These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 858 fasta sequence [AATCTGCTGTTCATGTTGAGGAGTCAGTAAATGGAAGGTTTTCTCGCAGTGATTACCTAGCAGGGTGTCGAATTTTAATGGGTTTGCTAGTTCACGAAGAAGCTGTTCATTTTACTGCATCGGTTTGTCCAGCATGTTCGGTTCCCCTTCTATCTACCAGTCAATCTATGCCCCATTGTCCTGCAGGTCATCTTTATCATCGTCTTGCAGAACTTCGGTTATACTTAGAAGAAGCAGCTTCCACTCCAAATGGCCGTTCAGACACATATTCCAATCCTTATTTTGACAGTAATCAATGTCGTTTCACTTGCCTCAGTGATTGGCTCATAGAGGTAGATAAGTTTTGGTCAGATGCTGCTAAAGAAACTAATATTTGTGGCTCCACTAAGGGATGTCTACAAGCAGCACAACGGCTTCGATCTCTTCTAAACTCACTTGTTCGTGAACATCGACCAGACTGTGAAAATATTTTATCGGGCAAAACAATAGCTAATGACTTGATCAATGAACCACTTAGTAATAATCCATCTGTCGTAGATAATTGTATACCAGAGCCGTATGTATTGGATACATCTCCCGTTCCTTTGAAAAACGAAGTTGGTGAATAATAGTCCAGAAAAAGCATCAGCACTCGTATAACCCGGTTAACTGAGCTAGCAAGCAGTTCAGTATACACTCCCTAGCGTATGTACACTAAATATATTTCATATTGTATTATCCCATTTCTGTATATGTACAAGTATAATTGTTTTTACATATTTCTTACTTTGTTAAGTAAGTTATCTGTAAGCTATTCTTGTTTTGTACACTATACTTGATATTGTATTTTTGTGTTACATAATCTTTTTGTTACTTGAC] [-] EMBL CD154476 [AATCTGCTGTTCATGTTGAGGAGTCAGTAAATGGAAGGTTTTCTCGCAGTGATTACCTAGCAGGGTGTCGAATTTTAATGGGTTTGCTAGTTCACGAAGAAGCTGTTCATTTTACTGCATCGGTTTGTCCAGCATGTTCGGTTCCCCTTCTATCTACCAGTCAATCTATGCCCCATTGTCCTGCAGGTCATCTTTATCATCGTCTTGCAGAACTTCGGTTATACTTAGAAGAAGCAGCTTCCACTCCAAATGGCCGTTCAGACACATATTCCAATCCTTATTTTGACAGTAATCAATGTCGTTTCACTTGCCTCAGTGATTGGCTCATAGAGGTAGATAAGTTTTGGTCAGATGCTGCTAAAGAAACTAATATTTGTGGCTC ] [+] EMBL CD084249 [ gCTCGCAGTGATTACCTAGCAGGGTGTCGAATTTTAATGGGTTTGCTAGTTCACGAAGAAGCTGTTCATTTTACTGCATCGGTTTGTCCAGCATGTTCGGTTCCCCTTCTATCTACCAGTCAATCTATGCCCCATTGTCCTGCAGGTCATCTTTATCATCGTCTTGCAGAACTTCGGTTATACTTAGAAGAAGCAGCTTCCACTCCAAATGGCCGTTCAGACACATATTCCAATCCTTATTTTGACAGTAATCAATGTCGTTTCACTTGCCTCAGTGATTGGCTCATAGAGGTAGATAAGTTTTGGTCAGATGCTGCTAAAGAAACTAATATTTGTGGCTCCACTAAGGGATGTCTACAAGCAGCACAACGGCTTCGATCTCTTCTAAACTCACTTGTTCGTGAACATCGACCAGACTGTGAAAATATTTTATCGGGCAAAACAATAGCTAATGACTTGATCAATGAACCACTTAGTAATAATCCATCTGTCGTAGATAATTGTATACCAGAG ] [-] EMBL BG931609 [ AAGCAGCACAACGGCTTCGATCTCATCTANACTCACTTGTTCGTGAACATCGACCAGACTGTGAAAATATTTTATCGGGCAAAACAATAGCTAATGACTTGATCAATGAACCACTTAGTAATAATCCATCTGTCGTAGATAATTGTATACCAGAGCCGTATGTATTGGATACATCTCCCGTTCCTTTGAAAAACGAAGTTGGTGAATAATAGTCCAGAAAAAGCATCAGCACTCGTATAACCCGGTTAACTGAGCTAGCAAGCAGTTCAGTATACACTCCCTAGCGTATGTACACTAAATATATTTCATATTGTATTATCCCATTTCTGTATATGTACAAGTATAATTGTTTTTACATATTTCTTACTTTGTTAAGTAAGTTATCTGTAAGCTATTCTTGTTTTGTACACTATACTTGATATTGTATTTTTGTGTTACATAATCTTTTTGTTACTTGAC] consensusID : consensus_8163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 730 fasta sequence [TNACCAGCCAGAATTTTGCACGAGGGTCAATCTATGCCCCATTGTCCTGCAGGTCATCTTTATCATCGTCTTGCAGAACTTCGGTTATACTTAGAAGAAGCAGCTTCCACTCCAAATGGCCGTTCAGACACATATTCCAATCCTTATTTTGACAGTAATCAATGTCGTTTCACTTGCCTCAGTGATTGGCTCATAGAGGTAGATAAGTTTTGGTCAGATGCTGCTAAAGAAACTAATGTAAGTACCATTATAAAATAAGAATAAAAACATCAGTAATAGTTTAACAGAACTAATGCTAATTTTTAATATACAAGAGCTTCTGAAGAATTTCCTCAGCATTACAAATTGTTGCAGGTTTTTCAAAATTGTTTAAATCTCCAAGAAATTTCAAGGTTATTAAAATGCTTGTTCGTAATTTGAAGTCATCACATGACCTATTATTATTGAATTTAAGTACTAGTATATGTGCACAAGGTAACTAATGCTAAGGCTGTTCAAGTAACAGTTTTGAGATAGACAATCCCCTTCCCGTCAATTTCCTAACCCTGATCGTTGATTAATAAAAAAGTAAATGAGTACATGGAAACTGAGAAAACTTATACTAGGTGCCATAAATCAAACCAATACACATTCATATGAGAATATACTTCAACTCTGCCTGACTAACTNTGGGGTCTCATTCGTAAATGAGGCCCAGTTAAGCTTGTATAATATATGGAACTAAACCTTG] [+] EMBL CD079568 [TNACCAGCCAGAATTTTGCACGAGGGTCAATCTATGCCCCATTGTCCTGCAGGTCATCTTTATCATCGTCTTGCAGAACTTCGGTTATACTTAGAAGAAGCAGCTTCCACTCCAAATGGCCGTTCAGACACATATTCCAATCCTTATTTTGACAGTAATCAATGTCGTTTCACTTGCCTCAGTGATTGGCTCATAGAGGTAGATAAGTTTTGGTCAGATGCTGCTAAAGAAACTAATGTAAGTACCATTATAAAATAAGAATAAAAACATCAGTAATAGTTTAACAGAACTAATGCTAATTTTTAATATACAAGAGCTTCTGAAGAATTTCCTCAGCATTACAAATTGTTGCAGGTTTTTCAAAATTGTTTAAATCTCCAAGAAATTTCAAGGTTATTAAAATGCTTGTTCGTAATTTGAAGTCATCACATGACCTATTATTATTGAATTTAAGTACTAGTATATGTGCACAAGGTAACTAATGCTAAGGCTGTTCAAGTAACAGTTTTGAGATAGACAATCCCCTTCCCGTCAATTTCCTAACCCTGATCGTTGATTAATAAAAAAGTAAATGAGTACATGGAAACTGAGAAAACTTATACTAGGTGCCATAAATCAAACCAATACACATTCATATGAGAATATACTTCAACTCTGCCTGACTAACTNTGGGGTCTCATTCGTAAATGAGGCCCAGTTAAGCTTGTATAATATATGGAACTAAACCTTG] consensusID : consensus_8163#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [ATCATCTTCTTGAGACAAGTGTCACAAAGTTGAAGAATATTAGCTAAAATGAGTAAATTATATTCATTTATGCTGTCGATCACTATTTTTATTTAGATCACTCCAAAAATAGGTTTGATTTTATTTTTTCATCCATTCAGTTGAATATACGTTTGTTTATTTTAGATTTGTGGCTCCACTAAGGGATGTCTACAAGCAGCACAACGGCTTCGATCTCATCTAAACTCACTTGTTCGTGAACATCGACCAGACTGTGAAAATATTTTATCGGGCAAAACAATAGCTAATGACTTGATCAATGAACCACTTAGTAATAATCCATCTGTCGTAGATAATTGTATACCAGAGCCGTATGTATTGAATACATCTCCCGTTCCTTTGAAAAACGAAGTTGGTGAATAATAGTCCAGAAAAAGCATCAGCACTTGTATAACCCGGTTAACTGAGCTAGCAAGCAGTTCAGTATACACTCCCTAGCGTATGTACACTAAATATATTTCATATTGTATTATCCCATTTCTGTATATGTACAAGTATAATTGTTTTTACATATTTCTTACTTTGTTAAGTAAGTTATCTGTAAGCTATTCTTGTTTTGTACACTATACTTGATATTGTATTTTTGTGTTACATAATCTTTTTGTTACTTGACAACAACACTAAATCTCATTTTCCAAAAT] [-] EMBL CD073833 [ATCATCTTCTTGAGACAAGTGTCACAAAGTTGAAGAATATTAGCTAAAATGAGTAAATTATATTCATTTATGCTGTCGATCACTATTTTTATTTAGATCACTCCAAAAATAGGTTTGATTTTATTTTTTCATCCATTCAGTTGAATATACGTTTGTTTATTTTAGATTTGTGGCTCCACTAAGGGATGTCTACAAGCAGCACAACGGCTTCGATCTCATCTAAACTCACTTGTTCGTGAACATCGACCAGACTGTGAAAATATTTTATCGGGCAAAACAATAGCTAATGACTTGATCAATGAACCACTTAGTAATAATCCATCTGTCGTAGATAATTGTATACCAGAGCCGTATGTATTGAATACATCTCCCGTTCCTTTGAAAAACGAAGTTGGTGAATAATAGTCCAGAAAAAGCATCAGCACTTGTATAACCCGGTTAACTGAGCTAGCAAGCAGTTCAGTATACACTCCCTAGCGTATGTACACTAAATATATTTCATATTGTATTATCCCATTTCTGTATATGTACAAGTATAATTGTTTTTACATATTTCTTACTTTGTTAAGTAAGTTATCTGTAAGCTATTCTTGTTTTGTACACTATACTTGATATTGTATTTTTGTGTTACATAATCTTTTTGTTACTTGACAACAACACTAAATCTCATTTTCCAAAAT] consensusID : consensus_8163#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [GTTTTTAATTGTAGTACTTTATTTCTTAACTGTTCATGTTTCTCATTTGAAAATCACTTTGGTTGTTGATATTGATTAATCAATGTTTAGTCAGATTAGTGTTTTTGTGAATTATCGTTTCACTTTATAGGCAGGGTGTCGAATCTTAATGGGTTTGCTAGTTCACGAAGAAGCTGTTCATTTTACTGCATCGGTTTGTCCAGCATGTTCGGTTCCCCTTCTATCTACCAGTCAATCTATGCCCCATTGTCCTGCAGGTCATCTTTATCATCGTCTTGCAGAACTTCGGTTATACTTAGAAGAAGCAGCTTCCACTCCAAATGGCCGTTCAGACACATATTCCAATCCTTATTTTGACAGTAATCAATGTCGTTTCACTTGCCTCAGTGATTGGCTCATAGAGGTAGATAAGTTTTGGTCAGATGCTGCTAAAGAAACTAATGTAAGTACCATTATAAAATAAGAATAAAAACATCAGTAATAGTTTAACAGAACTAATGCTAATTTTTAATATACAAGAGCTTCTGAAGAATTTCCTCAGCA] [+] EMBL CD152414 [GTTTTTAATTGTAGTACTTTATTTCTTAACTGTTCATGTTTCTCATTTGAAAATCACTTTGGTTGTTGATATTGATTAATCAATGTTTAGTCAGATTAGTGTTTTTGTGAATTATCGTTTCACTTTATAGGCAGGGTGTCGAATCTTAATGGGTTTGCTAGTTCACGAAGAAGCTGTTCATTTTACTGCATCGGTTTGTCCAGCATGTTCGGTTCCCCTTCTATCTACCAGTCAATCTATGCCCCATTGTCCTGCAGGTCATCTTTATCATCGTCTTGCAGAACTTCGGTTATACTTAGAAGAAGCAGCTTCCACTCCAAATGGCCGTTCAGACACATATTCCAATCCTTATTTTGACAGTAATCAATGTCGTTTCACTTGCCTCAGTGATTGGCTCATAGAGGTAGATAAGTTTTGGTCAGATGCTGCTAAAGAAACTAATGTAAGTACCATTATAAAATAAGAATAAAAACATCAGTAATAGTTTAACAGAACTAATGCTAATTTTTAATATACAAGAGCTTCTGAAGAATTTCCTCAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8163#1 ------------------------------------------------------------ consensus_8163#3 GTTTTTAATTGTAGTACTTTATTTCTTAACTGTTCATGTTTCTCATTTGAAAATCACTTT 60 consensus_8163#0 ------------------------------------------------------------ consensus_8163#2 ------------------------------------------------------------ consensus_8163#1 ------------------------------------------------------------ consensus_8163#3 GGTTGTTGATATTGATTAATCAATGTTTAGTCAGATTAGTGTTTTTGTGAATTATCGTTT 120 consensus_8163#0 -----------AATCTGCTGTTCATGTTGAGGAGTCAGTAAATGGAAGGTTTTCTCGCAG 49 consensus_8163#2 ------------------------------------------------------------ consensus_8163#1 ------------------------------------------------------------ consensus_8163#3 CACTTTATAGGCAGGGTGTCGAATCTTAATGGGTTTGCTAGTTCACGAAGAAGCTGTTCA 180 consensus_8163#0 TGATTACCTAGCAGGGTGTCGAATTTTAATGGGTTTGCTAGTTCACGAAGAAGCTGTTCA 109 consensus_8163#2 ------------------------------------------------------------ consensus_8163#1 -------------------------TNACCAGCCAGAATTTTGCACGAGGGTCAATCTAT 35 consensus_8163#3 TTTTACTGCATCGGTTTGTCCAGCATGTTCGGTTCCCCTTCTATCTACCAGTCAATCTAT 240 consensus_8163#0 TTTTACTGCATCGGTTTGTCCAGCATGTTCGGTTCCCCTTCTATCTACCAGTCAATCTAT 169 consensus_8163#2 ------------------------------------------------------------ consensus_8163#1 GCCCCATTGTCCTGCAGGTCATCTTTATCATCGTCTTGCAGAACTTCGGTTATACTTAGA 95 consensus_8163#3 GCCCCATTGTCCTGCAGGTCATCTTTATCATCGTCTTGCAGAACTTCGGTTATACTTAGA 300 consensus_8163#0 GCCCCATTGTCCTGCAGGTCATCTTTATCATCGTCTTGCAGAACTTCGGTTATACTTAGA 229 consensus_8163#2 --------------------------ATCATCTTCTTGAGACA----AGTGTCACAAAGT 30 ****** ***** * ** ** ** consensus_8163#1 AGAAGCAGCTTCCACTCCAAATGGCCGTTCAGACACATATTCCAATCCTTATTTTGACAG 155 consensus_8163#3 AGAAGCAGCTTCCACTCCAAATGGCCGTTCAGACACATATTCCAATCCTTATTTTGACAG 360 consensus_8163#0 AGAAGCAGCTTCCACTCCAAATGGCCGTTCAGACACATATTCCAATCCTTATTTTGACAG 289 consensus_8163#2 TGAAGAA--TATTAGCTAAAATGAGTA-----AATTATATTCA----TTTATGCTGTCGA 79 **** * * * ***** * ****** **** ** * consensus_8163#1 TAATCAATGTCGTTTCACTTGCCTCAGTGATTGGCTCATAGAGGTAGATAAGT---TTTG 212 consensus_8163#3 TAATCAATGTCGTTTCACTTGCCTCAGTGATTGGCTCATAGAGGTAGATAAGT---TTTG 417 consensus_8163#0 TAATCAATGTCGTTTCACTTGCCTCAGTGATTGGCTCATAGAGGTAGATAAGT---TTTG 346 consensus_8163#2 TCACTATTTTTATTTAGATCACTCCAAAAATAGGTTTGATTTTATTTTTTCATCCATTCA 139 * * * * * *** * * ** ** ** * * * * ** consensus_8163#1 GTCAGATGC-TGCTAAAGAAACTAATGTAAGTACCATTA-TAAAATAAGAATAAAAACAT 270 consensus_8163#3 GTCAGATGC-TGCTAAAGAAACTAATGTAAGTACCATTA-TAAAATAAGAATAAAAACAT 475 consensus_8163#0 GTCAGATGC-TGCTAAAGAAACTAATATTTGTGGCTCCACTAAGGGATGTCTACAAGCAG 405 consensus_8163#2 GTTGAATATACGTTTGTTTATTTTAGATTTGTGGCTCCACTAAGGGATGTCTACAAGCAG 199 ** ** * * * * * * ** * * *** * * ** ** ** consensus_8163#1 CAGTAATAGTTT--AACAGAACTAATGCTAATTTTT----AATATACAAGAGCTTCTGAA 324 consensus_8163#3 CAGTAATAGTTT--AACAGAACTAATGCTAATTTTT----AATATACAAGAGCTTCTGAA 529 consensus_8163#0 CA-CAACGGCTTCGATCTCTTCTAAACTCACTTGTTCGTGAACATCGACCAGACTGTGAA 464 consensus_8163#2 CA-CAACGGCTTCGATCTCATCTAAACTCACTTGTTCGTGAACATCGACCAGACTGTGAA 258 ** ** * ** * * **** * ** ** ** ** * ** * **** consensus_8163#1 GA-ATTTCCTCAG-CATTACAAATTGTTGCAGGTTTTTCAA--AATTGTTTAAATCTCCA 380 consensus_8163#3 GA-ATTTCCTCAG-CA-------------------------------------------- 543 consensus_8163#0 AATATTTTATCGGGCAAAACAATAGCTAATGACTTGATCAATGAACCACTTAGTAATAAT 524 consensus_8163#2 AATATTTTATCGGGCAAAACAATAGCTAATGACTTGATCAATGAACCACTTAGTAATAAT 318 * **** ** * ** consensus_8163#1 AGAAATTTCAAGGTTATTAAAATGCTTGTTCGTAAT---TTGAAGTCATCACATGA-CCT 436 consensus_8163#3 ------------------------------------------------------------ consensus_8163#0 CCATCTGTCGTAGATAATTGTATACCAGAGCCGTATGTATTGGATACATCTCCCGTTCCT 584 consensus_8163#2 CCATCTGTCGTAGATAATTGTATACCAGAGCCGTATGTATTGAATACATCTCCCGTTCCT 378 consensus_8163#1 ATTATTATTGAATTTAAGTACTAGTATATGTGCACAAGGTAACTAATGCTAAGGCTGTTC 496 consensus_8163#3 ------------------------------------------------------------ consensus_8163#0 TTGAAAAACGAAGTTGGTGAATAATAGTCCAGAAAAAGC--ATCAGCACTCGTATAACCC 642 consensus_8163#2 TTGAAAAACGAAGTTGGTGAATAATAGTCCAGAAAAAGC--ATCAGCACTTGTATAACCC 436 consensus_8163#1 AAGTAAC--AGTTTTGAGATAGACAATCCCCTTCCCGTCAATTTCCTAACCCTGATCGTT 554 consensus_8163#3 ------------------------------------------------------------ consensus_8163#0 GGTTAACTGAGCTAGCAAGCAGTTCAGTATACACTCCCTAGCGTATGTACACTAAATATA 702 consensus_8163#2 GGTTAACTGAGCTAGCAAGCAGTTCAGTATACACTCCCTAGCGTATGTACACTAAATATA 496 consensus_8163#1 GAT--TAATAAAAAAGTAAATGAGTACATGGAAACTGAGAAAACTTATACTAGGTGCCAT 612 consensus_8163#3 ------------------------------------------------------------ consensus_8163#0 TTTCATATTGTATTATCCCATTTCTGTATATGTACAAGTATAATTGTTTTTACATATTTC 762 consensus_8163#2 TTTCATATTGTATTATCCCATTTCTGTATATGTACAAGTATAATTGTTTTTACATATTTC 556 consensus_8163#1 AAATCAAACCAATACACATTCATATGAGAATATACTTCAACTCTGCCTGACTAACTNTGG 672 consensus_8163#3 ------------------------------------------------------------ consensus_8163#0 TTACTTTGTTAAGTAAGTTATCTGTAAGC-TATTCTTGTTTTGTAC---ACTATACTTGA 818 consensus_8163#2 TTACTTTGTTAAGTAAGTTATCTGTAAGC-TATTCTTGTTTTGTAC---ACTATACTTGA 612 consensus_8163#1 GGTCTCATTCGTAAATGAGGCCCAGTTAAGCTTGTATAATATATGGAACTAAACCTTG-- 730 consensus_8163#3 ------------------------------------------------------------ consensus_8163#0 TATTGTATTTTTGTGTTACATAATCTTTTTGTTACTTGAC-------------------- 858 consensus_8163#2 TATTGTATTTTTGTGTTACATAATCTTTTTGTTACTTGACA-ACAACACTAAATCTCATT 671 consensus_8163#1 --------- consensus_8163#3 --------- consensus_8163#0 --------- consensus_8163#2 TTCCAAAAT 680 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||