAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAGGTAGATGAATGTACAGAATCTGACTCGAGCTCTGATAGTGAACCTGAAAAGCCAGTAAAAAAGAAGAAAAAGAAGACTTCGGATGATGAAGATTATGCCCGGAGTTTGCATGCCGAAGCTAATGGTATGAGACGAAGAAGCAGTTCCAGCACCAAACCAAGATCTCAAAAGCAACCCGGGAGCGGGAAGACGGGTTTTACACGTCCTTTAACATTATCTGACGAGATGGCTGAGTACGTTGGTGAGAAAGAACTGTCCCGTTCTGATTTTGTC AAAAATTCTGGGA ]
[-] EMBL CD073936 [ AAAAAGAAAAAGAAGACTTCGGATGATGAAGATTATGCCCGGAGTTTGCATGCCGAAGCTAATGGTATGAGACGAAGAAGCAGTTCCAGCACCAAACCAAGATTTCAAAAGCAACCCGGGAGCGGGAAGACGGGTTTTACACGTCCTTTAACATTATCTGACGAGATGGCTGAGTACATTGGTGAGAAAAAACTGTCCCGTTTTGATTTAGTCAAAAAATTTTGGGAAATTGCTAGGGAACAAGATTTATTCGTAAGTAATTACTTTCCCAACTGTATAATTGGCTAGGACCCAAACAACAAGCAGTTTGTCGTGTGTAATGAAGATTGGCAAAGATTGTTCAACCTAAAACGTTTTTGTATGTTTGGAGTTGCAAAGCATTTAAAACGACATATAATTGGGTAACTTTTTATAAAACTCATCTCATCATAAGTATATTTGCCATGTACCCCAGACCATGTAAATTTATGCATAACCTGATGGTTTGCCGTCAGGCCTATTTGAAATAAATTCCTG]
consensusID : consensus_8153#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence
[CCTCCCGGCCAANAATTTGGCACGAGGTTCACGGAAACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAGAGAAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAGGTAGATGAATGTACAGAATCTGACTCGAGCTCTGATAGTGAACCTGAAAAGCCAGTAAAAAAGAAGAAAAAGAAGACTTCGGATGATGAAGATTATGCCCGGAGTTTGCATGCCGAAGCTAATGGTATGAGACGAAGAAGCAGTTCCAGCACCAAACCAAGATCTCAAAAGCAACCCGGGAGCGGGAAGACGGGTTTTACACGTCCTTTAACATTATCTGACGAGATGGCTGAGTACATTGGTGAGAAAGAACTGTCCCGTTCTGATTTAGTCAAAAAATTCTGGGAAATTGCTAGGGAACAAGATTTATTCGACCCAAACAACAAGCAGNTTTGTCGTGTGTAATGAAGATTGGCAAAGATTGTTCAACCTAAAACGTTTTCGTATGTTTGGAGTTGCAAGCATTTAAACGACATATATTGGGTAACNTNTATAAACTCATCTCATCATAGTATATTTGCCTGTACCCAGACCTGTAATTATGCTACCTGATGTTTGCGTCAGCTATTCAATAAT]
[+] EMBL CD080853 [CCTCCCGGCCAANAATTTGGCACGAGGTTCACGGAAACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAGAGAAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAGGTAGATGAATGTACAGAATCTGACTCGAGCTCTGATAGTGAACCTGAAAAGCCAGTAAAAAAGAAGAAAAAGAAGACTTCGGATGATGAAGATTATGCCCGGAGTTTGCATGCCGAAGCTAATGGTATGAGACGAAGAAGCAGTTCCAGCACCAAACCAAGATCTCAAAAGCAACCCGGGAGCGGGAAGACGGGTTTTACACGTCCTTTAACATTATCTGACGAGATGGCTGAGTACATTGGTGAGAAAGAACTGTCCCGTTCTGATTTAGTCAAAAAATTCTGGGAAATTGCTAGGGAACAAGATTTATTCGACCCAAACAACAAGCAGNTTTGTCGTGTGTAATGAAGATTGGCAAAGATTGTTCAACCTAAAACGTTTTCGTATGTTTGGAGTTGCAAGCATTTAAACGACATATATTGGGTAACNTNTATAAACTCATCTCATCATAGTATATTTGCCTGTACCCAGACCTGTAATTATGCTACCTGATGTTTGCGTCAGCTATTCAATAAT]
consensusID : consensus_8153#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence
[CCTAGTGGATTGAATATGGGATTTAAACTTTGAGATTCGAGAAGCGAACTAAATAAAGTAGGCGAAACACTTAACGGAAACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAGAGAGTAAGATTCTGGAAGTTATTTCTAGATAATGGGACTAAGAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAGGTAGATGAATGTACAGAATCTGACTCGAGCTCTGATAGTGA]
[+] EMBL CD131996 [CCTAGTGGATTGAATATGGGATTTAAACTTTGAGATTCGAGAAGCGAACTAAATAAAGTAGGCGAAACACTTAACGGAAACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAGAGAGTAAGATTCTGGAAGTTATTTCTAGATAATGGGACTAAGAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAGGTAGATGAATGTACAGAATCTGACTCGAGCTCTGATAGTGA]
consensusID : consensus_8153#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence
[TCAGGGNCACTATCAGAGCTCCAGTAAGATTCTGGAAGTTATTTCTAGATAATGGGACTAAGAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGTGCGTCTTGGGCCTTAAATAATATTTGGGCTTTATCTGAACGAGGTAGATGAATGTACA]
[+] EMBL CD079676 [TCAGGGNCACTATCAGAGCTCCAGTAAGATTCTGGAAGTTATTTCTAGATAATGGGACTAAGAAATTCTACAGGATGCCGATCTCTCCCAAGTGACGTCGAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTCAACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAGAAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGTGCGTCTTGGGCCTTAAATAATATTTGGGCTTTATCTGAACGAGGTAGATGAATGTACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8153#2 CCTAGTGGATTGAATATGGGATTTAAACTTTGAGATTCGAGAAGCGAACTAAATAAAGTA 60
consensus_8153#3 ------------------------------------------------------------
consensus_8153#0 ------------------------------------------------------------
consensus_8153#1 ------------------------------------------------------------
consensus_8153#2 GGCGAAACACTTAACGGAAACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAA 120
consensus_8153#3 -------------------------------------------TCAGGGNCACTATCAGA 17
consensus_8153#0 ----------------------------GGAAAATAAAGTAGGCGAAACACTTAACGGAA 32
consensus_8153#1 -----------------------CCTCCCGGCCAANAATTTGGCACGAGGTTCA-CGGAA 36
*
consensus_8153#2 TAGAGAG---TAAGATTCTGGAAGTTATTTCTAGATAATGGGACTAAGAAATTCTACAGG 177
consensus_8153#3 GCTCCAG---TAAGATTCTGGAAGTTATTTCTAGATAATGGGACTAAGAAATTCTACAGG 74
consensus_8153#0 ACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAG-AGAAAATTCTACAGG 91
consensus_8153#1 ACTCATGGCCTACCCATCTGACAGTCAGCTTCTGACCAAAATAG-AGAAAATTCTACAGG 95
* ** **** *** * * ** * * * ************
consensus_8153#2 ATGCCGATCTCTCCCAAGTGACGTCGAAAAAAAGTAAGGTCGGCACTAGAGGCTCATTTC 237
consensus_8153#3 ATGCCGATCTCTCCCAAGTGACGTCGAAAAAA-GTAAGGTCGGCACTAGAGGCTCATTTC 133
consensus_8153#0 ATGCCGATCTCTCCCAAGTGACGTCGAAAAAA-GTAAGGTCGGCACTAGAGGCTCATTTC 150
consensus_8153#1 ATGCCGATCTCTCCCAAGTGACGTCGAAAAAA-GTAAGGTCGGCACTAGAGGCTCATTTC 154
******************************** ***************************
consensus_8153#2 AACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAG 297
consensus_8153#3 AACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAG 193
consensus_8153#0 AACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAG 210
consensus_8153#1 AACATTGATTTGTCCACCGAAAAATCCAAGTTAGAGACTATGATAATGTCCACATTGGAG 214
************************************************************
consensus_8153#2 AAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAG 357
consensus_8153#3 AAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGTG 253
consensus_8153#0 AAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAG 270
consensus_8153#1 AAACTACAGTCTTCAAAGTCCCAGAACAGGAATAACAGCAAACTCAGCAGCAGTCCTGAG 274
********************************************************** *
consensus_8153#2 GTAGATGAATGTACAGAATCTGACTCGAGCTCTGAT--AGTGA----------------- 398
consensus_8153#3 CGTCTTGGGCCTT--AAATAATATTTGGGCTTTATCTGAACGAGGTAGATGAATGTACA- 310
consensus_8153#0 GTAGATGAATGTACAGAATCTGACTCGAGCTCTGAT--AGTGAACCTGAAAAGCCAGTAA 328
consensus_8153#1 GTAGATGAATGTACAGAATCTGACTCGAGCTCTGAT--AGTGAACCTGAAAAGCCAGTAA 332
** * *** * * * *** * * **
consensus_8153#2 ------------------------------------------------------------
consensus_8153#3 ------------------------------------------------------------
consensus_8153#0 AAAAGAAGAAAAAGAAGACTTCGGATGATGAAGATTATGCCCGGAGTTTGCATGCCGAAG 388
consensus_8153#1 AAAAGAAGAAAAAGAAGACTTCGGATGATGAAGATTATGCCCGGAGTTTGCATGCCGAAG 392
consensus_8153#2 ------------------------------------------------------------
consensus_8153#3 ------------------------------------------------------------
consensus_8153#0 CTAATGGTATGAGACGAAGAAGCAGTTCCAGCACCAAACCAAGATCTCAAAAGCAACCCG 448
consensus_8153#1 CTAATGGTATGAGACGAAGAAGCAGTTCCAGCACCAAACCAAGATCTCAAAAGCAACCCG 452
consensus_8153#2 ------------------------------------------------------------
consensus_8153#3 ------------------------------------------------------------
consensus_8153#0 GGAGCGGGAAGACGGGTTTTACACGTCCTTTAACATTATCTGACGAGATGGCTGAGTACG 508
consensus_8153#1 GGAGCGGGAAGACGGGTTTTACACGTCCTTTAACATTATCTGACGAGATGGCTGAGTACA 512
consensus_8153#2 ------------------------------------------------------------
consensus_8153#3 ------------------------------------------------------------
consensus_8153#0 TTGGTGAGAAAGAACTGTCCCGTTCTGATTTTGTCAAAAA-TTCTGGGAAATTGCTAGGG 567
consensus_8153#1 TTGGTGAGAAAGAACTGTCCCGTTCTGATTTAGTCAAAAAATTCTGGGAAATTGCTAGGG 572
consensus_8153#2 ------------------------------------------------------------
consensus_8153#3 ------------------------------------------------------------
consensus_8153#0 AACAAGATTTATTCGTAAGTAATTACTTTCCCAACTGTATAATTGGCTAGGACCCAAACA 627
consensus_8153#1 AACAAGATTTATTCG------------------------------------ACCCAAACA 596
consensus_8153#2 ------------------------------------------------------------
consensus_8153#3 ------------------------------------------------------------
consensus_8153#0 ACAAGCAGTTT-GTCGTGTGTAATGAAGATTGGCAAAGATTGTTCAACCTAAAACGTTTT 686
consensus_8153#1 ACAAGCAGNTTTGTCGTGTGTAATGAAGATTGGCAAAGATTGTTCAACCTAAAACGTTTT 656
consensus_8153#2 ------------------------------------------------------------
consensus_8153#3 ------------------------------------------------------------
consensus_8153#0 TGTATGTTTGGAGTTGCAAAGCATTTAAAACGACATATAATTGGGTAACTTTTTATAAAA 746
consensus_8153#1 CGTATGTTTGGAGTTGCAA-GCATTTAAA-CGACATATA-TTGGGTAACNTNT-ATAAA- 711
consensus_8153#2 ------------------------------------------------------------
consensus_8153#3 ------------------------------------------------------------
consensus_8153#0 CTCATCTCATCATAAGTATATTTGCCATGTACCCCAGACCATGTAAATTTATGCATAACC 806
consensus_8153#1 CTCATCTCATCATA-GTATATTTGCC-TGTACCC-AGACC-TGTAA--TTATGCT--ACC 763
consensus_8153#2 ---------------------------------------
consensus_8153#3 ---------------------------------------
consensus_8153#0 TGATGGTTTGCCGTCAGGCCTATTTGAAATAAATTCCTG 845
consensus_8153#1 TGATG-TTTGC-GTCAG--CTATTC--AATAAT------ 790
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||