cluster # 8162

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Schistosoma mansoni
cluster # 8162 cluster # 8162 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8162#0 length = 765 sequences # 5

consensus_8162#1 length = 64 sequences # 1

consensusID : consensus_8162#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 765
fasta sequence

                              [AGGATTAATGTGGTGAACTGTGATCAAATTTGGATTTATTTTATTTCTAATGCATCTCTCTATAGTCATTCATCACATATTCAATGAAATACTCGATTGACTTTATTCGTATTGGGTGGACAAGGCGTATTTCAGATCACTACTTTAGTTCTGCCTGTACAATATCATTACTAAAAGGACCTAAATTGATTCTTGTTGACCCTGGTAGTCCATGGGATTCGCAATGGCTTCTTTCACAGCTCTCGTCTCGTGGAGTAAATCCTTGTGATATTGATTTTGTTATTTGTACACATGATCACGTCGATCATATTGGAAGCTTACATATCTTCCCAAACTCTACTCGGATTGTGGGAGAGAATCTTGAAGTTCAAGGTCTTAAAGATTGCTTCAGTATCCTCAAAACGCCTTATGAGATCGACTCCTTTATTCACATAATATCTACACCTGGGCACACTTTATCAGACATATCAGTAATTGTGGAGGATATTGATCAATTCGGCCGTGTTGCCATAGTGGGTGACTTGTTTGAATGCGAGCAAGATACTATTGATCCATCTTTGTGGCATTCGTCTAGTAACAA-TATAAGCATACAACAAAAAAGCCGAGAGTTCATTATCGGTAACTTTGACTACATTGTTCCAGGTCATGGACCAGCCTTTAAAGTTACTAAAAAGT-GGCAAAACTAA-TTTT-TATGCATT-TTTACCCT--GTTTATTATAATCTGCTCAACA-TCATTACACCTCTGTTGTCGGGGTTTGGAATAGAATT]

[+] EMBL CD082842             [AGGATTAATGTGGTGAACTGTGATCAAATTTGGATTTATTTTATTTCTAATGCATCTCTCTATAGTCATTCATCACATATTCAATGAAATACTCGATTGACTTTATTCGTATTGGGTGGACAAGGCGTATTTCAGATCACTACTTTAGTTCTGCCTGTACAATATCATTACTAAAAGGACCTAAATTGATTCTTGTTGACCCTGGTAGTCCATGGGATTCGCAATGGCTTCTTTCACAGCTCTCGTCTCGTGGAGTAAATCCTTGTGATATTGATTTTGTTATTTGTACACATGATCACGTCGATCATATTGGAAGCTTACATATCTTCCCAAACTCTACTCGGATTGTGGGAGAGAATCTTGAAGTTCAAGGTCTTAAAGATTGCTTCAGTATCCTCAAAACGCCTTATGAGATCGACTCCTTTATTCACATAATATCTACACCTGGGCACACTTTATCAGACATATCAGTAATTGTGGAGGATATTGATCAATTCGGCCGTGTTGCCATAGTGGGTGACTTGTTTGAATGCGAGCAAGATACTATTGATCCATCTTTGTGGCATTCGTCTAGTAACAANTAT AGCATACCAC ANAAAGCCGAGAGTTCATTATCGGTAACTNTGACTACATTGNTCCAGGTCATGGACCAGCCTTTTAAGTTACTAAAAAGTGGGCAAAACTAA TTNT TATGCATTNNTTACCCTNNGTTTA TAT ATCTGCTCAACA TCATTACA                             ]
[+] EMBL CD152652             [                                                                                 CAATGAAATACTCGATTGACTTTATTCGTATTGGGTGGACAAGGCGTATTTCAGATCACTACTTTAGTTCTGCCTGTACAATATCATTACTAAAAGGACCTAAATTGATTCTTGTTGACCCTGGTAGTCCATGGGATTCGCAATGGCTTCTTTCACAGCTCTCGTCTCGTGGAGTAAATCCTTGTGATATTGATTTTGTTATTTGTACACATGATCACGTCGATCATATTGGAAGCTTACATATCTTCCCAAACTCTACTCGGATTGTGGGAGAGAATCTTGAAGTTCAAGGTCTTAAAGATTGCTTCAGTATCCTCAAAACGCCTTATGAGATCGACTCCTTTATTCACATAATATCTACACCTGNGCACACTTTATCAGACATATCAGTAATTGTGGAGGATATTGATCAATTCGGCCGTGTTGCCATAGTGGGTGACTTG                                                                                                                                                                                                                                                         ]
[-] EMBL CD152893             [                                                                                  AATGAAATACTCGATTGACTTTATTCGTATTGGGTGGACAAGGCGTATTTCAGATCACTACTTTAGTTCTGCCTGTACAATATCATTACTAAAAGGACCTAAATTGATTCTTGTTGACCCTGGTAGTCCATGGGATTCGCAATGGCTTCTTTCACAGCTCTCGTCTCGTGGAGTAAATCCTTGTGATATTGATTTTGTTATTTGTACACATGATCACGTCGATCATATTGGAAGCTTACATATCTTCCCAAACTCTACTCGGATTGTGGGAGAGAATCTTGAAGTTCAAGGTCTTAAAGATTGCTTCAGTATCCTCAAAACGCCTTATGAGATCGACTCCTTTATTCACATAATATCTACACCTGGGCACACTTTATCAGACATATCAGTAATTGTGGAGGATATTGATCAATTCGGCCGTGTTGCCATAGTGGGTGACTTGTTTGAATGCGAGCAAGATACTATTGATCCATCTTTGTGGCATTCGTCTAGTAACAA TATAAGCATACAACAAAAAAGCCGAGAGTTCATTATCGGTAACTTTGACTACATTGTTCCAGCTCATGGACCAGCCTTTAAAGTTACTAAAAAGT GGCAAAACTAA TTTTGTATGCATT TTTACCCT  GTTTATTATAATCTGCTCAACATTCATTACACCTCTGTTGTCGGGGTTTGGAATAGAATT]
[-] EMBL CD076428             [                                                                                                                                                                                                            GTAGTCCATGGGATTCGCAATGGCTTCTTTCACAGCTCTCGTCTCGTGGAGTAAATCCTTGTGATATTGATTTTGTTATTTGTACACATGATCACGTCGATCATATTGGAAGCTTACATATCTTCCCAAACTCTACTCGGATTGTGGGAGAGAATCTTGAAGTTCAAGGTCTTAAAGATTGCTTCAGTATCCTCAAAACGCCTTATGAGATCGACTCCTTTATTCACATAATATCTACACCTGGGCACACTTTATCAGACATATCAGTAATTGTGGAGGATATTGATCAATTCGGCCGTGTTGCCATAGTGGGTGACTTGTTTGAATGCGAGCAAGATACTATTGATCCATCTTTGTGGCATTCGTCTAGTAACAA TATAAGCATACAACAAAAAAGCCGAGAGTTCATTATCGGTAACTTTGACTACATTGTTCCAGGTCATGGACCAGCCTTTAAAGTTACTAAAAAGT GGCAAAACTAATTTTT TATGCATT TTTACCCT  GTTTATTATAATCTGCTCAACA Tt                                   ]
[-] EMBL CD152812             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                        aATCAGACATATCAGTAATTGTGCAGCATATTGATCAATTCGTCCGTGTTGCCATAGTGGGTGACTTGTTTGAATGCGAGCAAGATACTATTGATCCATCTTTGTGGCATTCGTGTAGTAACAA TATAAGCATCCAACAAAAAAGCTGAGAGTTCATTATCGGTAAC TTGAGTACATTGTTCCAGGTCATGGACCAGCCTTTAAAGTTACTAAAAAGT GGCAGAATTAA TTTTGTATGCATT TTTACCCT  GTTTATTATAATCTGATCAACA T                                    ]




>consensus_8162#0
AGGATTAATGTGGTGAACTGTGATCAAATTTGGATTTATTTTATTTCTAATGCATCTCTC
TATAGTCATTCATCACATATTCAATGAAATACTCGATTGACTTTATTCGTATTGGGTGGA
CAAGGCGTATTTCAGATCACTACTTTAGTTCTGCCTGTACAATATCATTACTAAAAGGAC
CTAAATTGATTCTTGTTGACCCTGGTAGTCCATGGGATTCGCAATGGCTTCTTTCACAGC
TCTCGTCTCGTGGAGTAAATCCTTGTGATATTGATTTTGTTATTTGTACACATGATCACG
TCGATCATATTGGAAGCTTACATATCTTCCCAAACTCTACTCGGATTGTGGGAGAGAATC
TTGAAGTTCAAGGTCTTAAAGATTGCTTCAGTATCCTCAAAACGCCTTATGAGATCGACT
CCTTTATTCACATAATATCTACACCTGGGCACACTTTATCAGACATATCAGTAATTGTGG
AGGATATTGATCAATTCGGCCGTGTTGCCATAGTGGGTGACTTGTTTGAATGCGAGCAAG
ATACTATTGATCCATCTTTGTGGCATTCGTCTAGTAACAATATAAGCATACAACAAAAAA
GCCGAGAGTTCATTATCGGTAACTTTGACTACATTGTTCCAGGTCATGGACCAGCCTTTA
AAGTTACTAAAAAGTGGCAAAACTAATTTTTATGCATTTTTACCCTGTTTATTATAATCT
GCTCAACATCATTACACCTCTGTTGTCGGGGTTTGGAATAGAATT

consensusID : consensus_8162#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 64
fasta sequence

                              [NCNACNNTAGATGATCCCCATGACTATAGAGAGATGCATTAGAAATAAAATAAATCCAAATTTG]

[+] EMBL CD166913             [NCNACNNTAGATGATCCCCATGACTATAGAGAGATGCATTAGAAATAAAATAAATCCAAATTTG]




>consensus_8162#1
NCNACNNTAGATGATCCCCATGACTATAGAGAGATGCATTAGAAATAAAATAAATCCAAA
TTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8162#0      AGGATTAATGTGGTGAACTGTGATCAAATTTGGATTTATTTTATTTCTAATGCATCTCTC 60
consensus_8162#1      ----------------------------------NCNACNNTAGATGATCCCCATGACTA 26
                                                           *   **  *      ***  ** 

consensus_8162#0      TATAGTCATTCATCACATATTCAATGAAATACTCGATTGACTTTATTCGTATTGGGTGGA 120
consensus_8162#1      TAGAGAGATGCATTAGAAATAAAAT-AAATCCAAATTTG--------------------- 64
                      ** **  ** *** * * **  *** **** *    ***                     

consensus_8162#0      CAAGGCGTATTTCAGATCACTACTTTAGTTCTGCCTGTACAATATCATTACTAAAAGGAC 180
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      CTAAATTGATTCTTGTTGACCCTGGTAGTCCATGGGATTCGCAATGGCTTCTTTCACAGC 240
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      TCTCGTCTCGTGGAGTAAATCCTTGTGATATTGATTTTGTTATTTGTACACATGATCACG 300
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      TCGATCATATTGGAAGCTTACATATCTTCCCAAACTCTACTCGGATTGTGGGAGAGAATC 360
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      TTGAAGTTCAAGGTCTTAAAGATTGCTTCAGTATCCTCAAAACGCCTTATGAGATCGACT 420
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      CCTTTATTCACATAATATCTACACCTGGGCACACTTTATCAGACATATCAGTAATTGTGG 480
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      AGGATATTGATCAATTCGGCCGTGTTGCCATAGTGGGTGACTTGTTTGAATGCGAGCAAG 540
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      ATACTATTGATCCATCTTTGTGGCATTCGTCTAGTAACAATATAAGCATACAACAAAAAA 600
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      GCCGAGAGTTCATTATCGGTAACTTTGACTACATTGTTCCAGGTCATGGACCAGCCTTTA 660
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      AAGTTACTAAAAAGTGGCAAAACTAATTTTTATGCATTTTTACCCTGTTTATTATAATCT 720
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      GCTCAACATCATTACACCTCTGTTGTCGGGGTTTGGAATAGAATT 765
consensus_8162#1      ---------------------------------------------