These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 749 fasta sequence [AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAAGGTGAAATACATCATGCTAATATTTCAGTCGAACGTAAGCAAGGGAACATTGATATATTAAATAAGAAACTGGAACGTTTAATTCATGACTGCGGTGTAAGTAATTGACTGTGAAATTAAATTATATTTTTTACCAACTGAAATAACTTTTTTTTGTAGTTTTGAATGACATACACTTTTATCTTAACTCTGTAGTCTAATGCAAATGATCTAATATAGGGTTTTTAATTATTTACATATTTGGTAAGTTTTGTTTTATTATAGGTAAATTAATTACTTAGTTATTGTTAATAGAATCATATATATCCTCGAATCCTTACCATACTGATGAATATTATTTTTAGAAAGTTTTTCCTCCGTAAAGTGTTCATTATTTATATTACAGTTTTTGAGGGGGTTAGCAAAGATGTTTAATTAAGTTTTTACATGGAAAGCACTGTGATAAACAACAAGGATGTTAGTGAATGATTAATAACTAGTAACGTTTCATAGTTCGAAATAATAAGTGATCGTATGGCACAATATCAGCCACTAAATATTTAGAACCTAGTTTGAGATGAAGTTGAATAATAG-AAGCTTTGCAGCTACTAGATCAAAGCGAAAACCTGTTCATGAGTAGAACAAA-CCTCACTCGGTAACTAA-TTCCATCTTCATCTATCGTCTACTCAAAGTCATATTGTACGGAGATA] [+] EMBL CD085082 [AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAAGGTGAAATACATCATGCTAATATTTCAGTCGAACGTAAGCAAGGGAACATTGATATATTAAATAAGAAACTGGAACATTTAATTCATGACTGCGGTGTAAGTAATTGACTGTGAAATTAAATTATATTTTTTACCAACTGAAATAACTCTTTTTTGTAGTTTTGAATGACATACACTTTTATCTTAACTCTGTAGTCTAATGCAAATGATCTAATATAGGGTTTTTAATTATTTACATATTTGGTAAGTTTTGTTTTATTATAGGTAAATTAATTACTTAGTTATTGTTAATAGAATCATATATATCCTCGAATCCTTACCATACTGATGAATATTATTTTTAGAAAGTTTTTCCTCCGTAAAGTGTTCATTATTTATATTACAGTTTTTGAGGGGGTTAGCAAAGATGTTTAATTAAGTTTTTACATGGAAAGCACTGTGATAAACAACAAGGATGTTAGTGAATGATTAATAACTAGTAACGTTTCATAGTTCGAAATAATAAGTGATCGTATGGCACAATATCAGCCACTANATATTTAGAACCTAGNTTGAGATGAAGTTGAATAATAGAAAGC TTGCAGCTACTAGATCAAAGCGAAAACCTGTTCATGAGTAGAACAAACCCTCACTCGG NACTAANTNNCATC TCATCTATCGNCTACTCAAAGNCATATTGNACGGAGAT ] [+] EMBL CD085350 [AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAAGGTGAAATACATCATGCTAATATTTCAGTCGAACGTAAGCAAGGGAACATTGATATATTAAATAAGAAACTGAAACGTTTAATTCATGACTGCGGTGTAAGTAATTGACTGTGAAATTAAATTATATTTTTTACCAACTGAAATAACTTTTTTTTGTAGTTTTGAATGACATACACTTTTATCTTAACTCTGTAGTCTAATGCAAATGATCTAATATAGGGTTTTTAATTATTTACATATTTGGTAAGTTTTGTTTTATTATAGGTAAATTAATTACTTAGTTATTGTTAATAGAATCATATATATCCTCGAATCCTTACCATACTGATGAATATTATTTTTAGAAAGTTTTTCCTCCGTAAAGTGTTCATTATTTATATTACAGTTTTTGAGGGGGTTAGCANAGATGTTTAATTAAGTTTTTACATGGAAAGCACTGTGATAAACAACAAGGATGTTAGTGAATGATTAATAACTAGTAACGTTTCATAGTTCGAAATAATAAGTGATCGTATGGCACAATATAAGCCACTA ] [+] EMBL CD085299 [AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAAGGTGAAATACATCATGCTAATATTTCAGTCGAACGTAAGCAAGGGAACATTGATATATTAAATAGGAAACTGGAACGTTTAATTCATGACTGCGGTGTAAGTAATTGTCTGTGAAATTAAATTATATTTTTTACCAACTGAAATAACTTTTTTTTGTAGTTTTGAATGACATACACTTTTATCTTAACTCTGTAGTCTAATGCAAATGATCTAATATAGGGTTTTTAATTATTTACATATTTGGTAGGGTTTGTTTTATTATAGGTAAATTAATTACTTAGTTATTGTTAATAGAATCATATATATCCTCGAATCCTTACCATACTGATGAA ] [-] EMBL CD085207 [ TCATGACTGCGGTGTAAGTAATTGACTGTGAAATTAAATTATATTTTTTAGCAACTGAAATAACTTTTTTTTGTAGTTTTGAATGACATACACTTTTATCTTAACTCTGTAGTCT ATGCAAATGATCTAATATAGGGTTTTTAATTATTTACATATTTGGTAAGTTTTGTTTTATTATAGGTAAATTAATTACTTAGTTATTGTTAATAGAATCATATATATCCTCGAATCCTTACCATACTGATGAATATTATTTTTAGAAAGTTTATCCTCCGTAAAGTGTTCATTATTTATATTACAGTTTTTGAGGGGGTTAGCAAAGATGTTTAATTAAGTTTTTACATGGAAAGCACTGTGATAATCAACAAGGATGTTAGTGAATGATTAATAACTAGTAACGTTTCATAGTTCGAAATAATAAGTGATCGTATGGCACAATATAAGCCACTAAATATTTAGAACCTAGTTTGAGATGAAGTTGAATAATAG AAGCTTTGCAGCTACTAGATCAAAGCGAAAACCTGTTCATGAGTAGAACAAA CCTCACTCGGTAACTAA TTCCATCTTCATCTATCGTCTACTCAAAGTCATATTGTACGGAGATA] [-] EMBL CD085173 [ aacTTTTTGTAGTTNTGAATGGCATACACTTTTATCTTAACTCTGTAGTCTAATGCAAATGATCTAATATAGGGTTTTTAATTATTTACATATTTGGTAAGTTTTGTTTTATTATAGGTAAATTAATTACTTAGTTATTGTTAATAGAATCATATATATCCTCGAATCCTTACCATACTGATGAATATTATTTTTAGAAAGTTTTTCCTCCGTAAAGTGTTCATTATTTATATTACAGTTTTTGAGGGGGTTAGCAAAGATGTTTAATTAAGTTTTTACATGGAAAGCACTGTGATAAACAACAAGGATGTTAGTGAATGATTAATAACTAGTAACGTTTCATAGTTCGAAATAATAAGTGATCGTATGGCACAATATCAGCCACTAAATATTTAGAACCTAGTTTGAGATGAAGTTGAATAATAG AAGCTTTGCAGCTACTAGATCAAAGCGAAAACCTGTTCATGAGTAGAACAAA CCTCACTCGGTAACTAA TTCCATCTTCATCTATCGTCTACTCAAAGTCATATTGTACGGAGATA] consensusID : consensus_8173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence [AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAAGGTGAAATACATCAGGCTAATATTGCAGGGCGAACGTAAGCAAGGGAACATTGATTTATAAAAAAAAAAGGTGGAACGTTTAAATCTATTGAGGGGGGTGNAAGTATTGAGTGTGGAAAAATAAATTATTTTTT] [+] EMBL CD085058 [AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAAGGTGAAATACATCAGGCTAATATTGCAGGGCGAACGTAAGCAAGGGAACATTGATTTATAAAAAAAAAAGGTGGAACGTTTAAATCTATTGAGGGGGGTGNAAGTATTGAGTGTGGAAAAATAAATTATTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8173#0 AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAA 60 consensus_8173#1 AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAA 60 ************************************************************ consensus_8173#0 GGTGAAATACATCATGCTAATATTTCAGT-CGAACGTAAGCAAGGGAACATTGATATATT 119 consensus_8173#1 GGTGAAATACATCAGGCTAATATTGCAGGGCGAACGTAAGCAAGGGAACATTGATTTATA 120 ************** ********* *** ************************* *** consensus_8173#0 AAATAAGAAACTGGAACGTTTAATTCA--TGACTGCGGTGTAAGTAATTGACTGTG--AA 175 consensus_8173#1 AAAAAAAAAGGTGGAACGTTTAAATCTATTGAGGGGGGTGNAAGTA-TTGAGTGTGGAAA 179 *** ** ** ************ ** *** * **** ***** **** **** ** consensus_8173#0 ATTAAATTATATTTTTTACCAACTGAAATAACTTTTTTTTGTAGTTTTGAATGACATACA 235 consensus_8173#1 AATAAATTATTTTTT--------------------------------------------- 194 * ******** **** consensus_8173#0 CTTTTATCTTAACTCTGTAGTCTAATGCAAATGATCTAATATAGGGTTTTTAATTATTTA 295 consensus_8173#1 ------------------------------------------------------------ consensus_8173#0 CATATTTGGTAAGTTTTGTTTTATTATAGGTAAATTAATTACTTAGTTATTGTTAATAGA 355 consensus_8173#1 ------------------------------------------------------------ consensus_8173#0 ATCATATATATCCTCGAATCCTTACCATACTGATGAATATTATTTTTAGAAAGTTTTTCC 415 consensus_8173#1 ------------------------------------------------------------ consensus_8173#0 TCCGTAAAGTGTTCATTATTTATATTACAGTTTTTGAGGGGGTTAGCAAAGATGTTTAAT 475 consensus_8173#1 ------------------------------------------------------------ consensus_8173#0 TAAGTTTTTACATGGAAAGCACTGTGATAAACAACAAGGATGTTAGTGAATGATTAATAA 535 consensus_8173#1 ------------------------------------------------------------ consensus_8173#0 CTAGTAACGTTTCATAGTTCGAAATAATAAGTGATCGTATGGCACAATATCAGCCACTAA 595 consensus_8173#1 ------------------------------------------------------------ consensus_8173#0 ATATTTAGAACCTAGTTTGAGATGAAGTTGAATAATAGAAGCTTTGCAGCTACTAGATCA 655 consensus_8173#1 ------------------------------------------------------------ consensus_8173#0 AAGCGAAAACCTGTTCATGAGTAGAACAAACCTCACTCGGTAACTAATTCCATCTTCATC 715 consensus_8173#1 ------------------------------------------------------------ consensus_8173#0 TATCGTCTACTCAAAGTCATATTGTACGGAGATA 749 consensus_8173#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||