cluster # 8178

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Schistosoma mansoni
cluster # 8178 cluster # 8178 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8178#0 length = 757 sequences # 2
consensus_8178#1 length = 454 sequences # 1

consensus_8178#2 length = 252 sequences # 1
consensus_8178#3 length = 225 sequences # 2

consensusID : consensus_8178#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 757
fasta sequence

                              [TGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTGCTCTGGGCATTATTCCTTCGGTACTTCATAAGCCGACAAGAGTGGTTGGTTGATGAGTTTCAGGTGAGTTGACGGGTGTTTGTGTGATGTGTGTCGATAGGCGTTGCGATGTGATTTGATTTGAGTTGTGTAGATGTGTTTGCAGATGGTTTGATTGTTTGATTGTTGATTTTCGCAGTGTATTTTGGTGGCGGTGTTGTTGTTGTTGTTATGTGAATGTTGAATAGTTGATATTAGTTTCATGATGAATTGACCATACATTCGCGGTTTCCACTGACTCGAGAATTGATGTTGTTCTCCGTCACTTGGATGTCTGACTTTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGCTTTTGTGTTTAATTTGTTTATTTTGTACGAGCGAAGACGGCGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGCTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTG]

[+] EMBL CD162074             [TGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTGCTCTGGGCATTATTCCTTCGGTACTTCATAAGCCGACAAGAGTGGTTGGTTGATGAGTTTCAGGTGAGTTGACGGGTGTTTGTGTGATGTGTGTCGATAGGCGTTGCGATGTGATTTGATTTGAGTTGTGTAGATGTGTTTGCAGATGGTTTGATTGTTTGATTGTTGATTTTCGCAGTGTATTTTGGTGGCGGTGTTGTTGTTGTTGTTATGTGAATGTTGAATAGTTGATATTAGTTTCATGATGAATTGACCATACATTCGCGGTTTCCACTGACTCGAGAATTGATGTTGTTCTCCGTCACTTGGATGTCTGACTTTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGCTTTTGTGTTTAATTTGTTTATTTTGTACGAGCGAAGACGGCGGTGTTGGTTTGGCGA                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD151645             [                                                                                                                                                                                                                                                                                                                                                                          TGTGTTTGTGTTTGCGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGTTTTTGTGTGTAATTTGTTTATTTTGTAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGCTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTG]




>consensus_8178#0
TGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTGCTCTGGGCATTATTCCTTC
GGTACTTCATAAGCCGACAAGAGTGGTTGGTTGATGAGTTTCAGGTGAGTTGACGGGTGT
TTGTGTGATGTGTGTCGATAGGCGTTGCGATGTGATTTGATTTGAGTTGTGTAGATGTGT
TTGCAGATGGTTTGATTGTTTGATTGTTGATTTTCGCAGTGTATTTTGGTGGCGGTGTTG
TTGTTGTTGTTATGTGAATGTTGAATAGTTGATATTAGTTTCATGATGAATTGACCATAC
ATTCGCGGTTTCCACTGACTCGAGAATTGATGTTGTTCTCCGTCACTTGGATGTCTGACT
TTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGCTTTTG
TGTTTAATTTGTTTATTTTGTACGAGCGAAGACGGCGGTGTTGGTTTGGCGATGGAGAGA
GTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAA
TTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAA
GAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGCTTGGCGATGGAGAG
AGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGA
ATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTG

consensusID : consensus_8178#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [CTCCGTCACTTGGATGTCTGACTTTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGTTTTTGTGTTTAATTTGTTTATTTTGTAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAACAGGTGTATTTGTATCTGAGAGATGTGAGCGAGCGAGTGTATTTTGGAATTGGAGTGTACTGACTAGACGGTAGTATAGTTTTTGTGGCGGCGGCGGTTGGCGGCGTAGAGAGTGGTTGGTTGATGAGTTTCAGGTGAGGTTAGACAGGTGTTTGTGTGATGTTGTTCTCCGTCACTTGGATGTCTGACTTTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGTTTTAGTGTTTAATTTGTTTATTTTGTAGGAGCGAAGACGGTGGTGTTGGTTTGG]

[+] EMBL CD155294             [CTCCGTCACTTGGATGTCTGACTTTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGTTTTTGTGTTTAATTTGTTTATTTTGTAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAACAGGTGTATTTGTATCTGAGAGATGTGAGCGAGCGAGTGTATTTTGGAATTGGAGTGTACTGACTAGACGGTAGTATAGTTTTTGTGGCGGCGGCGGTTGGCGGCGTAGAGAGTGGTTGGTTGATGAGTTTCAGGTGAGGTTAGACAGGTGTTTGTGTGATGTTGTTCTCCGTCACTTGGATGTCTGACTTTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGTTTTAGTGTTTAATTTGTTTATTTTGTAGGAGCGAAGACGGTGGTGTTGGTTTGG]




>consensus_8178#1
CTCCGTCACTTGGATGTCTGACTTTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGAC
GAGTTAGTGATATGTTGTTTTTGTGTTTAATTTGTTTATTTTGTAGGAGCGAAGACGGTG
GTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAACAGGTGTATTTGTATCTGAGAGATG
TGAGCGAGCGAGTGTATTTTGGAATTGGAGTGTACTGACTAGACGGTAGTATAGTTTTTG
TGGCGGCGGCGGTTGGCGGCGTAGAGAGTGGTTGGTTGATGAGTTTCAGGTGAGGTTAGA
CAGGTGTTTGTGTGATGTTGTTCTCCGTCACTTGGATGTCTGACTTTTGTGTTTGTGTTT
GTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGTTTTAGTGTTTAATTTGTTTA
TTTTGTAGGAGCGAAGACGGTGGTGTTGGTTTGG

consensusID : consensus_8178#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [TTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAAAGAGGA]

[-] EMBL CD064795             [TTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAAAGAGGA]




>consensus_8178#2
TTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACG
GGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTT
CAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGGC
GGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCG
ATGGAAAGAGGA

consensusID : consensus_8178#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 225
fasta sequence

                              [GTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGCGTACTGACTAGACGGGGGTATAGTTTTTGTGGCGACGGCAGTGGCGGCGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAA]

[+] EMBL CD184068             [GTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGCGTACTGACTAGACGGGGGTATAGTTTTTGTGGCGACGGCAGTGGCGGCGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAA]
[+] EMBL CD183992             [GTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGCGTACTGACTAGACGGGGGTATAGTTTTTGTGGCGACGGCAGTGGCGGCGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAA]




>consensus_8178#3
GTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTG
TGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGCG
TACTGACTAGACGGGGGTATAGTTTTTGTGGCGACGGCAGTGGCGGCGGAGTATAGTTTT
TGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8178#1      ------------------------------------------------------------
consensus_8178#3      ------------------------------------------------------------
consensus_8178#0      TGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTGCTCTGGGCATTATTCCTTC 60
consensus_8178#2      ------------------------------------------------------------
                                                                                  

consensus_8178#1      ------------------------------------------------------------
consensus_8178#3      ------------------------------------------------------------
consensus_8178#0      GGTACTTCATAAGCCGACAAGAGTGGTTGGTTGATGAGTTTCAGGTGAGTTGACGGGTGT 120
consensus_8178#2      ------------------------------------------------------------
                                                                                  

consensus_8178#1      ------------------------------------------------------------
consensus_8178#3      ------------------------------------------------------------
consensus_8178#0      TTGTGTGATGTGTGTCGATAGGCGTTGCGATGTGATTTGATTTGAGTTGTGTAGATGTGT 180
consensus_8178#2      ------------------------------------------------------------
                                                                                  

consensus_8178#1      ------------------------------------------------------------
consensus_8178#3      ------------------------------------------------------------
consensus_8178#0      TTGCAGATGGTTTGATTGTTTGATTGTTGATTTTCGCAGTGTATTTTGGTGGCGGTGTTG 240
consensus_8178#2      ------------------------------------------------------------
                                                                                  

consensus_8178#1      ------------------------------------------------------------
consensus_8178#3      ------------------------------------------------------------
consensus_8178#0      TTGTTGTTGTTATGTGAATGTTGAATAGTTGATATTAGTTTCATGATGAATTGACCATAC 300
consensus_8178#2      ------------------------------------------------------------
                                                                                  

consensus_8178#1      -------------------------------------CTCCGTCACTTGGATGTCTGACT 23
consensus_8178#3      ------------------------------------------------------------
consensus_8178#0      ATTCGCGGTTTCCACTGACTCGAGAATTGATGTTGTTCTCCGTCACTTGGATGTCTGACT 360
consensus_8178#2      ------------------------------------------------------------
                                                                                  

consensus_8178#1      TTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGTTTTTG 83
consensus_8178#3      ------------------------------------------------------------
consensus_8178#0      TTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGCTTTTG 420
consensus_8178#2      ------------------------------------------------------------
                                                                                  

consensus_8178#1      TGTTTAATTTGTTTATTTTGTAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGA 143
consensus_8178#3      -------GTTGATGAGTTT-CAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGA 52
consensus_8178#0      TGTTTAATTTGTTTATTTTGTACGAGCGAAGACGGCGGTGTTGGTTTGGCGATGGAGAGA 480
consensus_8178#2      ------------------------------------------------------------
                                                                                  

consensus_8178#1      GTGGACTGTGAACAGGTGTATTTGTATCTGAGAGATGTGAGCGAGCGAGTGTATTTTGGA 203
consensus_8178#3      GTGGACTGTGAAGAGGTGTAGTTGTATC-GAGAGATGTGAGCGAGCGAGTGTATTTTTGA 111
consensus_8178#0      GTGGACTGTGAAGAGGTGTAGTTGTATC-GAGAGATGTGAGCGAGCGAGTGTATTTTTGA 539
consensus_8178#2      ---------------------TTGTATC-GAGAGATGTGAGCGAGCGAGTGTATTTTTGA 38
                                           ******* **************************** **

consensus_8178#1      ATTGGAGTGTACTGACTAGACGGTAGTATAGTTTTTGTGGCGGCGGCGGTTGGCGGCGTA 263
consensus_8178#3      ATTGGAGCGTACTGACTAGACGGGGGTATAGTTTTTGTGGCGACGGCAGT-GGCGGCG-- 168
consensus_8178#0      ATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGT-GGCGGCGAC 598
consensus_8178#2      ATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGT-GGCGGCGAC 97
                      ******* ***************  ***************** **** ** *******  

consensus_8178#1      GAGAGTGGTTGGTTGATGAGTTTCAGGTGAGGTTAGACAG--GTGTTTGTGTGATGTTGT 321
consensus_8178#3      GAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGAT-GAGTTTCAGGAGCGAA-- 225
consensus_8178#0      AAGAGTGGTTGGTTGATGAGTTTCAGGAGCGA--AGACGGTGGTGTTGGCTTGGCGATGG 656
consensus_8178#2      AAGAGTGGTTGGTTGATGAGTTTCAGGAGCGA--AGACGGTGGTGTTGGTTTGGCGATGG 155
                       **  * ***  *      *   ** * * *    *      * ***        *    

consensus_8178#1      TCTCCGTC-ACTTGGATGTCTGACTTTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTG 380
consensus_8178#3      ------------------------------------------------------------
consensus_8178#0      AGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTT 716
consensus_8178#2      AGAGAGTGGACTGTGAAGA--GGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGG 213
                                                                                  

consensus_8178#1      ACGAGTTAGTGATATGTTGTTTTAGTGTTTAATTTGTTTATTTTGTAGGAGCGAAGACGG 440
consensus_8178#3      ------------------------------------------------------------
consensus_8178#0      TTGAATTGGAG-TGTACTGACTAGACGGGAGTATAGTTTTTG------------------ 757
consensus_8178#2      AGCGAAGACGGTGGTGTTGGTTTGGCGATGGAAAGAGGA--------------------- 252
                                                                                  

consensus_8178#1      TGGTGTTGGTTTGG 454
consensus_8178#3      --------------
consensus_8178#0      --------------
consensus_8178#2      --------------