These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8167#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 828 fasta sequence [TGGCCAANAATTTGGCACGAGGG-GCGCGACGGCATTTAAAGAGAAAAGTACTGGGTTGAAGTCCTGGAGTGGACATCGACTCTGGAATTCGGGGACATCCAGCTAACGTGTTCCAACTAAGGCGAAACGCGCGTCCTAGATTCCACTGCTGACCACCATCCATCTCTGCTTAAAATGCTTCTGATTTAATGGCAATTTCGAGGCGATCCGCACGAAATGCACATGTGCTGAAAGATACAAATCAGTTGGAGTCCTAAATATCAATCAGAAAATCCAAACAACTAATGTGTGTGAATGGAAATAGTTAATTGGATATATCATTGCTTTTTGATAGTTATCTTTTAATTCACCTGTTACTGCTCAGTAATGATCTGAAAATGTATTTATCTTCTCAATCATCGTTTTAATTTTACCTCTCGCACTAGATAATAAATTAATTGTGTTGAAATACTGTCTATTTTCTTACTTAAGTTCATTGAATCTCATTTACTATTAATTTATTAAAAGCACGTACTGATAGTTATTTATTCAAAAGAAGAAAATTATTTATGTTACTTGACTTTTCTTACTGGCAACTCAT-TGTTGATGTCCTCATTTATTTGATA-TTTCGTTGTTTGTATATGATTTTAGTTGACCTGAAGACAATAATTTCAAAATCTACTTCTGTTNTATTCTTTCCTCACTGATTCTATTGTAATAAATTCTAACTCGATCATAANTGGTTTNTAGTTCAAA-CACTATCATAGT-AAATATAAACACATGT-ATGAAATTTG-TCCA-TTTCTTGTNTG-ATTGGC-TC-ATGNNTAACGG-TGA-TTGT-AATAAAAAAATAGC] [+] EMBL CD080865 [TGGCCAANAATTTGGCACGAGGG GCGCGACGGCATTTAAAGAGAAAAGTACTGGGTTGAAGTCCTGGAGTGGACATCGACTCTGGAATTCGGGGACATCCAGCTAACGTGTTCCAACTAAGGCGAAACGCGCGTCCTAGATTCCACTGCTGACCACCATCCATCTCTGCTTAAAATGCTTCTGATTTAATGGCAATTTCGAGGCGATCCGCACGAAATGCACATGTGCTGAAAGATACAAATCAGTTGGAGTCCTAAATATCAATCAGAAAATCCAAACAACTAATGTGTGTGAATGGAAATAGTTAATTGGATATATCATTGCTTTTTGATAGTTATCTTTTAATTCACCTGTTACTGCTCAGTAATGATCTGAAAATGTATTTATCTTCTCAATCATCGTTTTAATTTTACCTCTCGCACTAGATAATAAATTAATTGTGTTGAAATACTGTCTATTTTCTTACTTAAGTTCATTGAATCTCATTTACTATTAATTTATTAAAAGCACGTACTGATAGTTATTTATTCAAAAGAAGAAAATTATTTATGTTACTTGACTTTTCTTACTGGCAACTCATNTGTTGATGTCCTCATTTATTTGATANTTTCGTTGTTTGTATATGATTTTAGTTGACCTGAAGACAATAATTTCAAAATCTACTTCTGTTNTATTCTTTCCTCACTGATTCTATTGTAATAAATTCTAACTCGATCATAANTGGTTTNTAGTTCAAA CACTATCATAGT AAATATAAACACATGT ATGAAATTTG TCCA TTTCTTGTNTG ATTGGC TC ATGNNTAACGG TGA TTGT AATAAAAA ] [+] EMBL CD080763 [gaGCCAA GATTCGGCACGAGGGCGAGCGACGGCATTTAAAGAGAAAAGTACTGGGTTGAAGTCCTGGAGTGGACATCGACTCTGGAATTCGGGGACATCCAGCTAACGTGTTCCAACTAAGGCGAAACGCGCGTCCTAGATTCCACTGCTGACCACCATCCATCTCTGCTTAAAATGCTTCTGATTTAATGGCAATTTCGAGGCGATCCGCACGAAATGCACATGTGCTGAAAGATACAAATCAGTTGGAGTCCTAAATATCAATCAGAAAATCCAAACAACTAATGTGTGTGAATGGAAATAGTTAATTGGATATATCATTGCTTTTTGATAGTTATCTTTTAATTCACCTGTTACTGCTCAGTAATGATCTGAAAATGTATTTATCTTCTCAATCATCGTTTTAATTTTACCTCTCGCACTAGATAATAAATTAATTGTGTTGAAATACTGTCTATTTTCTTACTTAAGTTCATTGAATCTCATTTACTATTAATTTATTAAAAGCACGTACTGATAGTTATTTATTCAAAAGAAGAAAATTATTTATGTTACTTGACTTTTCTTACTGGCAACTCAT TGTTGATGTCCTCATTTATTTGATA TTTCGTTGTTTGTATATGATTNTAGTTGACCTGAAGACAATAATTTC AAATCTA ] [-] EMBL CD074687 [ TTATCTTCTCAATCATCGTTTTAATTTTCCCTCTCGCACTAGATAATAAATTAATTGTGTTGAAATACTGTCTATTTTCTTACTTAAGTTCATTGAATCTCATTTACTATTAATTTATTAAAAGCACGTACTGATAGTTATTTATTCAAAAAAAGAAAATTATTTATGTTACTTGACTTTTCTTACTGGCAACTCAT TGTTGATGTCCTCATTTATTTGATA TTTCGTTGTTTGTATATGATTTTAGTTGCCCTGAAGCCAATAATTTCAAAATCTACTTCTGTTTTATTCTTTCCCCACTGATTCTATTGTAATAAATTCTAACTCGATCATAATTGGTTT TAGTTCAAACCCCTATCATAGTAAAATATAAACCCATGTAATG AATTTGTTCCATTTTCTTGTTTGTATTGGCTTCAATGTTTACCGGTTGATTTGTAAATAAAAAAATAGC] consensusID : consensus_8167#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence [TACGTGAGTATCAGTTGTCCTTCATCATCAAAACTGCGGTTAAACAGATTTACCTCGTGCTAACGTCAACTTTTGGCTGGCAAGTTACTCATGACGACTAGCGGCCACATTGCAACTTAATCGGTAGAATTTGATCAGCACTTGAANNNNNNGCAAACAAGACAATCATCATTCATCTCTGCTTAAAATGCTTCTGATTTAATGGCAATTTCGAGGCGATCCGCACGAAATGCACATGTGCTGAAAGATACAAATCAGTTGGAGTCCTAAATATCAATCAGAAAATCCAAACAACTAATGTGNNNNNNNNNNNNNNNTTAATTGGATATATCATTGCTTTTTGATAGTTATCTTTTAATTCACCTGTTACTGCTCAGTAATGATCTGAAAATGTATTTATCTTCTCAATCATCGTTTTAATTTTACCTCTCGCACTAGATAATAAATTAATTGTGTTGAAATACTCATTTACTATTAATTTATTAAAAGCACGTACTGATAGTTATTTATTCAAAAGAAGAAAATTATTTATGTTACTTGACTTTTCTTACTGGCAACTCATNGGNTGATGTCCTCATTTATTTGATATTTTCGTTGTTTGTATATGATTTTAGTTGACCTGAAGAACATATTTCAAATCTATCTACTCGATCATATGGGTNTAGTTCANACCTATCTAGTAAATATAACCATGTATGAATTGTCCATTTCTGGNTGATGGGCTCATGTTACGGTGATTGTATAAAAA] [+] EMBL CD080942 [TACGTGAGTATCAGTTGTCCTTCATCATCAAAACTGCGGTTAAACAGATTTACCTCGTGCTAACGTCAACTTTTGGCTGGCAAGTTACTCATGACGACTAGCGGCCACATTGCAACTTAATCGGTAGAATTTGATCAGCACTTGAANNNNNNGCAAACAAGACAATCATCATTCATCTCTGCTTAAAATGCTTCTGATTTAATGGCAATTTCGAGGCGATCCGCACGAAATGCACATGTGCTGAAAGATACAAATCAGTTGGAGTCCTAAATATCAATCAGAAAATCCAAACAACTAATGTGNNNNNNNNNNNNNNNTTAATTGGATATATCATTGCTTTTTGATAGTTATCTTTTAATTCACCTGTTACTGCTCAGTAATGATCTGAAAATGTATTTATCTTCTCAATCATCGTTTTAATTTTACCTCTCGCACTAGATAATAAATTAATTGTGTTGAAATACTCATTTACTATTAATTTATTAAAAGCACGTACTGATAGTTATTTATTCAAAAGAAGAAAATTATTTATGTTACTTGACTTTTCTTACTGGCAACTCATNGGNTGATGTCCTCATTTATTTGATATTTTCGTTGTTTGTATATGATTTTAGTTGACCTGAAGAACATATTTCAAATCTATCTACTCGATCATATGGGTNTAGTTCANACCTATCTAGTAAATATAACCATGTATGAATTGTCCATTTCTGGNTGATGGGCTCATGTTACGGTGATTGTATAAAAA] consensusID : consensus_8167#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [TTACTTAAGTTCATTGAATCTCATTTACTATTAATTTATTAAAAGCCCGTACTGATAGTTATTTATTCAAAAAAAGAAAATTATTTATGTTACTTGACTTTTTTTACGGGCAACTCATGGTTGAGGCCCCCATTTATTTGATATTTCGTGGTTGGAAAATGATTTTAGTTGCCCTGAAGCCAATAATTTCAAAATCTACTTCTGTTTTATTCTTTCCCCCCTGATTCTATGGTAATAAATTCTAACTCGATCATAATGGGTTTTAGTTCAAACCCCTATCATAGTAAAATATAACCCCATGTAATGAATTGGTCCCATTTTCTGGTTGGTATGGGCTCCAATGTTTACCGGTTGATTTGTAAATAAAAAAATAGC] [-] EMBL CD074776 [TTACTTAAGTTCATTGAATCTCATTTACTATTAATTTATTAAAAGCCCGTACTGATAGTTATTTATTCAAAAAAAGAAAATTATTTATGTTACTTGACTTTTTTTACGGGCAACTCATGGTTGAGGCCCCCATTTATTTGATATTTCGTGGTTGGAAAATGATTTTAGTTGCCCTGAAGCCAATAATTTCAAAATCTACTTCTGTTTTATTCTTTCCCCCCTGATTCTATGGTAATAAATTCTAACTCGATCATAATGGGTTTTAGTTCAAACCCCTATCATAGTAAAATATAACCCCATGTAATGAATTGGTCCCATTTTCTGGTTGGTATGGGCTCCAATGTTTACCGGTTGATTTGTAAATAAAAAAATAGC] consensusID : consensus_8167#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [TTCCTAGGAATCTATTGACTATACGTGAGTATACAGTTGTCCTTCATCATCAAAACTGCGGTTAAACAGATTTACCTCGTGCTAACGTCAACTTTTGGCTGGCAAGTTACTCATGACGACTAGCGGCCACATTGCAACTTAATCGGTAGAATTTGATCAGCACTTGAAGACTTGGCAAACAAGACAATCATCATTCAGCTCTAGTCAGAGATGGATTGTGGCTAGCACTGGGATTCAGAATGCACCTTTTGTCTCATTTGGGACTCGTCAGCTGGATCACTATGGGGAGCGACGGCATTTAAAGAGAAAAGTACTGGGTTGAAGTCCTGGAGTGGA] [+] EMBL BG931934 [TTCCTAGGAATCTATTGACTATACGTGAGTATACAGTTGTCCTTCATCATCAAAACTGCGGTTAAACAGATTTACCTCGTGCTAACGTCAACTTTTGGCTGGCAAGTTACTCATGACGACTAGCGGCCACATTGCAACTTAATCGGTAGAATTTGATCAGCACTTGAAGACTTGGCAAACAAGACAATCATCATTCAGCTCTAGTCAGAGATGGATTGTGGCTAGCACTGGGATTCAGAATGCACCTTTTGTCTCATTTGGGACTCGTCAGCTGGATCACTATGGGGAGCGACGGCATTTAAAGAGAAAAGTACTGGGTTGAAGTCCTGGAGTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8167#0 ----TGGCCAANAATTTGGCACGAGGGGCGCGACGGCATTTAAAGAGAAAAGTACTGGGT 56 consensus_8167#2 ------------------------------------------------------------ consensus_8167#1 TACGTGAGTATCAGTTGTCCTTCATCATCAAAACTGCGGTTAAACAGATTTACCTCGTGC 60 consensus_8167#3 ------------------------------------------------------------ consensus_8167#0 TGAAGTC----CTGGAGTGGACATCGACTCTGGA--ATTCGGGGACA---TCCAGCTAAC 107 consensus_8167#2 ------------------------------------------------------------ consensus_8167#1 TAACGTCAACTTTTGGCTGGCAAGTTACTCATGACGACTAGCGGCCACATTGCAACTTAA 120 consensus_8167#3 ------------------------------------------------------------ consensus_8167#0 GTGTTCCAACTAAGGCGAAACGCGCGTCCTAGATTCCACTGCTGACCACCATCCATCTCT 167 consensus_8167#2 ------------------------------------------------------------ consensus_8167#1 TCGGTAGAATTTGATCAGCACTTGAANNNNNNGCAAACAAGACAATCATCATTCATCTCT 180 consensus_8167#3 ------------------------------------------------------------ consensus_8167#0 GCTTAAAATGCTTCTGATTTAATGGCAATTTCGAGGCGATCCGCACGAAATGCACATGTG 227 consensus_8167#2 ------------------------------------------------------------ consensus_8167#1 GCTTAAAATGCTTCTGATTTAATGGCAATTTCGAGGCGATCCGCACGAAATGCACATGTG 240 consensus_8167#3 ------------------------------------------------------------ consensus_8167#0 CTGAAAGATACAAATCAGTTGGAGTCCTAAATATCAATCAGAAAATCCAAACAACTAATG 287 consensus_8167#2 ------------------------------------------------------------ consensus_8167#1 CTGAAAGATACAAATCAGTTGGAGTCCTAAATATCAATCAGAAAATCCAAACAACTAATG 300 consensus_8167#3 ------------------------------------------------------------ consensus_8167#0 TGTGTGAATGGAAATAGTTAATTGGATATATCATTGCTTTTTGATAGTTATCTTTTAATT 347 consensus_8167#2 ------------------------------------------------------------ consensus_8167#1 TGNNNNNNNNNNNNNNNTTAATTGGATATATCATTGCTTTTTGATAGTTATCTTTTAATT 360 consensus_8167#3 ------------------------------------------------------------ consensus_8167#0 CACCTGTTACTGCTCAGTAATGATCTGAAAATGTATTTATCTTCTCAATCATCGTTTTAA 407 consensus_8167#2 ------------------------------------------------------------ consensus_8167#1 CACCTGTTACTGCTCAGTAATGATCTGAAAATGTATTTATCTTCTCAATCATCGTTTTAA 420 consensus_8167#3 ------------------------------------------------------------ consensus_8167#0 TTTTACCTCTCGCACTAGATAATAAATTAATTGTGTTGAAATACTGTCTATTTTCTTACT 467 consensus_8167#2 -------------------------------------------------------TTACT 5 consensus_8167#1 TTTTACCTCTCGCACTAGATAATAAA-----------------------------TTAAT 451 consensus_8167#3 ------------------------------------------------------------ consensus_8167#0 TAAGTTCATTGAATCTCATTTACTATTAATTTATTAAAAGCACGTACTGATAGTTATTTA 527 consensus_8167#2 TAAGTTCATTGAATCTCATTTACTATTAATTTATTAAAAGCCCGTACTGATAGTTATTTA 65 consensus_8167#1 TGTGTTGA--AATACTCATTTACTATTAATTTATTAAAAGCACGTACTGATAGTTATTTA 509 consensus_8167#3 ----TTCCTAGGAATCTATTGACTATACGTGAGTATACAGTTGTCCTTCATCATCAAAAC 56 ** *** ***** * * * ** * ** * * consensus_8167#0 TTCAAAAGAAGAAAATTATTT-ATGTTACTTGACTTTTCTTACTGGCAACTCATTG-TTG 585 consensus_8167#2 TTCAAAAAAAGAAAATTATTT-ATGTTACTTGACTTTTTTTACGGGCAACTCATGG-TTG 123 consensus_8167#1 TTCAAAAGAAGAAAATTATTT-ATGTTACTTGACTTTTCTTACTGGCAACTCATNGGNTG 568 consensus_8167#3 TGCGGTTAAACAGATTTACCTCGTGCTAACGTCAACTTTTGGCTGGCAAGTTACTCATGA 116 * * ** * * *** * ** ** ** * * ***** * * consensus_8167#0 ATGTCCTCATTTATTTGATATTT-CGTTGTTTGTATATGATT----TTAGTTGACCTGA- 639 consensus_8167#2 AGGCCCCCATTTATTTGATATTT-CGTGGTTGGAAAATGATT----TTAGTTGCCCTGA- 177 consensus_8167#1 ATGTCCTCATTTATTTGATATTTTCGTTGTTTGTATATGATT----TTAGTTGACCTGA- 623 consensus_8167#3 CGACTAGCGGCCACATTGCAACTTAATCGGTAGAATTTGATCAGCACTTGAAGACTTGGC 176 * * * * * * * * * * **** * * * * ** consensus_8167#0 AGACAATAATTTCAAAATCTACTTCTGTTNTATTCTT--TCCTCACTGATTCTATTGTAA 697 consensus_8167#2 AGCCAATAATTTCAAAATCTACTTCTGTTTTATTCTT--TCCCCCCTGATTCTATGGTAA 235 consensus_8167#1 AG--AACATATTTCAAATCTATCT------------------------------------ 645 consensus_8167#3 AAACAAGACAATCATCATTCAGCTCTAGTCAGAGATGGATTGTGGCTAGCACTGGGATTC 236 * ** * * ** * * consensus_8167#0 TAAATTCTAACTCGATCATAANTGGTTTNTAGTTCAAACAC-TATCATAGTAAA-TATAA 755 consensus_8167#2 TAAATTCTAACTCGATCATAATGGGTTTT-AGTTCAAACCCCTATCATAGTAAAATATAA 294 consensus_8167#1 ---------ACTCGATCATA-TGGGTNT--AGTTCANACC--TATC-TAGTAAA-TATAA 689 consensus_8167#3 AGAATGCACCTTTTGTCTCATTTGGGACT--CGTCAGCTGG--ATCACTATGGGGAGCGA 292 * ** * ** *** *** * * consensus_8167#0 ACACATGTATGAAATTTGTCC-ATTTCTTGTNTG--ATTGGCTC--ATGNNTAACGGTGA 810 consensus_8167#2 CCCCATGTAATGAATTGGTCCCATTTTCTGGTTGGTATGGGCTCCAATGTTTACCGGTTG 354 consensus_8167#1 CC--ATGTATGAA--TTGTCC--ATTTCTGGNTG--ATGGGCTC--ATGTT--ACGGTGA 737 consensus_8167#3 CGGCATTTAAAGA-----GAAAAGTACTGGGTTG--AAGTCCTGGAGTGGA--------- 336 ** ** * * * ** * ** ** consensus_8167#0 --TTGTAA-TAAAAAAATAGC 828 consensus_8167#2 ATTTGTAAATAAAAAAATAGC 375 consensus_8167#1 --TTGTA--TAAAAA------ 748 consensus_8167#3 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||