cluster # 8175

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Schistosoma mansoni
cluster # 8175 cluster # 8175 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8175#0 length = 796 sequences # 5

consensus_8175#1 length = 208 sequences # 1

consensusID : consensus_8175#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 796
fasta sequence

                              [ACTCGTCCATACCGAATGTTAGATACTGCTGATGAACCTGTTTCGACTGTGAATAGTTCTCCCAAAAATATGGACAAACTAAAATTACTATCTAGAAACTATGAAACCTCTTCGTCTTCAGATATTTCATCTGACAGTGAACCTGAATTAATTGAAAAACCTGTAATCCAGAAACCTAAGGATCCAGCCTTTTTAATTCCACCCGACTATATCTTACAGTCAGTGAAAGACTTGACTGCAGATATAAAGGTTTCGTTACTCGGGAAAATCTCTCAAGTTTTTGATAAATACGTTGTCATCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACGGCAAGCATTTGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAATCTCAGGTCCACACAATTGTACACTTTCAAAATCAACGAATTATTCTGAAAGTTTAGAACCTCAAACACCAAGTGAATCAGTTACTAATACTCAACTTGATAATTACAATTCACCTAATGATAGCAACAGTCAGAATCGTAGTGAAATTGAAATATCAATTACTGACAACAGTAATGCTATCAATTATGAAGAAAAAAGAAAGGTTAATTCTTCATTGAAAGAAGTATCCGTGTTTTATGCACCCGATATGCCTGAACTCACTATTCCTGTCTTTTACAACCAATTAATTGCTAGTAACATCAAAGGATCAGATGCATCTTGGGTAGGCG]

[+] EMBL CD112075             [ACTCGTCCATACCGAATGTTAGATACTGCTGATGAACCTGTTTCGACTGTGAATAGTTCTCCCAAAAATATGGACAAACTAAAATTACTATCTAGAAACTATGAAACCTCTTCGTCTTCAGATATTTCATCTGACAGTGAACCTGAATTAATTGAAAAACCTGTAATCCAGAAACCTAAGGATCCAGCCTTTTTAATTCCACCCGACTATATCTTACAGTCAGTGAAAGACTTGACTGCAGATATAAAGGTTTCGTTACTCGGGAAAATCTCTCAAGTTTTTGATAAATACGTTGTCATCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACGGCAAGCATATGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAATC                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD112121             [ACTCGTCCATACCGAATGTTAGATACTGCTGATGAACCTGTTTCGACTGTGAATAGTTCTCCCAAAAATATGGACAAACTAAAATTACTATCTAGAAACTATGAAACCTCTTCGTCTTCAGATATTTCATCTGACAGTGAACCTGAATTAATTGAAAAACCTGTAATCCAGAAACCTAAGGATCCAGCCTTTTTAATTCCACCCGACTATATCTTACAGTCAGTGAAAGACTTGACTGCAGATATAAAGGTTTCGTTACTCGGGAAAATCTCTCAAGTTTTTGATAAATACGTTGTCATCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACGGCAAGCATTTGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAAT                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD112189             [                              GATGAACCTGTTTCGACTGTGAATAGTTCTCCCAAAAATATGGACAAACTAAAATTACTATCTAGAAACTATGAAACCTCTTCGTCTTCAGATATTTCATCTGACAGTGAACCTGAATTAATTGAAAAACCTGTAATCCAGAAACCTAAGGATCCAGCCTTTTTAATTCCACCCGACTATATCTTACAGTCAGTGAAAGACTTGACTGCAGATATAAAGGTTTCGTTACTCGGGAAAATCTCTCAAGTTTTTGATAAATACGTTGTCATCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACGGCAAGCATTTGGGTGAGGTTTATGAGACATTTGGCTCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAATC                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD112077             [                                                                        GACAAAGTAAAATTACTATCTAGAAACTATGAAACCTCTTCGTCTTCAGATATTTCATCTGACAGTGAACCTGAATTAATTGAAAAACCTGTAATCCAGAAACCTAAGGATCCAGCCTTTTTAATTCCACCCGACTATATCTTACAGTCAGTGAAAGACTTGACTGCAGATATAAAGGTTTCGTTACTCGGGAAAATCTCTCAAGTTTTTGATAAATACGTTGTCATCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACGGCAAGCATTTGGGTGAGGTTTATGAGACATTTGGCTCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAATC                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD160320             [                                                                                                                                                                                                                                                                                                                                                                           CATTTGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAATCTCAGGTCCACACAATTGTACACTTTCAAAATCAACGAATTATTCTGAAAGTTTAGAACCTCAAACACCAAGTGAATCAGTTACTAATACTCAACTTGATAATTACAATTCACCTAATGATAGCAACAGTCAGAATCGTAGTGAAATTGAAATATCAATTACTGACAACAGTAATGCTATCAATTATGAAGAAAAAAGAAAGGTTAATTCTTCATTGAAAGAAGTATCCGTGTTTTATGCACCCGATATGCCTGAACTCACTATTCCTGTCTTTTACAACCAATTAATTGCTAGTAACATCAAAGGATCAGATGCATCTTGGGTAGGCG]




>consensus_8175#0
ACTCGTCCATACCGAATGTTAGATACTGCTGATGAACCTGTTTCGACTGTGAATAGTTCT
CCCAAAAATATGGACAAACTAAAATTACTATCTAGAAACTATGAAACCTCTTCGTCTTCA
GATATTTCATCTGACAGTGAACCTGAATTAATTGAAAAACCTGTAATCCAGAAACCTAAG
GATCCAGCCTTTTTAATTCCACCCGACTATATCTTACAGTCAGTGAAAGACTTGACTGCA
GATATAAAGGTTTCGTTACTCGGGAAAATCTCTCAAGTTTTTGATAAATACGTTGTCATC
CGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACGGC
AAGCATTTGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGGTG
ATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAATCTCAGGTCCACAC
AATTGTACACTTTCAAAATCAACGAATTATTCTGAAAGTTTAGAACCTCAAACACCAAGT
GAATCAGTTACTAATACTCAACTTGATAATTACAATTCACCTAATGATAGCAACAGTCAG
AATCGTAGTGAAATTGAAATATCAATTACTGACAACAGTAATGCTATCAATTATGAAGAA
AAAAGAAAGGTTAATTCTTCATTGAAAGAAGTATCCGTGTTTTATGCACCCGATATGCCT
GAACTCACTATTCCTGTCTTTTACAACCAATTAATTGCTAGTAACATCAAAGGATCAGAT
GCATCTTGGGTAGGCG

consensusID : consensus_8175#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 208
fasta sequence

                              [ACTCGTCCATACCGAATGTTAGATACTGCTGATTTGTCATCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACGGCAAGCATTTGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAAT]

[+] EMBL CD112589             [ACTCGTCCATACCGAATGTTAGATACTGCTGATTTGTCATCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACGGCAAGCATTTGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAAT]




>consensus_8175#1
ACTCGTCCATACCGAATGTTAGATACTGCTGATTTGTCATCCGTTCCATTAATTCAGCAG
TTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACGGCAAGCATTTGGGTGAGGTTT
ATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTT
GTGTACCCAAGTTAAGAAATGATCGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8175#0      ACTCGTCCATACCGAATGTTAGATACTGCTGATGAACCTGTTTCGACTGTGAATAGTTCT 60
consensus_8175#1      ------------------------------------------------------------
                                                                                  

consensus_8175#0      CCCAAAAATATGGACAAACTAAAATTACTATCTAGAAACTATGAAACCTCTTCGTCTTCA 120
consensus_8175#1      ------------------------------------------------------------
                                                                                  

consensus_8175#0      GATATTTCATCTGACAGTGAACCTGAATTAATTGAAAAACCTGTAATCCAGAAACCTAAG 180
consensus_8175#1      ------------------------------------------------------------
                                                                                  

consensus_8175#0      GATCCAGCCTTTTTAATTCCACCCGACTATATCTTACAGTCAGTGAAAGACTTGACTGCA 240
consensus_8175#1      ------------------------------------------------------------
                                                                                  

consensus_8175#0      GATATAAAGGTTTCGTTACTCGGGAAAATCTCTCAAGTTTTTGATA--AATACGTTGTCA 298
consensus_8175#1      -----------------ACTCGTCCATAC----CGAATGTTAGATACTGCTGATTTGTCA 39
                                       *****   * *     * * * ** ****    *   ******

consensus_8175#0      TCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACG 358
consensus_8175#1      TCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACG 99
                      ************************************************************

consensus_8175#0      GCAAGCATTTGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGG 418
consensus_8175#1      GCAAGCATTTGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGG 159
                      ************************************************************

consensus_8175#0      TGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAATCTCAGGTCCAC 478
consensus_8175#1      TGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAAT----------- 208
                      *************************************************           

consensus_8175#0      ACAATTGTACACTTTCAAAATCAACGAATTATTCTGAAAGTTTAGAACCTCAAACACCAA 538
consensus_8175#1      ------------------------------------------------------------
                                                                                  

consensus_8175#0      GTGAATCAGTTACTAATACTCAACTTGATAATTACAATTCACCTAATGATAGCAACAGTC 598
consensus_8175#1      ------------------------------------------------------------
                                                                                  

consensus_8175#0      AGAATCGTAGTGAAATTGAAATATCAATTACTGACAACAGTAATGCTATCAATTATGAAG 658
consensus_8175#1      ------------------------------------------------------------
                                                                                  

consensus_8175#0      AAAAAAGAAAGGTTAATTCTTCATTGAAAGAAGTATCCGTGTTTTATGCACCCGATATGC 718
consensus_8175#1      ------------------------------------------------------------
                                                                                  

consensus_8175#0      CTGAACTCACTATTCCTGTCTTTTACAACCAATTAATTGCTAGTAACATCAAAGGATCAG 778
consensus_8175#1      ------------------------------------------------------------
                                                                                  

consensus_8175#0      ATGCATCTTGGGTAGGCG 796
consensus_8175#1      ------------------