cluster # 8176

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Schistosoma mansoni
cluster # 8176 cluster # 8176 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8176#0 length = 421 sequences # 4

consensus_8176#1 length = 319 sequences # 1
consensus_8176#2 length = 263 sequences # 1

consensusID : consensus_8176#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 421
fasta sequence

                              [AGAGGACATCCTTATAAATTCCAAAAACCGAGATCAAATCGTCTACGTCTGAAGTTTCTTTTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGATACGTTTAAATCCAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGACTGAGTCACCCAAAGTATGAAAAATGATACAAAAAATTTAATTGCTGGAAGCTTGTCCGGTTTT-ACTGTCCGTTTCCTTACTCAACCATT--AGATGTTATAAAAATTCGCTTTC-AATTACAAGTTGAAGATATTAAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCATTTATCCGTATTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTTCTGTTA]

[+] EMBL CD163201             [AGAGGACATCCTTATAAATTCCAAAAACCGAGATCAAATCGTCTACGTCTGAAGTTTCTTTTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGATACGTTTAAATCCAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGACTGAGTCACCCAAAGTATGAAAAATGATACAAAAAATTTAATTGCTGGAAGCTTGTCCGGTTTTAACTGTCCGGTTCCTTACTCAAACATTTAAGATGTTATAAAAATTCGCTTTCAAATTACAAGTTGAAGATATTAAGCCCTCAGGAAAATCATATTACACTGGGCTACTACAGGCATTTATCCGTATTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTTCTGTT ]
[-] EMBL CD163523             [AGAGGACATCCTTATAAATTCCAAAAACCGAGATCAAATCGTCTACGTCTGAAGTTTCTTTTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGATACGTTTAAATCCAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGACTGAGTCACCCAAAGTATGAAAAATGATACAAAAAACTTAATTGCTGGAAGCTTGTCCGGTTTT ACTGTCCGTTTCCTTACTCGACCATT  AGATGTTATAAAAATTCGCTTTC AATTACAAGTTGAAGATATTAAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCATTTATCCGTATTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTTCTGTTA]
[-] EMBL CD163153             [ GAGGACATCCTTATAAATTCCAAAACCCGAGATCAAATCGTCTACGTCTGAAGTTTCTTTTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGGTACGTTTAAATCCAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGACTGAGTCACCCAAAGTATGAAAAATGATACAAAAAATTTAATTGCTGGAAGCTTGTCCGGTTTT ACTGTCCGTTTCCTTACTCAACCATT  AGATGTTATAAAAATTCGCTTTC AATTACAAGTTGAAGATATTAAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCATTTATCCGTATTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTTCTGTTA]
[-] EMBL CD163462             [ GAGGACATCCTTATAAATTCCAAAAACCGAGATCAAATCGTCTACGTCTGAAGTTTCTTTTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGATACGTTTAAATCCAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGACTGAGTCACCCAAAGTATGAAAAATGATACAAAAAATTTAATTGCTGGAAGCTTGTCCGGTTTT ACTGTCCGTTTCCTTACTCAACCATT  AGATGTTATAAAAATTCGCTTTC AATTACAAGTTGAAGATATTAAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCATTTATCCGTATTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTTCTGTTA]




>consensus_8176#0
AGAGGACATCCTTATAAATTCCAAAAACCGAGATCAAATCGTCTACGTCTGAAGTTTCTT
TTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTAT
TGATACGTTTAAATCCAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGACTGAGTCACC
CAAAGTATGAAAAATGATACAAAAAATTTAATTGCTGGAAGCTTGTCCGGTTTTACTGTC
CGTTTCCTTACTCAACCATTAGATGTTATAAAAATTCGCTTTCAATTACAAGTTGAAGAT
ATTAAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCATTTATCCGTATTTAC
AAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTTCTGTT
A

consensusID : consensus_8176#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [CTCTATTTCTAATTGTCAGTTATGAGGTGATATATCAGTAGTTAACCGTATACTAAACGATAATTTTGATTCTAATGTTTTATTTTCCAACCAAGAGTGATCTTCTGAGAGGACATCCTTATAAATTCCAAAAACCGAGATCAAATCGTCTACGTCTGAAGTTTCTTTTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGATACGTTTAAATCCAGGTTAGATCTTCATATTACTGCAAATCATGAGGATTAACACAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGA]

[-] EMBL CD110950             [CTCTATTTCTAATTGTCAGTTATGAGGTGATATATCAGTAGTTAACCGTATACTAAACGATAATTTTGATTCTAATGTTTTATTTTCCAACCAAGAGTGATCTTCTGAGAGGACATCCTTATAAATTCCAAAAACCGAGATCAAATCGTCTACGTCTGAAGTTTCTTTTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGATACGTTTAAATCCAGGTTAGATCTTCATATTACTGCAAATCATGAGGATTAACACAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGA]




>consensus_8176#1
CTCTATTTCTAATTGTCAGTTATGAGGTGATATATCAGTAGTTAACCGTATACTAAACGA
TAATTTTGATTCTAATGTTTTATTTTCCAACCAAGAGTGATCTTCTGAGAGGACATCCTT
ATAAATTCCAAAAACCGAGATCAAATCGTCTACGTCTGAAGTTTCTTTTACGTAGAGTCG
TGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGATACGTTTAAA
TCCAGGTTAGATCTTCATATTACTGCAAATCATGAGGATTAACACAGGTTGCTCGACCTC
CTGTCCTTACCGCTGAAGA

consensusID : consensus_8176#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence

                              [ATTGCTGGAAGCTTGTCCGGTTTTACTGTCCGTTTCCTTACTCAACCATTAGATGTTATAAAAATTCGCTTTCAAGTGAGTTTTTTAATTCTATGCTTGTGCTAAAAACAACTATAATTCAGTTACAAGTTGAAGATATTAAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCATTTATCCGTATTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTTCTGTTACATTT]

[+] EMBL CD139717             [ATTGCTGGAAGCTTGTCCGGTTTTACTGTCCGTTTCCTTACTCAACCATTAGATGTTATAAAAATTCGCTTTCAAGTGAGTTTTTTAATTCTATGCTTGTGCTAAAAACAACTATAATTCAGTTACAAGTTGAAGATATTAAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCATTTATCCGTATTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTTCTGTTACATTT]




>consensus_8176#2
ATTGCTGGAAGCTTGTCCGGTTTTACTGTCCGTTTCCTTACTCAACCATTAGATGTTATA
AAAATTCGCTTTCAAGTGAGTTTTTTAATTCTATGCTTGTGCTAAAAACAACTATAATTC
AGTTACAAGTTGAAGATATTAAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGG
CATTTATCCGTATTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAG
CACAATTTCTTTCTGTTACATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8176#0      AGAGGACATCCTTATAAATTCCAAAAACCGAGATCAAATCGTCTACGTCTGAAGTTTCTT 60
consensus_8176#2      ------------------------------------------------------------
consensus_8176#1      ------------------------------------------------------------
                                                                                  

consensus_8176#0      TTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTAT 120
consensus_8176#2      ------------------------------------------------------------
consensus_8176#1      ---------------------------------------------------CTCTATTTC 9
                                                                                  

consensus_8176#0      TGATACGTTTAAATCCAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGACTGAGTC-AC 179
consensus_8176#2      ---------------------------------------ATTGCTGGAAGCTTGTCC-GG 20
consensus_8176#1      TAATTGTCAGTTATGAGGTGATATATCAGTAGTTAACCGTATACTAAACGATAATTTTGA 69
                                                                 **  *   *        

consensus_8176#0      CCAAAGTATGAAAAATGATACAAAAAATTTAATTGCTGGAAGCTTGTCCGGTTTTACTGT 239
consensus_8176#2      TTTTACTGTCCGTTTCCTTACTCAACCATTAGATGTTATAAA--AATTCGCTTTCAA-GT 77
consensus_8176#1      TTCTAATGTTTTATTTTCCAACCAAGAGTGATCTTCTGAGAGGACATCC-TTATAAATTC 128
                          * * *          *   **   * *  *  *   *     * *  * * *    

consensus_8176#0      CCGTTTCCTTACTCAACCATTAGATGTTATAAA-AATTCGCTTTCAATTACAAGTTGAAG 298
consensus_8176#2      GAGTTTTTTAATTCTATGCTT--GTGCTAAAAACAACTATAATTCAGTTACAAGTTGAAG 135
consensus_8176#1      CAAAAACCGAGATCAAATCGTCTACGTCTGAAG----TTTCTTTTACGTAGAGTCGTGAG 184
                                  ** *    *    *    **     *    ** *  ** *      **

consensus_8176#0      ATATT-AAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCA--TTTATCCGTA 355
consensus_8176#2      ATATT-AAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCA--TTTATCCGTA 192
consensus_8176#1      TTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGATACGTTTAAATCCA 244
                       ** * ***  *** *  * * ** ** *      *** ***  *  *  ****     *

consensus_8176#0      TTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTT 415
consensus_8176#2      TTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTT 252
consensus_8176#1      GGTTAGATCTTCATATTACTGCAAATCATGAGGATTAACACAGGTT-GCTCGACCTCCTG 303
                        *   *     *   *        **    * *    **   *   ** * *  ** * 

consensus_8176#0      CTGTTA---------- 421
consensus_8176#2      CTGTTACATTT----- 263
consensus_8176#1      TCCTTACCGCTGAAGA 319
                         ***