cluster # 8164

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Schistosoma mansoni
cluster # 8164 cluster # 8164 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8164#0 length = 514 sequences # 2

consensus_8164#1 length = 434 sequences # 1
consensus_8164#2 length = 427 sequences # 3

consensusID : consensus_8164#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 514
fasta sequence

                              [AAATGAGAGGAATCAACTGTGTGTAACAATTTATTTCATATTAATTGAAATATAAATAAAACTCCATATATATAACTGTGAGTACGTTTGTGTACTTTAATATTAAAAGAAACATATCATATAAATATGAGGGTAATGAGGAGCAAAAGATAATGTGCATGATTATTCAGATTATTTTATGAACATATATATGAACATACAACATAATCTTTGTGATAAGTCTTCTAACTGAACACCAGATTTAGTTCCTAAGCTCTTCTAGTAACCTCCAGGCTAAACCTACATAACAACTTGAACACTAGAGAAAAGGCGCGAAATATAGAAGAAAATGCTTTACTCCAAAATTTCGTTCCTGTACAGTAAATCTAGGGTTTTTATGGTGTTTTAAGTGACCTTGGGTGTCCGGAAAATTCTGGAATGCTAATAAACATAGTGGTAGTATGAGTAATCATCCAATCAGAAACTCAGCATGTGACTTTTCACTTTCTAGATGTTTCTGGGATAACTTCTAGTG]

[+] EMBL CD114965             [AAATGAGAGGAATCAACTGTGTGTAACAATTTATTTCATATTAATTGAAATATAAATAAAACTCCATATATATAACTGTGAGTACGTTTGTGTACTTTAATATTAAAAGAAACATATCATATAAATATGAGGGTAATGAGGAGCAAAAGATAATGTGCATGATTATTCAGATTATTTTATGAACATATATATGAACATACAACATAATCTTTGTGATAAGTCTTCTAACTGAACACCAGATTTAGTTCCTAAGCTCTTCTAGTAACCTCCAGGCTAAACCTACATAACAACTTGAACACTAGAGAAAAGGCGCGAAATATAGAAGAAAATGCTTTACTCCAAAATTTCGTTCCTGTACAGTAAATCTAGGGTTTTTATGGTGTTTTAAGTGACCTTGGGTGTCCGGAAAATTCTGGAATGCTAATAAACATAGTGGTAGTATGAGTAATCATCCAATCAGAAACTCAGCATGTGACTTTTCACTTTCTAGATGTTTCTGGGATAACTTCTAGTG]
[+] EMBL CD114984             [AAATGAGAGGAATCAACTGTGTGTAACAATTTATTTCATATTAATTGAAATATAAATAAAACTCCATATATATAACTGTGAGTACGTTTGTGTACTTTAATATTAAAAGAAACATATCATATAAATATGAGGGTAATGAGGAGCAAAAGATAATGTGCATGATTACTCAGATTATTTTATGAACATATATATGAACATACAACATAATCTTTGTGATAAGTCTTCTAACTGAACACCAGATTTAGTTCCTAAGCTCTTCTAGTAACCTCCAGGCTAAACCTACATAACAACTTGAACACTAGAGAAAAGGCGCGAAATATAGAAGAAAATGCTTTACTCCAAAATTTCGTTCCTGTACAGTAAATCTAGGGTTTTTATGGTGTTTTAAGTGACCTTGGGTGTCCGGAAAATTCTGGAATGCTAATAAACATAGTGGTAGTATGAGTAATCATCCAATCAGAAACTCAGCATG                                          ]




>consensus_8164#0
AAATGAGAGGAATCAACTGTGTGTAACAATTTATTTCATATTAATTGAAATATAAATAAA
ACTCCATATATATAACTGTGAGTACGTTTGTGTACTTTAATATTAAAAGAAACATATCAT
ATAAATATGAGGGTAATGAGGAGCAAAAGATAATGTGCATGATTATTCAGATTATTTTAT
GAACATATATATGAACATACAACATAATCTTTGTGATAAGTCTTCTAACTGAACACCAGA
TTTAGTTCCTAAGCTCTTCTAGTAACCTCCAGGCTAAACCTACATAACAACTTGAACACT
AGAGAAAAGGCGCGAAATATAGAAGAAAATGCTTTACTCCAAAATTTCGTTCCTGTACAG
TAAATCTAGGGTTTTTATGGTGTTTTAAGTGACCTTGGGTGTCCGGAAAATTCTGGAATG
CTAATAAACATAGTGGTAGTATGAGTAATCATCCAATCAGAAACTCAGCATGTGACTTTT
CACTTTCTAGATGTTTCTGGGATAACTTCTAGTG

consensusID : consensus_8164#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [TTGGTAATCCAGAAGTTCATCAATACGTGTTCAGACACAGTGGTAATAACCCAGTTGGTGTTAACATCCTGAAATCCAGACTTGGAATGCGTTTACGAATGTCATCCCTGTGACTTTCTTATTGTACATGATAAGTCGTCTTACTGAACGCTAGATTTGATTCCTAAGCTCTCCTAGTAACCCCCAGGCCAAACTACACAGCAGCCTGAACACGAGAGAAAAGGCACGAGATATGGAAGAAAACGCTTTACTCCAAAGGTTCGTTCCTGTACAAAAAATCTAGGATTTTTATAATATTTTAGATGGCCTTGGGTTTTCGAAAAATTCTGGAATGCTACTAAACATAGTAGTAGTATAAGTAATCGTCCAATCAGAAACTCAGCATGTGACTTTCCACTTTCTAGATGTTTCTGGCAAAACTCTTAGTGAATGGT]

[-] EMBL CD166806             [TTGGTAATCCAGAAGTTCATCAATACGTGTTCAGACACAGTGGTAATAACCCAGTTGGTGTTAACATCCTGAAATCCAGACTTGGAATGCGTTTACGAATGTCATCCCTGTGACTTTCTTATTGTACATGATAAGTCGTCTTACTGAACGCTAGATTTGATTCCTAAGCTCTCCTAGTAACCCCCAGGCCAAACTACACAGCAGCCTGAACACGAGAGAAAAGGCACGAGATATGGAAGAAAACGCTTTACTCCAAAGGTTCGTTCCTGTACAAAAAATCTAGGATTTTTATAATATTTTAGATGGCCTTGGGTTTTCGAAAAATTCTGGAATGCTACTAAACATAGTAGTAGTATAAGTAATCGTCCAATCAGAAACTCAGCATGTGACTTTCCACTTTCTAGATGTTTCTGGCAAAACTCTTAGTGAATGGT]




>consensus_8164#1
TTGGTAATCCAGAAGTTCATCAATACGTGTTCAGACACAGTGGTAATAACCCAGTTGGTG
TTAACATCCTGAAATCCAGACTTGGAATGCGTTTACGAATGTCATCCCTGTGACTTTCTT
ATTGTACATGATAAGTCGTCTTACTGAACGCTAGATTTGATTCCTAAGCTCTCCTAGTAA
CCCCCAGGCCAAACTACACAGCAGCCTGAACACGAGAGAAAAGGCACGAGATATGGAAGA
AAACGCTTTACTCCAAAGGTTCGTTCCTGTACAAAAAATCTAGGATTTTTATAATATTTT
AGATGGCCTTGGGTTTTCGAAAAATTCTGGAATGCTACTAAACATAGTAGTAGTATAAGT
AATCGTCCAATCAGAAACTCAGCATGTGACTTTCCACTTTCTAGATGTTTCTGGCAAAAC
TCTTAGTGAATGGT

consensusID : consensus_8164#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 427
fasta sequence

                              [TTCGAAATAAACATATTTTATTTGATAAAAAACAATAAAATGGAATAAGTTTATGTTACTTCTATTCAACTCATTGTTCTTTTTTACAGATTATTAAAAGAAGCTATTAG-TCCGATTCGTATATTGATAAGTCTCCTAACTGAACGCTACATTTGGGTCCTAAGATCTTCTAGTAACTCCCAGGCTAAATCTACACAGCGACTTGAACACGAGAGAAAAGGAGCGAAATATGGAAGAAAACGCTTTACACCAAAGTTTCGTCTCTGTACAGAAAATCTAGGGTTTTCATAGTATTTTAGATGGCCTTGGGTTTCCTCAAAAATTCTGGAATGTTACTAAACATATTAGTAGTATAAGTAACCATCCAATCAGAAACTCAGCATGTGACTTTCCACTTTCTAGATGTTTCTGGCAAAACTTCTAGTGA]

[+] EMBL CD124110             [TTCGAAATAAACATATTTTATTTGATAAAAAACAATAAAATGGAATAAGCTTATGTTACTTCTATTCTACTCATTGCTCTTTTTTACAGATTATTAAAATAAGCTATTAGCTCCGATTCGTATATTGATAAGTCTCCTAACTGAACGCTACATTTGGATCCTAATATCTTCTAGTAACTCCCAAGCTAAATCTACACAGCGACTTGAACACGATAGAAAAGGAGCGAAATATGGAAGAAAACGCTTTACACCAAAGTTTCGGCTCTGTACAGAGAATCTACGGTTTTCATAGTATTGTAGATGGCCTTGTGTTTCCTCAAAAATTCTGGAATGTTACTAAGCATATTAGTATTATAAGTAACCATCCAATCAGAAACTCACCATGTGACTTTCCACTTTCTATATGCTTCTGGCATAACTTATAGTGA]
[+] EMBL CD124124             [TTCGAAATAAACATATTTTATTTGATAAAAAACAATAAAATGGAATAAGTTTATGTTACTTCTATTCAACTCATTGTTCTTTTTTACAGATTATTAAAAGAAGCTATTAG TCCGATTCGTATATTGATAAGTCTCCTAACTGAACGCTACATTTGGGTCCTAAGATCTTCTAGTAACTCCCAGGCTAAATCTACACAGCGACTTGAACACGAGAGAAAAGGAGCGAAATACGGAAGAAAACGCTTTACACCAAAGTTTCGTCTCTGTACAGAAAATCTAGGGTTTTCATAGTATTTTAGATGGCCTTGGGTTTCCTCAAAAATTCTGGAATGTTACTAAACATATTAGTAGTATAAGTAACCATCCAATCAGAAACTCAGCATGTGACTTTCCACTTTCTAGATGTTTCTGGCAAAACTTCTAGTGA]
[+] EMBL CD124164             [TTCGAAATAAACATATTTTATTTGATAAAAAACAATAAAATGGAATAAGTTTATGTTACTTCTATTCAACTCATTGTTCTTTTTTACAGATTATTAAAAGAAGCTATTAG TCCGATTCGTATATTGATAAGTCTCCTAACTGAACGCTACATTTGGGTCCTAAGATCTTCTAGTAACTCCCAGGCTAAATCTACACAGCGACTTGAACACGAGAGAAAAGGAGCGAAATATGGAAGAAAACGCTTTACACCAAAGTTTCGTCTCTGTACAGAAAATCTAGGGTTTTCATAGTATTTTAGATGGCCTTGGGTTTCCTCAAAAATTCTGGAATGTTACTAAACATATTAGTAGTATAAGTAACCATCCAATCAGAAACTCAGCATGTGACTTTCCACTTTCTAGATGTTTCTGGCAAAACTTCTAGTGA]




>consensus_8164#2
TTCGAAATAAACATATTTTATTTGATAAAAAACAATAAAATGGAATAAGTTTATGTTACT
TCTATTCAACTCATTGTTCTTTTTTACAGATTATTAAAAGAAGCTATTAGTCCGATTCGT
ATATTGATAAGTCTCCTAACTGAACGCTACATTTGGGTCCTAAGATCTTCTAGTAACTCC
CAGGCTAAATCTACACAGCGACTTGAACACGAGAGAAAAGGAGCGAAATATGGAAGAAAA
CGCTTTACACCAAAGTTTCGTCTCTGTACAGAAAATCTAGGGTTTTCATAGTATTTTAGA
TGGCCTTGGGTTTCCTCAAAAATTCTGGAATGTTACTAAACATATTAGTAGTATAAGTAA
CCATCCAATCAGAAACTCAGCATGTGACTTTCCACTTTCTAGATGTTTCTGGCAAAACTT
CTAGTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8164#1      ------------------------------------------------------------
consensus_8164#2      ------------------------------------------------------------
consensus_8164#0      AAATGAGAGGAATCAACTGTGTGTAACAATTTATTTCATATTAATTGAAATATAAATAAA 60
                                                                                  

consensus_8164#1      ---------------TTGGTAATCCAGAAGTTCATCAATACGTGTTCAGACACAGTGGTA 45
consensus_8164#2      ---------------TTCGAAATAAACATATTT-----TATTTGATAAAAAACAATAAAA 40
consensus_8164#0      ACTCCATATATATAACTGTGAGTACGTTTGTGTACTTTAATATTAAAAGAAACATATCAT 120
                                      *   * *       *        *  *    * * ***      

consensus_8164#1      ATAACCCAGTTGGTGTTAACATCCTGAAATCCA---GACTTGGAATGC-GTTTACG--AA 99
consensus_8164#2      TGGAATAAGTTTATGTTACTTCTATTCAACTCAT-TGTTCTTTTTTACAGATTATT--AA 97
consensus_8164#0      ATAAATATGAGGGTAATGAGGAGCAAAAGATAATGTGCATGATTATTCAGATTATTTTAT 180
                         *    *    *  *          *    *   *        * * * ***    * 

consensus_8164#1      TGTCATCCCTGTGACTTTCT----TATTGTACATGATAAGTCGTCTTACTGAACGCTAGA 155
consensus_8164#2      AAGAAGCTAT-TAGTCCGAT----TCGTATAT-TGATAAGTCTCCTAACTGAACGCTACA 151
consensus_8164#0      GAACATATATATGAACATACAACATAATCTTTGTGATAAGTCTTCTAACTGAACACCAGA 240
                          *    * *            *  * *   *********  ** ******* * * *

consensus_8164#1      TTTGATTCCTAAGCTCTCCTAGTAACCCCCAGGCCAAA-CTACACAGCAGCCTGAACACG 214
consensus_8164#2      TTTGGGTCCTAAGATCTTCTAGTAACTCCCAGGCTAAATCTACACAGCGACTTGAACACG 211
consensus_8164#0      TTTAGTTCCTAAGCTCTTCTAGTAACCTCCAGGCTAAACCTACATAACAACTTGAACACT 300
                      ***   ******* *** ********  ****** *** ***** * *  * ******* 

consensus_8164#1      AGAGAAAAGGCACGAGATATGGAAGAAAACGCTTTACTCCAAAGGTTCGTTCCTGTACAA 274
consensus_8164#2      AGAGAAAAGGAGCGAAATATGGAAGAAAACGCTTTACACCAAAGTTTCGTCTCTGTACAG 271
consensus_8164#0      AGAGAAAAGGCGCGAAATATAGAAGAAAATGCTTTACTCCAAAATTTCGTTCCTGTACAG 360
                      **********  *** **** ******** ******* *****  *****  ******* 

consensus_8164#1      AAAATCTAGGATTTTTATAATATTTTAGATGGCCTTGGGTTTTCG-AAAAATTCTGGAAT 333
consensus_8164#2      AAAATCTAGGGTTTTCATAGTATTTTAGATGGCCTTGGGTTTCCTCAAAAATTCTGGAAT 331
consensus_8164#0      TAAATCTAGGGTTTTTATGGTGTTTTAAGTGACCTTGGGTGTCCG-GAAAATTCTGGAAT 419
                       ********* **** **  * *****  ** ******** * *   *************

consensus_8164#1      GCTACTAAACATAGTAGTAGTATAAGTAATCGTCCAATCAGAAACTCAGCATGTGACTTT 393
consensus_8164#2      GTTACTAAACATATTAGTAGTATAAGTAACCATCCAATCAGAAACTCAGCATGTGACTTT 391
consensus_8164#0      GCTAATAAACATAGTGGTAGTATGAGTAATCATCCAATCAGAAACTCAGCATGTGACTTT 479
                      * ** ******** * ******* ***** * ****************************

consensus_8164#1      CCACTTTCTAGATGTTTCTGGCAAAACTCTTAGTGAATGGT 434
consensus_8164#2      CCACTTTCTAGATGTTTCTGGCAAAACTTCTAGTGA----- 427
consensus_8164#0      TCACTTTCTAGATGTTTCTGGGATAACTTCTAGTG------ 514
                       ******************** * ****  *****